Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14120

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14110 and CA264_14115 are separated by 161 nucleotidesCA264_14115 and CA264_14120 are separated by 132 nucleotidesCA264_14120 and CA264_14125 are separated by 133 nucleotidesCA264_14125 and CA264_14130 are separated by 84 nucleotides CA264_14110: CA264_14110 - phosphoribosyltransferase, at 3,314,488 to 3,315,114 _14110 CA264_14115: CA264_14115 - hydrolase, at 3,315,276 to 3,315,962 _14115 CA264_14120: CA264_14120 - hypothetical protein, at 3,316,095 to 3,316,766 _14120 CA264_14125: CA264_14125 - endonuclease V, at 3,316,900 to 3,317,583 _14125 CA264_14130: CA264_14130 - GxxExxY protein, at 3,317,668 to 3,318,048 _14130 Position (kb) 3316 3317Strain fitness (log2 ratio) -1 0 1 2at 3315.133 kb on + strandat 3315.202 kb on - strandat 3315.419 kb on + strand, within CA264_14115at 3315.420 kb on - strand, within CA264_14115at 3315.520 kb on - strand, within CA264_14115at 3315.520 kb on - strand, within CA264_14115at 3315.601 kb on - strand, within CA264_14115at 3315.601 kb on - strand, within CA264_14115at 3315.679 kb on + strand, within CA264_14115at 3315.679 kb on + strand, within CA264_14115at 3315.680 kb on - strand, within CA264_14115at 3315.683 kb on + strand, within CA264_14115at 3315.684 kb on - strand, within CA264_14115at 3315.715 kb on - strand, within CA264_14115at 3315.828 kb on - strand, within CA264_14115at 3315.950 kb on + strandat 3315.952 kb on + strandat 3315.953 kb on - strandat 3315.953 kb on - strandat 3315.953 kb on - strandat 3315.962 kb on + strandat 3315.963 kb on - strandat 3316.005 kb on + strandat 3316.006 kb on - strandat 3316.013 kb on - strandat 3316.024 kb on + strandat 3316.043 kb on - strandat 3316.069 kb on - strandat 3316.090 kb on + strandat 3316.090 kb on + strandat 3316.090 kb on + strandat 3316.091 kb on - strandat 3316.091 kb on - strandat 3316.094 kb on + strandat 3316.094 kb on + strandat 3316.095 kb on - strandat 3316.095 kb on - strandat 3316.095 kb on - strandat 3316.105 kb on + strandat 3316.105 kb on + strandat 3316.106 kb on - strandat 3316.132 kb on + strandat 3316.132 kb on + strandat 3316.133 kb on - strandat 3316.173 kb on - strand, within CA264_14120at 3316.328 kb on + strand, within CA264_14120at 3316.329 kb on - strand, within CA264_14120at 3316.383 kb on + strand, within CA264_14120at 3316.398 kb on - strand, within CA264_14120at 3316.412 kb on - strand, within CA264_14120at 3316.439 kb on + strand, within CA264_14120at 3316.459 kb on + strand, within CA264_14120at 3316.658 kb on - strand, within CA264_14120at 3316.780 kb on + strandat 3316.780 kb on + strandat 3316.819 kb on + strandat 3316.820 kb on - strandat 3316.832 kb on + strandat 3316.842 kb on + strandat 3316.843 kb on - strandat 3316.843 kb on - strandat 3316.893 kb on + strandat 3316.907 kb on - strandat 3316.909 kb on + strandat 3316.910 kb on - strandat 3316.989 kb on + strand, within CA264_14125at 3316.990 kb on - strand, within CA264_14125at 3317.050 kb on - strand, within CA264_14125at 3317.079 kb on + strand, within CA264_14125at 3317.079 kb on + strand, within CA264_14125at 3317.082 kb on - strand, within CA264_14125at 3317.150 kb on - strand, within CA264_14125at 3317.237 kb on + strand, within CA264_14125at 3317.333 kb on + strand, within CA264_14125at 3317.439 kb on + strand, within CA264_14125at 3317.439 kb on + strand, within CA264_14125at 3317.440 kb on - strand, within CA264_14125at 3317.468 kb on + strand, within CA264_14125at 3317.519 kb on - strandat 3317.521 kb on - strandat 3317.554 kb on + strandat 3317.555 kb on - strandat 3317.611 kb on - strandat 3317.657 kb on - strandat 3317.666 kb on + strandat 3317.689 kb on + strandat 3317.690 kb on - strandat 3317.699 kb on + strandat 3317.700 kb on - strandat 3317.700 kb on - strandat 3317.700 kb on - strandat 3317.700 kb on - strandat 3317.721 kb on + strand, within CA264_14130at 3317.721 kb on + strand, within CA264_14130

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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3,315,133 + -0.1
3,315,202 - +1.2
3,315,419 + CA264_14115 0.21 -0.4
3,315,420 - CA264_14115 0.21 -0.5
3,315,520 - CA264_14115 0.36 +1.3
3,315,520 - CA264_14115 0.36 +0.6
3,315,601 - CA264_14115 0.47 -0.7
3,315,601 - CA264_14115 0.47 +0.8
3,315,679 + CA264_14115 0.59 +0.0
3,315,679 + CA264_14115 0.59 -0.3
3,315,680 - CA264_14115 0.59 +0.4
3,315,683 + CA264_14115 0.59 -0.0
3,315,684 - CA264_14115 0.59 -0.3
3,315,715 - CA264_14115 0.64 +1.3
3,315,828 - CA264_14115 0.80 +0.3
3,315,950 + +0.3
3,315,952 + +0.0
3,315,953 - -0.8
3,315,953 - -1.1
3,315,953 - +0.4
3,315,962 + +2.0
3,315,963 - -0.3
3,316,005 + +0.8
3,316,006 - +0.5
3,316,013 - +0.9
3,316,024 + +0.6
3,316,043 - +0.8
3,316,069 - -0.0
3,316,090 + +0.4
3,316,090 + -0.1
3,316,090 + +0.4
3,316,091 - -0.6
3,316,091 - +0.0
3,316,094 + +1.7
3,316,094 + -0.4
3,316,095 - +0.1
3,316,095 - +0.7
3,316,095 - +0.3
3,316,105 + +1.7
3,316,105 + -0.2
3,316,106 - +0.2
3,316,132 + +0.5
3,316,132 + -0.4
3,316,133 - -0.4
3,316,173 - CA264_14120 0.12 -1.2
3,316,328 + CA264_14120 0.35 +0.9
3,316,329 - CA264_14120 0.35 +0.2
3,316,383 + CA264_14120 0.43 +0.2
3,316,398 - CA264_14120 0.45 +0.2
3,316,412 - CA264_14120 0.47 +0.3
3,316,439 + CA264_14120 0.51 -0.1
3,316,459 + CA264_14120 0.54 +0.3
3,316,658 - CA264_14120 0.84 +0.6
3,316,780 + -0.1
3,316,780 + +0.4
3,316,819 + +0.5
3,316,820 - +0.6
3,316,832 + +2.2
3,316,842 + +0.8
3,316,843 - +0.8
3,316,843 - +0.4
3,316,893 + +0.3
3,316,907 - +0.3
3,316,909 + +0.2
3,316,910 - -0.6
3,316,989 + CA264_14125 0.13 +0.7
3,316,990 - CA264_14125 0.13 +0.8
3,317,050 - CA264_14125 0.22 -0.1
3,317,079 + CA264_14125 0.26 +0.5
3,317,079 + CA264_14125 0.26 +0.9
3,317,082 - CA264_14125 0.27 +0.1
3,317,150 - CA264_14125 0.37 +2.1
3,317,237 + CA264_14125 0.49 +1.7
3,317,333 + CA264_14125 0.63 +1.7
3,317,439 + CA264_14125 0.79 +0.8
3,317,439 + CA264_14125 0.79 +0.6
3,317,440 - CA264_14125 0.79 +2.2
3,317,468 + CA264_14125 0.83 +1.0
3,317,519 - +0.2
3,317,521 - -1.0
3,317,554 + -0.7
3,317,555 - +0.1
3,317,611 - -0.1
3,317,657 - -1.4
3,317,666 + +1.0
3,317,689 + +0.5
3,317,690 - -1.5
3,317,699 + +0.3
3,317,700 - +0.7
3,317,700 - -0.6
3,317,700 - -0.6
3,317,700 - -0.9
3,317,721 + CA264_14130 0.14 +0.7
3,317,721 + CA264_14130 0.14 +0.1

Or see this region's nucleotide sequence