Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11955

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11950 and CA264_11955 are separated by 47 nucleotidesCA264_11955 and CA264_11960 are separated by 59 nucleotides CA264_11950: CA264_11950 - transketolase, at 2,777,484 to 2,778,341 _11950 CA264_11955: CA264_11955 - VWA domain-containing protein, at 2,778,389 to 2,779,774 _11955 CA264_11960: CA264_11960 - transketolase, at 2,779,834 to 2,780,793 _11960 Position (kb) 2778 2779 2780Strain fitness (log2 ratio) -1 0 1 2at 2777.398 kb on + strandat 2777.430 kb on + strandat 2777.430 kb on + strandat 2777.430 kb on + strandat 2777.430 kb on + strandat 2777.477 kb on - strandat 2778.385 kb on + strandat 2778.385 kb on + strandat 2778.582 kb on + strand, within CA264_11955at 2778.582 kb on + strand, within CA264_11955at 2778.583 kb on - strand, within CA264_11955at 2778.664 kb on + strand, within CA264_11955at 2778.764 kb on + strand, within CA264_11955at 2778.765 kb on - strand, within CA264_11955at 2778.954 kb on + strand, within CA264_11955at 2778.955 kb on - strand, within CA264_11955at 2779.056 kb on + strand, within CA264_11955at 2779.114 kb on - strand, within CA264_11955at 2779.140 kb on - strand, within CA264_11955at 2779.145 kb on + strand, within CA264_11955at 2779.146 kb on - strand, within CA264_11955at 2779.146 kb on - strand, within CA264_11955at 2779.166 kb on - strand, within CA264_11955at 2779.203 kb on + strand, within CA264_11955at 2779.208 kb on + strand, within CA264_11955at 2779.221 kb on + strand, within CA264_11955at 2779.222 kb on - strand, within CA264_11955at 2779.290 kb on + strand, within CA264_11955at 2779.290 kb on + strand, within CA264_11955at 2779.290 kb on + strand, within CA264_11955at 2779.311 kb on + strand, within CA264_11955at 2779.311 kb on + strand, within CA264_11955at 2779.312 kb on - strand, within CA264_11955at 2779.312 kb on - strand, within CA264_11955at 2779.313 kb on + strand, within CA264_11955at 2779.313 kb on + strand, within CA264_11955at 2779.313 kb on + strand, within CA264_11955at 2779.436 kb on + strand, within CA264_11955at 2779.437 kb on - strand, within CA264_11955at 2779.618 kb on - strand, within CA264_11955at 2779.667 kb on - strandat 2779.676 kb on + strandat 2779.682 kb on - strandat 2779.717 kb on - strandat 2779.717 kb on - strandat 2779.772 kb on + strandat 2779.776 kb on - strandat 2779.815 kb on + strandat 2779.830 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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2,777,398 + +0.7
2,777,430 + +0.4
2,777,430 + +0.2
2,777,430 + +1.5
2,777,430 + +0.5
2,777,477 - +0.3
2,778,385 + +0.5
2,778,385 + -0.5
2,778,582 + CA264_11955 0.14 +0.7
2,778,582 + CA264_11955 0.14 +1.3
2,778,583 - CA264_11955 0.14 +0.6
2,778,664 + CA264_11955 0.20 +1.0
2,778,764 + CA264_11955 0.27 +1.1
2,778,765 - CA264_11955 0.27 +0.1
2,778,954 + CA264_11955 0.41 +1.2
2,778,955 - CA264_11955 0.41 -0.2
2,779,056 + CA264_11955 0.48 +0.9
2,779,114 - CA264_11955 0.52 +0.6
2,779,140 - CA264_11955 0.54 -1.5
2,779,145 + CA264_11955 0.55 +0.8
2,779,146 - CA264_11955 0.55 +0.0
2,779,146 - CA264_11955 0.55 +0.9
2,779,166 - CA264_11955 0.56 +0.6
2,779,203 + CA264_11955 0.59 +0.8
2,779,208 + CA264_11955 0.59 +1.5
2,779,221 + CA264_11955 0.60 +0.8
2,779,222 - CA264_11955 0.60 +0.4
2,779,290 + CA264_11955 0.65 +0.9
2,779,290 + CA264_11955 0.65 +1.0
2,779,290 + CA264_11955 0.65 +1.8
2,779,311 + CA264_11955 0.67 +1.5
2,779,311 + CA264_11955 0.67 +1.4
2,779,312 - CA264_11955 0.67 +0.6
2,779,312 - CA264_11955 0.67 +0.7
2,779,313 + CA264_11955 0.67 -0.0
2,779,313 + CA264_11955 0.67 +0.5
2,779,313 + CA264_11955 0.67 +1.7
2,779,436 + CA264_11955 0.76 +0.5
2,779,437 - CA264_11955 0.76 -0.7
2,779,618 - CA264_11955 0.89 +1.8
2,779,667 - +1.4
2,779,676 + +0.9
2,779,682 - +1.4
2,779,717 - -0.6
2,779,717 - -0.1
2,779,772 + +1.1
2,779,776 - +1.5
2,779,815 + +0.4
2,779,830 - -1.3

Or see this region's nucleotide sequence