Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11670

Experiment: m.b. A22 0.04 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_11665 and CA264_11670 are separated by 500 nucleotidesCA264_11670 and CA264_11675 are separated by 46 nucleotidesCA264_11675 and CA264_11680 are separated by 226 nucleotides CA264_11665: CA264_11665 - DDE transposase, at 2,720,343 to 2,721,113 _11665 CA264_11670: CA264_11670 - DNA repair protein, at 2,721,614 to 2,722,084 _11670 CA264_11675: CA264_11675 - hypothetical protein, at 2,722,131 to 2,722,784 _11675 CA264_11680: CA264_11680 - hypothetical protein, at 2,723,011 to 2,723,691 _11680 Position (kb) 2721 2722 2723Strain fitness (log2 ratio) -2 -1 0 1 2at 2720.721 kb on + strand, within CA264_11665at 2720.820 kb on + strand, within CA264_11665at 2720.821 kb on - strand, within CA264_11665at 2720.924 kb on - strand, within CA264_11665at 2720.924 kb on - strand, within CA264_11665at 2720.926 kb on + strand, within CA264_11665at 2720.927 kb on - strand, within CA264_11665at 2720.930 kb on - strand, within CA264_11665at 2721.113 kb on + strandat 2721.136 kb on - strandat 2721.136 kb on - strandat 2721.193 kb on + strandat 2721.217 kb on + strandat 2721.227 kb on - strandat 2721.272 kb on - strandat 2721.277 kb on + strandat 2721.285 kb on + strandat 2721.286 kb on - strandat 2721.323 kb on + strandat 2721.367 kb on - strandat 2721.370 kb on + strandat 2721.380 kb on + strandat 2721.381 kb on - strandat 2721.402 kb on + strandat 2721.402 kb on + strandat 2721.403 kb on - strandat 2721.404 kb on + strandat 2721.456 kb on - strandat 2721.485 kb on - strandat 2721.628 kb on + strandat 2721.660 kb on + strandat 2721.661 kb on - strand, within CA264_11670at 2721.709 kb on + strand, within CA264_11670at 2721.710 kb on - strand, within CA264_11670at 2721.710 kb on - strand, within CA264_11670at 2721.728 kb on + strand, within CA264_11670at 2721.728 kb on + strand, within CA264_11670at 2721.728 kb on + strand, within CA264_11670at 2721.729 kb on - strand, within CA264_11670at 2721.828 kb on - strand, within CA264_11670at 2721.969 kb on + strand, within CA264_11670at 2722.006 kb on - strand, within CA264_11670at 2722.006 kb on - strand, within CA264_11670at 2722.080 kb on + strandat 2722.081 kb on - strandat 2722.082 kb on + strandat 2722.112 kb on + strandat 2722.112 kb on + strandat 2722.159 kb on + strandat 2722.268 kb on + strand, within CA264_11675at 2722.268 kb on + strand, within CA264_11675at 2722.283 kb on + strand, within CA264_11675at 2722.283 kb on + strand, within CA264_11675at 2722.283 kb on + strand, within CA264_11675at 2722.284 kb on - strand, within CA264_11675at 2722.284 kb on - strand, within CA264_11675at 2722.284 kb on - strand, within CA264_11675at 2722.289 kb on - strand, within CA264_11675at 2722.289 kb on - strand, within CA264_11675at 2722.289 kb on - strand, within CA264_11675at 2722.325 kb on + strand, within CA264_11675at 2722.325 kb on + strand, within CA264_11675at 2722.325 kb on + strand, within CA264_11675at 2722.339 kb on + strand, within CA264_11675at 2722.381 kb on + strand, within CA264_11675at 2722.381 kb on + strand, within CA264_11675at 2722.381 kb on + strand, within CA264_11675at 2722.382 kb on - strand, within CA264_11675at 2722.457 kb on + strand, within CA264_11675at 2722.463 kb on + strand, within CA264_11675at 2722.463 kb on + strand, within CA264_11675at 2722.506 kb on - strand, within CA264_11675at 2722.556 kb on - strand, within CA264_11675at 2722.556 kb on - strand, within CA264_11675at 2722.570 kb on + strand, within CA264_11675at 2722.570 kb on + strand, within CA264_11675at 2722.571 kb on - strand, within CA264_11675at 2722.594 kb on - strand, within CA264_11675at 2722.611 kb on + strand, within CA264_11675at 2722.620 kb on + strand, within CA264_11675at 2722.649 kb on - strand, within CA264_11675at 2722.665 kb on + strand, within CA264_11675at 2722.665 kb on + strand, within CA264_11675at 2722.666 kb on - strand, within CA264_11675at 2722.666 kb on - strand, within CA264_11675at 2722.668 kb on + strand, within CA264_11675at 2722.690 kb on + strand, within CA264_11675at 2722.760 kb on + strandat 2722.761 kb on - strandat 2722.769 kb on + strandat 2722.769 kb on + strandat 2722.772 kb on + strandat 2722.773 kb on - strandat 2722.793 kb on + strandat 2722.794 kb on - strandat 2722.794 kb on - strandat 2722.794 kb on - strandat 2722.795 kb on + strandat 2722.795 kb on + strandat 2722.797 kb on + strandat 2722.829 kb on + strandat 2722.831 kb on + strandat 2722.835 kb on + strandat 2722.835 kb on + strandat 2722.835 kb on + strandat 2722.835 kb on + strandat 2722.835 kb on + strandat 2722.836 kb on - strandat 2722.836 kb on - strandat 2722.837 kb on + strandat 2722.837 kb on + strandat 2722.894 kb on + strandat 2722.894 kb on + strandat 2722.897 kb on - strandat 2722.913 kb on - strandat 2722.913 kb on - strandat 2722.914 kb on + strandat 2722.914 kb on + strandat 2722.914 kb on + strandat 2722.914 kb on + strandat 2722.914 kb on + strandat 2722.914 kb on + strandat 2722.915 kb on - strandat 2722.919 kb on - strandat 2722.946 kb on - strandat 2722.946 kb on - strandat 2722.946 kb on - strandat 2723.010 kb on + strandat 2723.010 kb on + strandat 2723.057 kb on + strandat 2723.058 kb on - strandat 2723.058 kb on - strandat 2723.058 kb on - strandat 2723.058 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
remove
2,720,721 + CA264_11665 0.49 +0.4
2,720,820 + CA264_11665 0.62 +0.5
2,720,821 - CA264_11665 0.62 -2.5
2,720,924 - CA264_11665 0.75 -0.4
2,720,924 - CA264_11665 0.75 +1.5
2,720,926 + CA264_11665 0.76 -0.1
2,720,927 - CA264_11665 0.76 -0.9
2,720,930 - CA264_11665 0.76 -0.2
2,721,113 + +0.7
2,721,136 - -0.1
2,721,136 - -0.1
2,721,193 + -0.4
2,721,217 + +0.5
2,721,227 - +0.3
2,721,272 - -0.5
2,721,277 + +1.2
2,721,285 + +0.2
2,721,286 - -0.1
2,721,323 + +0.6
2,721,367 - -0.3
2,721,370 + -0.4
2,721,380 + +1.0
2,721,381 - -1.1
2,721,402 + +1.4
2,721,402 + -1.9
2,721,403 - -0.2
2,721,404 + -1.1
2,721,456 - -0.1
2,721,485 - +1.2
2,721,628 + -1.7
2,721,660 + -1.2
2,721,661 - CA264_11670 0.10 +0.3
2,721,709 + CA264_11670 0.20 -1.8
2,721,710 - CA264_11670 0.20 +0.4
2,721,710 - CA264_11670 0.20 +0.9
2,721,728 + CA264_11670 0.24 +1.0
2,721,728 + CA264_11670 0.24 -0.5
2,721,728 + CA264_11670 0.24 -1.1
2,721,729 - CA264_11670 0.24 +0.9
2,721,828 - CA264_11670 0.45 +0.3
2,721,969 + CA264_11670 0.75 -0.1
2,722,006 - CA264_11670 0.83 +0.2
2,722,006 - CA264_11670 0.83 +0.5
2,722,080 + -0.8
2,722,081 - +0.9
2,722,082 + -1.6
2,722,112 + -0.1
2,722,112 + -0.9
2,722,159 + -1.8
2,722,268 + CA264_11675 0.21 -0.6
2,722,268 + CA264_11675 0.21 +0.2
2,722,283 + CA264_11675 0.23 -0.5
2,722,283 + CA264_11675 0.23 -1.2
2,722,283 + CA264_11675 0.23 -0.7
2,722,284 - CA264_11675 0.23 +0.7
2,722,284 - CA264_11675 0.23 -0.3
2,722,284 - CA264_11675 0.23 +1.0
2,722,289 - CA264_11675 0.24 +0.4
2,722,289 - CA264_11675 0.24 +0.6
2,722,289 - CA264_11675 0.24 -1.2
2,722,325 + CA264_11675 0.30 +1.0
2,722,325 + CA264_11675 0.30 -1.5
2,722,325 + CA264_11675 0.30 +0.1
2,722,339 + CA264_11675 0.32 -0.8
2,722,381 + CA264_11675 0.38 -0.5
2,722,381 + CA264_11675 0.38 +1.6
2,722,381 + CA264_11675 0.38 -1.9
2,722,382 - CA264_11675 0.38 +0.1
2,722,457 + CA264_11675 0.50 -1.1
2,722,463 + CA264_11675 0.51 +0.8
2,722,463 + CA264_11675 0.51 -1.2
2,722,506 - CA264_11675 0.57 -0.2
2,722,556 - CA264_11675 0.65 +0.3
2,722,556 - CA264_11675 0.65 +1.4
2,722,570 + CA264_11675 0.67 -0.2
2,722,570 + CA264_11675 0.67 -0.4
2,722,571 - CA264_11675 0.67 +0.3
2,722,594 - CA264_11675 0.71 +0.6
2,722,611 + CA264_11675 0.73 -0.2
2,722,620 + CA264_11675 0.75 +0.4
2,722,649 - CA264_11675 0.79 -0.5
2,722,665 + CA264_11675 0.82 +0.5
2,722,665 + CA264_11675 0.82 -0.9
2,722,666 - CA264_11675 0.82 +0.5
2,722,666 - CA264_11675 0.82 -0.6
2,722,668 + CA264_11675 0.82 -0.4
2,722,690 + CA264_11675 0.85 +0.1
2,722,760 + -0.5
2,722,761 - +0.2
2,722,769 + +0.5
2,722,769 + +0.1
2,722,772 + -0.3
2,722,773 - +0.7
2,722,793 + -0.4
2,722,794 - +0.0
2,722,794 - +0.5
2,722,794 - -1.6
2,722,795 + -0.3
2,722,795 + +0.2
2,722,797 + -0.0
2,722,829 + +0.2
2,722,831 + +0.5
2,722,835 + +0.1
2,722,835 + +0.4
2,722,835 + +0.6
2,722,835 + +0.4
2,722,835 + -0.9
2,722,836 - -0.1
2,722,836 - +0.0
2,722,837 + +0.0
2,722,837 + +1.3
2,722,894 + +0.2
2,722,894 + -0.3
2,722,897 - +0.2
2,722,913 - +0.0
2,722,913 - +0.5
2,722,914 + +0.4
2,722,914 + +0.5
2,722,914 + -0.5
2,722,914 + +0.4
2,722,914 + +2.4
2,722,914 + -0.5
2,722,915 - -1.3
2,722,919 - +0.6
2,722,946 - -0.8
2,722,946 - -0.1
2,722,946 - +0.8
2,723,010 + -0.4
2,723,010 + -0.9
2,723,057 + -0.2
2,723,058 - +0.7
2,723,058 - +0.4
2,723,058 - +0.0
2,723,058 - +1.3

Or see this region's nucleotide sequence