Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10555

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10550 and CA264_10555 are separated by 121 nucleotidesCA264_10555 and CA264_10560 are separated by 225 nucleotides CA264_10550: CA264_10550 - hypothetical protein, at 2,445,041 to 2,446,348 _10550 CA264_10555: CA264_10555 - AraC family transcriptional regulator, at 2,446,470 to 2,447,375 _10555 CA264_10560: CA264_10560 - MBL fold metallo-hydrolase, at 2,447,601 to 2,448,413 _10560 Position (kb) 2446 2447 2448Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2445.671 kb on + strand, within CA264_10550at 2445.671 kb on + strand, within CA264_10550at 2445.672 kb on - strand, within CA264_10550at 2445.674 kb on + strand, within CA264_10550at 2445.674 kb on + strand, within CA264_10550at 2445.788 kb on - strand, within CA264_10550at 2446.001 kb on - strand, within CA264_10550at 2446.281 kb on + strandat 2446.281 kb on + strandat 2446.282 kb on - strandat 2446.282 kb on - strandat 2446.286 kb on + strandat 2446.286 kb on + strandat 2446.360 kb on + strandat 2446.361 kb on - strandat 2446.361 kb on - strandat 2446.361 kb on - strandat 2446.385 kb on + strandat 2446.407 kb on + strandat 2446.407 kb on + strandat 2446.408 kb on - strandat 2446.412 kb on - strandat 2446.427 kb on + strandat 2446.428 kb on - strandat 2446.443 kb on + strandat 2446.443 kb on + strandat 2446.443 kb on + strandat 2446.444 kb on - strandat 2446.465 kb on - strandat 2446.465 kb on - strandat 2446.467 kb on - strandat 2446.470 kb on - strandat 2446.475 kb on - strandat 2446.475 kb on - strandat 2446.545 kb on + strandat 2446.546 kb on - strandat 2446.611 kb on + strand, within CA264_10555at 2446.614 kb on + strand, within CA264_10555at 2446.615 kb on - strand, within CA264_10555at 2446.633 kb on + strand, within CA264_10555at 2446.818 kb on + strand, within CA264_10555at 2446.819 kb on - strand, within CA264_10555at 2446.835 kb on + strand, within CA264_10555at 2446.835 kb on + strand, within CA264_10555at 2446.836 kb on - strand, within CA264_10555at 2446.836 kb on - strand, within CA264_10555at 2446.836 kb on - strand, within CA264_10555at 2446.836 kb on - strand, within CA264_10555at 2446.987 kb on - strand, within CA264_10555at 2447.040 kb on + strand, within CA264_10555at 2447.082 kb on + strand, within CA264_10555at 2447.082 kb on + strand, within CA264_10555at 2447.082 kb on + strand, within CA264_10555at 2447.082 kb on + strand, within CA264_10555at 2447.082 kb on + strand, within CA264_10555at 2447.083 kb on - strand, within CA264_10555at 2447.083 kb on - strand, within CA264_10555at 2447.083 kb on - strand, within CA264_10555at 2447.106 kb on + strand, within CA264_10555at 2447.106 kb on + strand, within CA264_10555at 2447.107 kb on - strand, within CA264_10555at 2447.107 kb on - strand, within CA264_10555at 2447.109 kb on + strand, within CA264_10555at 2447.109 kb on + strand, within CA264_10555at 2447.110 kb on - strand, within CA264_10555at 2447.163 kb on + strand, within CA264_10555at 2447.164 kb on - strand, within CA264_10555at 2447.164 kb on - strand, within CA264_10555at 2447.248 kb on + strand, within CA264_10555at 2447.248 kb on + strand, within CA264_10555at 2447.289 kb on + strandat 2447.307 kb on - strandat 2447.374 kb on - strandat 2447.449 kb on + strandat 2447.450 kb on - strandat 2447.480 kb on - strandat 2447.530 kb on + strandat 2447.530 kb on + strandat 2447.531 kb on - strandat 2447.576 kb on + strandat 2447.870 kb on - strand, within CA264_10560at 2447.913 kb on + strand, within CA264_10560at 2447.949 kb on - strand, within CA264_10560at 2447.949 kb on - strand, within CA264_10560at 2447.964 kb on + strand, within CA264_10560at 2447.967 kb on + strand, within CA264_10560at 2447.968 kb on - strand, within CA264_10560at 2448.040 kb on + strand, within CA264_10560at 2448.041 kb on - strand, within CA264_10560at 2448.198 kb on + strand, within CA264_10560at 2448.199 kb on - strand, within CA264_10560at 2448.230 kb on + strand, within CA264_10560at 2448.230 kb on + strand, within CA264_10560at 2448.230 kb on + strand, within CA264_10560at 2448.231 kb on - strand, within CA264_10560at 2448.231 kb on - strand, within CA264_10560at 2448.231 kb on - strand, within CA264_10560at 2448.231 kb on - strand, within CA264_10560at 2448.234 kb on + strand, within CA264_10560at 2448.234 kb on + strand, within CA264_10560at 2448.234 kb on + strand, within CA264_10560at 2448.234 kb on + strand, within CA264_10560at 2448.234 kb on + strand, within CA264_10560at 2448.234 kb on + strand, within CA264_10560at 2448.235 kb on - strand, within CA264_10560at 2448.235 kb on - strand, within CA264_10560at 2448.235 kb on - strand, within CA264_10560at 2448.240 kb on + strand, within CA264_10560at 2448.282 kb on - strand, within CA264_10560at 2448.282 kb on - strand, within CA264_10560at 2448.283 kb on + strand, within CA264_10560at 2448.283 kb on + strand, within CA264_10560

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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2,445,671 + CA264_10550 0.48 +0.3
2,445,671 + CA264_10550 0.48 -0.0
2,445,672 - CA264_10550 0.48 +1.8
2,445,674 + CA264_10550 0.48 +0.0
2,445,674 + CA264_10550 0.48 +0.4
2,445,788 - CA264_10550 0.57 +3.2
2,446,001 - CA264_10550 0.73 +0.3
2,446,281 + +0.8
2,446,281 + +0.1
2,446,282 - +0.4
2,446,282 - +1.1
2,446,286 + -1.5
2,446,286 + -0.6
2,446,360 + +0.2
2,446,361 - -0.2
2,446,361 - +2.3
2,446,361 - -0.9
2,446,385 + -0.2
2,446,407 + +1.1
2,446,407 + -0.2
2,446,408 - +1.6
2,446,412 - +0.5
2,446,427 + -0.6
2,446,428 - +0.7
2,446,443 + -1.0
2,446,443 + -1.0
2,446,443 + -2.4
2,446,444 - +1.2
2,446,465 - +0.5
2,446,465 - -0.1
2,446,467 - +0.4
2,446,470 - -0.0
2,446,475 - +0.7
2,446,475 - +0.7
2,446,545 + -0.6
2,446,546 - +0.0
2,446,611 + CA264_10555 0.16 -0.7
2,446,614 + CA264_10555 0.16 -0.5
2,446,615 - CA264_10555 0.16 +0.7
2,446,633 + CA264_10555 0.18 -0.7
2,446,818 + CA264_10555 0.38 -1.2
2,446,819 - CA264_10555 0.39 -0.7
2,446,835 + CA264_10555 0.40 -1.3
2,446,835 + CA264_10555 0.40 +0.1
2,446,836 - CA264_10555 0.40 +0.2
2,446,836 - CA264_10555 0.40 +0.8
2,446,836 - CA264_10555 0.40 -0.3
2,446,836 - CA264_10555 0.40 -0.2
2,446,987 - CA264_10555 0.57 +0.1
2,447,040 + CA264_10555 0.63 -0.6
2,447,082 + CA264_10555 0.68 +0.1
2,447,082 + CA264_10555 0.68 -0.7
2,447,082 + CA264_10555 0.68 -0.5
2,447,082 + CA264_10555 0.68 -0.2
2,447,082 + CA264_10555 0.68 +0.0
2,447,083 - CA264_10555 0.68 -0.5
2,447,083 - CA264_10555 0.68 +1.4
2,447,083 - CA264_10555 0.68 +1.8
2,447,106 + CA264_10555 0.70 -0.3
2,447,106 + CA264_10555 0.70 -0.5
2,447,107 - CA264_10555 0.70 +0.2
2,447,107 - CA264_10555 0.70 -0.2
2,447,109 + CA264_10555 0.71 -0.5
2,447,109 + CA264_10555 0.71 -0.8
2,447,110 - CA264_10555 0.71 +0.6
2,447,163 + CA264_10555 0.76 -0.8
2,447,164 - CA264_10555 0.77 +0.4
2,447,164 - CA264_10555 0.77 -0.4
2,447,248 + CA264_10555 0.86 -0.5
2,447,248 + CA264_10555 0.86 -1.0
2,447,289 + +0.8
2,447,307 - +0.6
2,447,374 - -1.3
2,447,449 + +0.5
2,447,450 - -2.3
2,447,480 - +0.2
2,447,530 + -0.4
2,447,530 + -1.8
2,447,531 - +0.1
2,447,576 + +0.7
2,447,870 - CA264_10560 0.33 +0.4
2,447,913 + CA264_10560 0.38 -0.1
2,447,949 - CA264_10560 0.43 +0.9
2,447,949 - CA264_10560 0.43 -0.1
2,447,964 + CA264_10560 0.45 +0.2
2,447,967 + CA264_10560 0.45 -0.6
2,447,968 - CA264_10560 0.45 +0.8
2,448,040 + CA264_10560 0.54 +0.8
2,448,041 - CA264_10560 0.54 +0.5
2,448,198 + CA264_10560 0.73 +0.1
2,448,199 - CA264_10560 0.74 +1.0
2,448,230 + CA264_10560 0.77 +1.3
2,448,230 + CA264_10560 0.77 +0.5
2,448,230 + CA264_10560 0.77 -0.1
2,448,231 - CA264_10560 0.77 +0.0
2,448,231 - CA264_10560 0.77 -1.6
2,448,231 - CA264_10560 0.77 -0.3
2,448,231 - CA264_10560 0.77 +0.8
2,448,234 + CA264_10560 0.78 +0.5
2,448,234 + CA264_10560 0.78 -0.9
2,448,234 + CA264_10560 0.78 +0.3
2,448,234 + CA264_10560 0.78 +1.2
2,448,234 + CA264_10560 0.78 +0.7
2,448,234 + CA264_10560 0.78 -0.3
2,448,235 - CA264_10560 0.78 +0.2
2,448,235 - CA264_10560 0.78 +0.4
2,448,235 - CA264_10560 0.78 +1.7
2,448,240 + CA264_10560 0.79 -1.0
2,448,282 - CA264_10560 0.84 +0.2
2,448,282 - CA264_10560 0.84 -0.2
2,448,283 + CA264_10560 0.84 +1.0
2,448,283 + CA264_10560 0.84 -1.1

Or see this region's nucleotide sequence