Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12980

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12975 and CA264_12980 are separated by 289 nucleotidesCA264_12980 and CA264_12985 are separated by 237 nucleotidesCA264_12985 and CA264_12990 are separated by 60 nucleotides CA264_12975: CA264_12975 - S9 family peptidase, at 3,024,331 to 3,026,796 _12975 CA264_12980: CA264_12980 - peptidase M28, at 3,027,086 to 3,028,642 _12980 CA264_12985: CA264_12985 - hypothetical protein, at 3,028,880 to 3,029,173 _12985 CA264_12990: CA264_12990 - ferritin, at 3,029,234 to 3,029,770 _12990 Position (kb) 3027 3028 3029Strain fitness (log2 ratio) -2 -1 0 1 2at 3026.213 kb on - strand, within CA264_12975at 3026.213 kb on - strand, within CA264_12975at 3026.262 kb on - strand, within CA264_12975at 3026.356 kb on - strand, within CA264_12975at 3026.426 kb on - strand, within CA264_12975at 3026.449 kb on + strand, within CA264_12975at 3026.474 kb on + strand, within CA264_12975at 3026.474 kb on + strand, within CA264_12975at 3026.481 kb on - strand, within CA264_12975at 3026.612 kb on - strandat 3026.644 kb on - strandat 3026.811 kb on + strandat 3026.858 kb on + strandat 3026.861 kb on - strandat 3026.861 kb on - strandat 3026.875 kb on + strandat 3026.908 kb on + strandat 3026.986 kb on - strandat 3027.077 kb on + strandat 3027.389 kb on + strand, within CA264_12980at 3027.389 kb on + strand, within CA264_12980at 3027.521 kb on + strand, within CA264_12980at 3027.522 kb on - strand, within CA264_12980at 3027.549 kb on + strand, within CA264_12980at 3027.549 kb on + strand, within CA264_12980at 3027.549 kb on + strand, within CA264_12980at 3027.549 kb on + strand, within CA264_12980at 3027.549 kb on + strand, within CA264_12980at 3027.550 kb on - strand, within CA264_12980at 3027.692 kb on + strand, within CA264_12980at 3027.714 kb on + strand, within CA264_12980at 3027.714 kb on + strand, within CA264_12980at 3027.715 kb on - strand, within CA264_12980at 3027.816 kb on - strand, within CA264_12980at 3027.878 kb on - strand, within CA264_12980at 3027.909 kb on + strand, within CA264_12980at 3028.113 kb on + strand, within CA264_12980at 3028.200 kb on - strand, within CA264_12980at 3028.272 kb on - strand, within CA264_12980at 3028.274 kb on - strand, within CA264_12980at 3028.462 kb on - strand, within CA264_12980at 3028.474 kb on - strand, within CA264_12980at 3028.474 kb on - strand, within CA264_12980at 3028.474 kb on - strand, within CA264_12980at 3028.478 kb on + strand, within CA264_12980at 3028.478 kb on + strand, within CA264_12980at 3028.573 kb on - strandat 3028.573 kb on - strandat 3028.585 kb on + strandat 3028.586 kb on - strandat 3028.586 kb on - strandat 3028.666 kb on - strandat 3028.764 kb on + strandat 3028.765 kb on - strandat 3028.769 kb on + strandat 3028.771 kb on + strandat 3028.771 kb on + strandat 3028.832 kb on + strandat 3028.842 kb on + strandat 3028.843 kb on - strandat 3028.877 kb on + strandat 3028.877 kb on + strandat 3028.895 kb on - strandat 3028.895 kb on - strandat 3028.911 kb on + strand, within CA264_12985at 3028.911 kb on + strand, within CA264_12985at 3028.912 kb on - strand, within CA264_12985at 3028.916 kb on + strand, within CA264_12985at 3028.916 kb on + strand, within CA264_12985at 3028.917 kb on - strand, within CA264_12985at 3028.917 kb on - strand, within CA264_12985at 3028.920 kb on + strand, within CA264_12985at 3028.920 kb on + strand, within CA264_12985at 3028.920 kb on + strand, within CA264_12985at 3028.920 kb on + strand, within CA264_12985at 3028.921 kb on - strand, within CA264_12985at 3028.921 kb on - strand, within CA264_12985at 3029.063 kb on - strand, within CA264_12985at 3029.068 kb on + strand, within CA264_12985at 3029.069 kb on - strand, within CA264_12985at 3029.069 kb on - strand, within CA264_12985at 3029.218 kb on + strandat 3029.229 kb on + strandat 3029.289 kb on + strand, within CA264_12990at 3029.349 kb on + strand, within CA264_12990at 3029.350 kb on - strand, within CA264_12990at 3029.350 kb on - strand, within CA264_12990at 3029.350 kb on - strand, within CA264_12990at 3029.384 kb on + strand, within CA264_12990at 3029.404 kb on - strand, within CA264_12990at 3029.460 kb on - strand, within CA264_12990at 3029.525 kb on + strand, within CA264_12990at 3029.526 kb on - strand, within CA264_12990at 3029.615 kb on - strand, within CA264_12990

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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3,026,213 - CA264_12975 0.76 -0.3
3,026,213 - CA264_12975 0.76 +0.3
3,026,262 - CA264_12975 0.78 -1.4
3,026,356 - CA264_12975 0.82 -0.1
3,026,426 - CA264_12975 0.85 +0.5
3,026,449 + CA264_12975 0.86 +0.3
3,026,474 + CA264_12975 0.87 -0.6
3,026,474 + CA264_12975 0.87 -0.2
3,026,481 - CA264_12975 0.87 -0.2
3,026,612 - -0.1
3,026,644 - -0.6
3,026,811 + -0.1
3,026,858 + +0.0
3,026,861 - -0.5
3,026,861 - -0.0
3,026,875 + -0.3
3,026,908 + +0.3
3,026,986 - +0.5
3,027,077 + -1.2
3,027,389 + CA264_12980 0.19 -0.0
3,027,389 + CA264_12980 0.19 -0.1
3,027,521 + CA264_12980 0.28 -0.5
3,027,522 - CA264_12980 0.28 -1.3
3,027,549 + CA264_12980 0.30 -0.1
3,027,549 + CA264_12980 0.30 +1.2
3,027,549 + CA264_12980 0.30 +0.4
3,027,549 + CA264_12980 0.30 -0.5
3,027,549 + CA264_12980 0.30 -1.2
3,027,550 - CA264_12980 0.30 -0.9
3,027,692 + CA264_12980 0.39 +0.1
3,027,714 + CA264_12980 0.40 -0.5
3,027,714 + CA264_12980 0.40 +0.5
3,027,715 - CA264_12980 0.40 -0.6
3,027,816 - CA264_12980 0.47 +0.4
3,027,878 - CA264_12980 0.51 -0.7
3,027,909 + CA264_12980 0.53 +0.8
3,028,113 + CA264_12980 0.66 +1.4
3,028,200 - CA264_12980 0.72 -0.2
3,028,272 - CA264_12980 0.76 -1.1
3,028,274 - CA264_12980 0.76 +1.1
3,028,462 - CA264_12980 0.88 +0.5
3,028,474 - CA264_12980 0.89 -0.4
3,028,474 - CA264_12980 0.89 -0.0
3,028,474 - CA264_12980 0.89 +0.0
3,028,478 + CA264_12980 0.89 +0.2
3,028,478 + CA264_12980 0.89 +1.0
3,028,573 - +1.4
3,028,573 - +0.1
3,028,585 + +0.3
3,028,586 - +0.0
3,028,586 - +0.8
3,028,666 - +0.4
3,028,764 + +0.7
3,028,765 - +0.2
3,028,769 + +0.3
3,028,771 + +0.9
3,028,771 + +1.0
3,028,832 + +0.3
3,028,842 + +0.6
3,028,843 - +0.2
3,028,877 + +0.4
3,028,877 + +2.0
3,028,895 - +0.7
3,028,895 - +0.5
3,028,911 + CA264_12985 0.11 -1.0
3,028,911 + CA264_12985 0.11 -0.8
3,028,912 - CA264_12985 0.11 +1.0
3,028,916 + CA264_12985 0.12 -0.6
3,028,916 + CA264_12985 0.12 +0.4
3,028,917 - CA264_12985 0.13 +0.4
3,028,917 - CA264_12985 0.13 -0.4
3,028,920 + CA264_12985 0.14 -2.1
3,028,920 + CA264_12985 0.14 +0.9
3,028,920 + CA264_12985 0.14 +0.0
3,028,920 + CA264_12985 0.14 +0.4
3,028,921 - CA264_12985 0.14 +0.9
3,028,921 - CA264_12985 0.14 +0.4
3,029,063 - CA264_12985 0.62 -0.5
3,029,068 + CA264_12985 0.64 +0.0
3,029,069 - CA264_12985 0.64 -0.8
3,029,069 - CA264_12985 0.64 +0.3
3,029,218 + -0.6
3,029,229 + -0.6
3,029,289 + CA264_12990 0.10 -0.6
3,029,349 + CA264_12990 0.21 -0.5
3,029,350 - CA264_12990 0.22 +0.8
3,029,350 - CA264_12990 0.22 +0.4
3,029,350 - CA264_12990 0.22 +0.9
3,029,384 + CA264_12990 0.28 -0.9
3,029,404 - CA264_12990 0.32 +0.0
3,029,460 - CA264_12990 0.42 +0.6
3,029,525 + CA264_12990 0.54 +0.0
3,029,526 - CA264_12990 0.54 +1.6
3,029,615 - CA264_12990 0.71 +0.3

Or see this region's nucleotide sequence