Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_13090 and CA264_13095 are separated by 171 nucleotides CA264_13095 and CA264_13100 are separated by 943 nucleotides
CA264_13090: CA264_13090 - peptidase M42, at 3,052,605 to 3,053,675
_13090
CA264_13095: CA264_13095 - cobalamin-binding protein, at 3,053,847 to 3,054,620
_13095
CA264_13100: CA264_13100 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 3,055,564 to 3,056,796
_13100
Position (kb)
3053
3054
3055 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3053.042 kb on - strand, within CA264_13090 at 3053.042 kb on - strand, within CA264_13090 at 3053.071 kb on + strand, within CA264_13090 at 3053.112 kb on + strand, within CA264_13090 at 3053.112 kb on + strand, within CA264_13090 at 3053.112 kb on + strand, within CA264_13090 at 3053.115 kb on + strand, within CA264_13090 at 3053.115 kb on + strand, within CA264_13090 at 3053.116 kb on - strand, within CA264_13090 at 3053.116 kb on - strand, within CA264_13090 at 3053.116 kb on - strand, within CA264_13090 at 3053.116 kb on - strand, within CA264_13090 at 3053.214 kb on + strand, within CA264_13090 at 3053.215 kb on - strand, within CA264_13090 at 3053.215 kb on - strand, within CA264_13090 at 3053.222 kb on - strand, within CA264_13090 at 3053.308 kb on + strand, within CA264_13090 at 3053.560 kb on - strand, within CA264_13090 at 3053.699 kb on + strand at 3053.700 kb on - strand at 3053.805 kb on - strand at 3053.805 kb on - strand at 3053.805 kb on - strand at 3053.812 kb on - strand at 3053.827 kb on + strand at 3053.828 kb on - strand at 3053.828 kb on - strand at 3053.836 kb on - strand at 3053.896 kb on + strand at 3054.088 kb on - strand, within CA264_13095 at 3054.088 kb on - strand, within CA264_13095 at 3054.140 kb on + strand, within CA264_13095 at 3054.144 kb on + strand, within CA264_13095 at 3054.144 kb on + strand, within CA264_13095 at 3054.146 kb on + strand, within CA264_13095 at 3054.146 kb on + strand, within CA264_13095 at 3054.147 kb on - strand, within CA264_13095 at 3054.147 kb on - strand, within CA264_13095 at 3054.230 kb on + strand, within CA264_13095 at 3054.230 kb on + strand, within CA264_13095 at 3054.230 kb on + strand, within CA264_13095 at 3054.231 kb on - strand, within CA264_13095 at 3054.232 kb on + strand, within CA264_13095 at 3054.233 kb on - strand, within CA264_13095 at 3054.233 kb on - strand, within CA264_13095 at 3054.274 kb on + strand, within CA264_13095 at 3054.285 kb on + strand, within CA264_13095 at 3054.285 kb on + strand, within CA264_13095 at 3054.307 kb on - strand, within CA264_13095 at 3054.307 kb on - strand, within CA264_13095 at 3054.307 kb on - strand, within CA264_13095 at 3054.307 kb on - strand, within CA264_13095 at 3054.341 kb on + strand, within CA264_13095 at 3054.343 kb on + strand, within CA264_13095 at 3054.343 kb on + strand, within CA264_13095 at 3054.343 kb on + strand, within CA264_13095 at 3054.343 kb on + strand, within CA264_13095 at 3054.344 kb on - strand, within CA264_13095 at 3054.344 kb on - strand, within CA264_13095 at 3054.344 kb on - strand, within CA264_13095 at 3054.344 kb on - strand, within CA264_13095 at 3054.344 kb on - strand, within CA264_13095 at 3054.459 kb on + strand, within CA264_13095 at 3054.566 kb on - strand at 3054.618 kb on + strand at 3054.618 kb on + strand at 3054.618 kb on + strand at 3054.638 kb on + strand at 3054.638 kb on + strand at 3054.638 kb on + strand at 3054.639 kb on - strand at 3054.639 kb on - strand at 3054.692 kb on + strand at 3054.700 kb on + strand at 3054.719 kb on - strand at 3054.719 kb on - strand at 3054.721 kb on - strand at 3054.721 kb on - strand at 3054.749 kb on + strand at 3054.751 kb on + strand at 3054.811 kb on + strand at 3054.812 kb on - strand at 3054.823 kb on + strand at 3054.887 kb on + strand at 3054.888 kb on - strand at 3054.908 kb on - strand at 3054.922 kb on + strand at 3054.923 kb on - strand at 3054.931 kb on + strand at 3055.072 kb on + strand at 3055.155 kb on + strand at 3055.164 kb on + strand at 3055.164 kb on + strand at 3055.164 kb on + strand at 3055.165 kb on - strand at 3055.165 kb on - strand at 3055.189 kb on - strand at 3055.196 kb on - strand at 3055.206 kb on - strand at 3055.238 kb on + strand at 3055.238 kb on + strand at 3055.239 kb on - strand at 3055.294 kb on - strand at 3055.330 kb on - strand at 3055.330 kb on - strand at 3055.330 kb on - strand at 3055.335 kb on + strand at 3055.335 kb on + strand at 3055.336 kb on - strand at 3055.402 kb on - strand at 3055.413 kb on - strand at 3055.413 kb on - strand at 3055.414 kb on + strand at 3055.414 kb on + strand at 3055.415 kb on - strand at 3055.415 kb on - strand at 3055.415 kb on - strand at 3055.415 kb on - strand at 3055.415 kb on - strand at 3055.418 kb on + strand at 3055.435 kb on - strand at 3055.454 kb on - strand at 3055.456 kb on + strand at 3055.456 kb on + strand at 3055.457 kb on - strand at 3055.459 kb on - strand at 3055.459 kb on - strand at 3055.459 kb on - strand at 3055.459 kb on - strand at 3055.462 kb on - strand at 3055.566 kb on - strand at 3055.566 kb on - strand at 3055.578 kb on + strand at 3055.579 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 3,053,042 - CA264_13090 0.41 +1.3 3,053,042 - CA264_13090 0.41 -0.4 3,053,071 + CA264_13090 0.44 +0.2 3,053,112 + CA264_13090 0.47 -0.4 3,053,112 + CA264_13090 0.47 -0.4 3,053,112 + CA264_13090 0.47 -0.9 3,053,115 + CA264_13090 0.48 -0.4 3,053,115 + CA264_13090 0.48 -0.2 3,053,116 - CA264_13090 0.48 -0.2 3,053,116 - CA264_13090 0.48 +0.0 3,053,116 - CA264_13090 0.48 +0.8 3,053,116 - CA264_13090 0.48 +0.0 3,053,214 + CA264_13090 0.57 +0.5 3,053,215 - CA264_13090 0.57 -0.9 3,053,215 - CA264_13090 0.57 -0.2 3,053,222 - CA264_13090 0.58 -0.1 3,053,308 + CA264_13090 0.66 +0.1 3,053,560 - CA264_13090 0.89 +0.0 3,053,699 + -0.6 3,053,700 - -0.2 3,053,805 - +1.8 3,053,805 - +0.0 3,053,805 - -0.6 3,053,812 - +1.2 3,053,827 + +0.8 3,053,828 - -0.2 3,053,828 - -1.5 3,053,836 - +0.3 3,053,896 + -0.6 3,054,088 - CA264_13095 0.31 -0.3 3,054,088 - CA264_13095 0.31 -0.3 3,054,140 + CA264_13095 0.38 -0.4 3,054,144 + CA264_13095 0.38 -0.4 3,054,144 + CA264_13095 0.38 +0.8 3,054,146 + CA264_13095 0.39 -0.4 3,054,146 + CA264_13095 0.39 -0.1 3,054,147 - CA264_13095 0.39 +0.4 3,054,147 - CA264_13095 0.39 -0.1 3,054,230 + CA264_13095 0.49 -0.7 3,054,230 + CA264_13095 0.49 -1.4 3,054,230 + CA264_13095 0.49 +1.6 3,054,231 - CA264_13095 0.50 +0.3 3,054,232 + CA264_13095 0.50 -0.8 3,054,233 - CA264_13095 0.50 +0.7 3,054,233 - CA264_13095 0.50 +0.1 3,054,274 + CA264_13095 0.55 -2.2 3,054,285 + CA264_13095 0.57 -0.7 3,054,285 + CA264_13095 0.57 +0.9 3,054,307 - CA264_13095 0.59 -2.0 3,054,307 - CA264_13095 0.59 -0.7 3,054,307 - CA264_13095 0.59 -0.1 3,054,307 - CA264_13095 0.59 -0.1 3,054,341 + CA264_13095 0.64 -0.6 3,054,343 + CA264_13095 0.64 -0.0 3,054,343 + CA264_13095 0.64 -0.7 3,054,343 + CA264_13095 0.64 -0.3 3,054,343 + CA264_13095 0.64 -0.8 3,054,344 - CA264_13095 0.64 -0.2 3,054,344 - CA264_13095 0.64 -0.6 3,054,344 - CA264_13095 0.64 -0.1 3,054,344 - CA264_13095 0.64 +0.6 3,054,344 - CA264_13095 0.64 -0.0 3,054,459 + CA264_13095 0.79 +0.1 3,054,566 - -0.8 3,054,618 + -0.6 3,054,618 + +1.7 3,054,618 + +0.2 3,054,638 + -0.4 3,054,638 + +0.4 3,054,638 + +0.4 3,054,639 - -1.2 3,054,639 - -0.2 3,054,692 + -0.9 3,054,700 + -0.2 3,054,719 - -0.9 3,054,719 - -0.2 3,054,721 - -0.9 3,054,721 - -0.5 3,054,749 + -0.4 3,054,751 + -1.1 3,054,811 + +0.8 3,054,812 - -0.7 3,054,823 + -0.0 3,054,887 + +1.2 3,054,888 - -0.9 3,054,908 - +0.9 3,054,922 + +0.7 3,054,923 - -0.8 3,054,931 + +0.1 3,055,072 + +0.0 3,055,155 + -1.4 3,055,164 + +0.4 3,055,164 + -0.6 3,055,164 + +0.5 3,055,165 - -0.8 3,055,165 - -1.2 3,055,189 - -0.2 3,055,196 - -0.7 3,055,206 - +0.5 3,055,238 + +0.3 3,055,238 + +0.3 3,055,239 - -1.4 3,055,294 - -0.9 3,055,330 - -1.9 3,055,330 - +0.2 3,055,330 - -0.4 3,055,335 + -0.2 3,055,335 + +0.5 3,055,336 - -0.7 3,055,402 - -0.5 3,055,413 - -0.8 3,055,413 - -0.7 3,055,414 + -1.0 3,055,414 + -0.4 3,055,415 - -1.2 3,055,415 - +0.9 3,055,415 - -0.3 3,055,415 - -0.4 3,055,415 - +0.7 3,055,418 + -0.8 3,055,435 - -1.8 3,055,454 - -0.4 3,055,456 + +0.8 3,055,456 + +0.8 3,055,457 - -1.3 3,055,459 - -1.1 3,055,459 - -0.9 3,055,459 - -2.1 3,055,459 - -0.8 3,055,462 - -0.2 3,055,566 - -0.4 3,055,566 - -1.3 3,055,578 + +0.2 3,055,579 - -0.3
Or see this region's nucleotide sequence