Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14465

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14460 and CA264_14465 are separated by 118 nucleotidesCA264_14465 and CA264_14470 are separated by 584 nucleotides CA264_14460: CA264_14460 - transcription termination/antitermination protein NusA, at 3,392,129 to 3,393,382 _14460 CA264_14465: CA264_14465 - translation initiation factor IF-2, at 3,393,501 to 3,396,584 _14465 CA264_14470: CA264_14470 - hypothetical protein, at 3,397,169 to 3,397,504 _14470 Position (kb) 3393 3394 3395 3396 3397Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3393.381 kb on - strandat 3393.441 kb on - strandat 3393.441 kb on - strandat 3393.443 kb on - strandat 3393.461 kb on + strandat 3393.464 kb on + strandat 3393.465 kb on - strandat 3393.476 kb on + strandat 3393.480 kb on + strandat 3396.575 kb on + strandat 3396.648 kb on + strandat 3396.659 kb on + strandat 3396.697 kb on + strandat 3396.727 kb on + strandat 3396.727 kb on + strandat 3396.728 kb on - strandat 3396.729 kb on + strandat 3396.729 kb on + strandat 3396.730 kb on - strandat 3396.730 kb on - strandat 3396.730 kb on - strandat 3396.730 kb on - strandat 3396.733 kb on + strandat 3396.733 kb on + strandat 3396.734 kb on - strandat 3396.780 kb on - strandat 3396.791 kb on - strandat 3396.850 kb on - strandat 3396.879 kb on + strandat 3396.951 kb on + strandat 3397.005 kb on + strandat 3397.090 kb on - strandat 3397.090 kb on - strandat 3397.146 kb on + strandat 3397.147 kb on - strandat 3397.148 kb on + strandat 3397.149 kb on - strandat 3397.149 kb on - strandat 3397.149 kb on - strandat 3397.152 kb on + strandat 3397.153 kb on - strandat 3397.154 kb on + strandat 3397.155 kb on - strandat 3397.160 kb on + strandat 3397.210 kb on + strand, within CA264_14470at 3397.210 kb on + strand, within CA264_14470at 3397.211 kb on - strand, within CA264_14470at 3397.311 kb on + strand, within CA264_14470at 3397.315 kb on + strand, within CA264_14470at 3397.316 kb on - strand, within CA264_14470at 3397.320 kb on + strand, within CA264_14470at 3397.320 kb on + strand, within CA264_14470at 3397.353 kb on - strand, within CA264_14470at 3397.401 kb on + strand, within CA264_14470at 3397.414 kb on + strand, within CA264_14470at 3397.415 kb on - strand, within CA264_14470at 3397.524 kb on + strandat 3397.527 kb on + strandat 3397.529 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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3,393,381 - -3.2
3,393,441 - +0.1
3,393,441 - -1.8
3,393,443 - -1.3
3,393,461 + +0.3
3,393,464 + -1.9
3,393,465 - -1.2
3,393,476 + -1.7
3,393,480 + -2.0
3,396,575 + +1.3
3,396,648 + +2.4
3,396,659 + -0.4
3,396,697 + -0.1
3,396,727 + -1.3
3,396,727 + +0.0
3,396,728 - +0.8
3,396,729 + +0.1
3,396,729 + -0.3
3,396,730 - +1.3
3,396,730 - +1.2
3,396,730 - +0.3
3,396,730 - +0.8
3,396,733 + -1.2
3,396,733 + -1.6
3,396,734 - -0.0
3,396,780 - +0.5
3,396,791 - +0.6
3,396,850 - +0.7
3,396,879 + +0.2
3,396,951 + -0.0
3,397,005 + +0.6
3,397,090 - +0.4
3,397,090 - +0.6
3,397,146 + -0.6
3,397,147 - -1.3
3,397,148 + +0.9
3,397,149 - -0.9
3,397,149 - +0.6
3,397,149 - +0.3
3,397,152 + -1.6
3,397,153 - +0.5
3,397,154 + -2.5
3,397,155 - +0.4
3,397,160 + -0.2
3,397,210 + CA264_14470 0.12 +0.4
3,397,210 + CA264_14470 0.12 -0.1
3,397,211 - CA264_14470 0.12 +0.6
3,397,311 + CA264_14470 0.42 +1.0
3,397,315 + CA264_14470 0.43 +0.6
3,397,316 - CA264_14470 0.44 -0.7
3,397,320 + CA264_14470 0.45 +0.0
3,397,320 + CA264_14470 0.45 +0.1
3,397,353 - CA264_14470 0.55 +1.0
3,397,401 + CA264_14470 0.69 +0.7
3,397,414 + CA264_14470 0.73 +1.3
3,397,415 - CA264_14470 0.73 +1.0
3,397,524 + +1.6
3,397,527 + +0.4
3,397,529 + +0.7

Or see this region's nucleotide sequence