Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14290

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14285 and CA264_14290 are separated by 865 nucleotidesCA264_14290 and CA264_14295 are separated by 250 nucleotides CA264_14285: CA264_14285 - mannosyltransferase, at 3,352,586 to 3,354,220 _14285 CA264_14290: CA264_14290 - glycosyl transferase family 2, at 3,355,086 to 3,355,481 _14290 CA264_14295: CA264_14295 - multidrug ABC transporter ATP-binding protein, at 3,355,732 to 3,356,643 _14295 Position (kb) 3355 3356Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3354.144 kb on - strandat 3354.154 kb on - strandat 3354.210 kb on + strandat 3354.211 kb on - strandat 3354.211 kb on - strandat 3354.219 kb on - strandat 3354.219 kb on - strandat 3354.231 kb on + strandat 3354.231 kb on + strandat 3354.231 kb on + strandat 3354.232 kb on - strandat 3354.232 kb on - strandat 3354.232 kb on - strandat 3354.232 kb on - strandat 3354.236 kb on + strandat 3354.346 kb on - strandat 3354.367 kb on + strandat 3354.368 kb on - strandat 3354.370 kb on + strandat 3354.371 kb on - strandat 3354.457 kb on - strandat 3354.470 kb on - strandat 3354.472 kb on - strandat 3354.495 kb on + strandat 3354.510 kb on + strandat 3354.548 kb on + strandat 3354.548 kb on + strandat 3354.549 kb on - strandat 3354.549 kb on - strandat 3354.596 kb on + strandat 3354.596 kb on + strandat 3354.597 kb on - strandat 3354.597 kb on - strandat 3354.597 kb on - strandat 3354.637 kb on - strandat 3354.663 kb on + strandat 3354.663 kb on + strandat 3354.669 kb on + strandat 3354.679 kb on + strandat 3354.924 kb on - strandat 3354.924 kb on - strandat 3354.955 kb on - strandat 3355.035 kb on + strandat 3355.036 kb on - strandat 3355.112 kb on + strandat 3355.113 kb on - strandat 3355.198 kb on + strand, within CA264_14290at 3355.309 kb on + strand, within CA264_14290at 3355.312 kb on + strand, within CA264_14290at 3355.312 kb on + strand, within CA264_14290at 3355.313 kb on - strand, within CA264_14290at 3355.319 kb on + strand, within CA264_14290at 3355.357 kb on + strand, within CA264_14290at 3355.357 kb on + strand, within CA264_14290at 3355.358 kb on - strand, within CA264_14290at 3355.358 kb on - strand, within CA264_14290at 3355.506 kb on - strandat 3355.512 kb on + strandat 3355.513 kb on - strandat 3355.515 kb on - strandat 3355.515 kb on - strandat 3355.526 kb on + strandat 3355.584 kb on - strandat 3355.657 kb on - strandat 3355.688 kb on + strandat 3355.726 kb on - strandat 3355.739 kb on + strandat 3355.739 kb on + strandat 3355.740 kb on - strandat 3356.037 kb on + strand, within CA264_14295at 3356.038 kb on - strand, within CA264_14295at 3356.038 kb on - strand, within CA264_14295at 3356.038 kb on - strand, within CA264_14295at 3356.038 kb on - strand, within CA264_14295at 3356.050 kb on - strand, within CA264_14295at 3356.076 kb on - strand, within CA264_14295at 3356.104 kb on + strand, within CA264_14295at 3356.104 kb on + strand, within CA264_14295at 3356.197 kb on - strand, within CA264_14295at 3356.204 kb on + strand, within CA264_14295at 3356.353 kb on - strand, within CA264_14295at 3356.385 kb on + strand, within CA264_14295at 3356.386 kb on - strand, within CA264_14295at 3356.386 kb on - strand, within CA264_14295at 3356.386 kb on - strand, within CA264_14295at 3356.391 kb on - strand, within CA264_14295

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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3,354,144 - -2.2
3,354,154 - -2.0
3,354,210 + +0.9
3,354,211 - -0.4
3,354,211 - -1.8
3,354,219 - -1.1
3,354,219 - -0.3
3,354,231 + +0.5
3,354,231 + +0.8
3,354,231 + +0.3
3,354,232 - -0.8
3,354,232 - -0.8
3,354,232 - -0.5
3,354,232 - -0.7
3,354,236 + +0.3
3,354,346 - +0.4
3,354,367 + -1.3
3,354,368 - +0.2
3,354,370 + -1.4
3,354,371 - +0.2
3,354,457 - +1.0
3,354,470 - -0.0
3,354,472 - -0.5
3,354,495 + -1.8
3,354,510 + +0.8
3,354,548 + -1.0
3,354,548 + -0.8
3,354,549 - -0.5
3,354,549 - +0.1
3,354,596 + -3.0
3,354,596 + -1.8
3,354,597 - -0.0
3,354,597 - +0.2
3,354,597 - +0.3
3,354,637 - +0.2
3,354,663 + -1.2
3,354,663 + -1.5
3,354,669 + -1.1
3,354,679 + -1.9
3,354,924 - +0.3
3,354,924 - -0.0
3,354,955 - -0.4
3,355,035 + -3.0
3,355,036 - +0.2
3,355,112 + -4.2
3,355,113 - -0.7
3,355,198 + CA264_14290 0.28 -3.1
3,355,309 + CA264_14290 0.56 -3.4
3,355,312 + CA264_14290 0.57 -3.3
3,355,312 + CA264_14290 0.57 -2.6
3,355,313 - CA264_14290 0.57 -1.2
3,355,319 + CA264_14290 0.59 -4.5
3,355,357 + CA264_14290 0.68 -1.7
3,355,357 + CA264_14290 0.68 -1.8
3,355,358 - CA264_14290 0.69 +1.3
3,355,358 - CA264_14290 0.69 -1.8
3,355,506 - -2.3
3,355,512 + -0.8
3,355,513 - -2.8
3,355,515 - -2.0
3,355,515 - -2.4
3,355,526 + -2.3
3,355,584 - -2.3
3,355,657 - -2.2
3,355,688 + -2.3
3,355,726 - -0.4
3,355,739 + -1.6
3,355,739 + -1.7
3,355,740 - -1.0
3,356,037 + CA264_14295 0.33 -1.6
3,356,038 - CA264_14295 0.34 -1.2
3,356,038 - CA264_14295 0.34 -0.6
3,356,038 - CA264_14295 0.34 -3.4
3,356,038 - CA264_14295 0.34 -1.7
3,356,050 - CA264_14295 0.35 +1.2
3,356,076 - CA264_14295 0.38 -2.5
3,356,104 + CA264_14295 0.41 -1.3
3,356,104 + CA264_14295 0.41 -0.9
3,356,197 - CA264_14295 0.51 -1.4
3,356,204 + CA264_14295 0.52 -3.0
3,356,353 - CA264_14295 0.68 -1.6
3,356,385 + CA264_14295 0.72 -1.0
3,356,386 - CA264_14295 0.72 -1.9
3,356,386 - CA264_14295 0.72 +0.2
3,356,386 - CA264_14295 0.72 -1.0
3,356,391 - CA264_14295 0.72 -1.9

Or see this region's nucleotide sequence