Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_10040 and CA264_10045 are separated by 82 nucleotides CA264_10045 and CA264_10050 are separated by 420 nucleotides CA264_10050 and CA264_10055 are separated by 53 nucleotides CA264_10055 and CA264_10060 are separated by 35 nucleotides
CA264_10040: CA264_10040 - 5-hydroxyisourate hydrolase, at 2,331,713 to 2,332,120
_10040
CA264_10045: CA264_10045 - hypothetical protein, at 2,332,203 to 2,332,505
_10045
CA264_10050: CA264_10050 - hypothetical protein, at 2,332,926 to 2,333,354
_10050
CA264_10055: CA264_10055 - hypothetical protein, at 2,333,408 to 2,334,052
_10055
CA264_10060: CA264_10060 - two-component sensor histidine kinase, at 2,334,088 to 2,334,921
_10060
Position (kb)
2332
2333
2334 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2331.962 kb on + strand, within CA264_10040 at 2331.981 kb on + strand, within CA264_10040 at 2332.230 kb on + strand at 2332.440 kb on + strand, within CA264_10045 at 2332.440 kb on + strand, within CA264_10045 at 2332.878 kb on + strand at 2332.878 kb on + strand at 2332.881 kb on + strand at 2332.881 kb on + strand at 2332.897 kb on - strand at 2332.901 kb on - strand at 2332.925 kb on + strand at 2332.926 kb on - strand at 2333.064 kb on - strand, within CA264_10050 at 2333.064 kb on - strand, within CA264_10050 at 2333.069 kb on - strand, within CA264_10050 at 2333.069 kb on - strand, within CA264_10050 at 2333.185 kb on - strand, within CA264_10050 at 2333.187 kb on + strand, within CA264_10050 at 2333.187 kb on + strand, within CA264_10050 at 2333.188 kb on - strand, within CA264_10050 at 2333.192 kb on + strand, within CA264_10050 at 2333.315 kb on + strand at 2333.315 kb on + strand at 2333.395 kb on + strand at 2333.395 kb on + strand at 2333.407 kb on + strand at 2333.407 kb on + strand at 2333.407 kb on + strand at 2333.407 kb on + strand at 2333.407 kb on + strand at 2333.408 kb on - strand at 2333.416 kb on + strand at 2333.541 kb on - strand, within CA264_10055 at 2333.586 kb on - strand, within CA264_10055 at 2333.697 kb on + strand, within CA264_10055 at 2333.747 kb on + strand, within CA264_10055 at 2333.761 kb on + strand, within CA264_10055 at 2333.761 kb on + strand, within CA264_10055 at 2333.761 kb on + strand, within CA264_10055 at 2333.791 kb on + strand, within CA264_10055 at 2333.795 kb on + strand, within CA264_10055 at 2333.799 kb on - strand, within CA264_10055 at 2333.799 kb on - strand, within CA264_10055 at 2333.801 kb on + strand, within CA264_10055 at 2333.802 kb on - strand, within CA264_10055 at 2333.802 kb on - strand, within CA264_10055 at 2333.802 kb on - strand, within CA264_10055 at 2333.802 kb on - strand, within CA264_10055 at 2333.806 kb on + strand, within CA264_10055 at 2333.809 kb on - strand, within CA264_10055 at 2333.809 kb on - strand, within CA264_10055 at 2333.890 kb on + strand, within CA264_10055 at 2333.918 kb on - strand, within CA264_10055 at 2333.918 kb on - strand, within CA264_10055 at 2333.956 kb on - strand, within CA264_10055 at 2333.960 kb on + strand, within CA264_10055 at 2333.961 kb on - strand, within CA264_10055 at 2333.995 kb on + strand at 2334.050 kb on + strand at 2334.168 kb on + strand at 2334.168 kb on + strand at 2334.327 kb on + strand, within CA264_10060 at 2334.351 kb on - strand, within CA264_10060
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 2,331,962 + CA264_10040 0.61 -0.7 2,331,981 + CA264_10040 0.66 +2.5 2,332,230 + +2.1 2,332,440 + CA264_10045 0.78 -0.4 2,332,440 + CA264_10045 0.78 +1.0 2,332,878 + -0.2 2,332,878 + +1.2 2,332,881 + +1.3 2,332,881 + -0.1 2,332,897 - +0.6 2,332,901 - -0.2 2,332,925 + -0.0 2,332,926 - -0.8 2,333,064 - CA264_10050 0.32 +0.3 2,333,064 - CA264_10050 0.32 +0.0 2,333,069 - CA264_10050 0.33 +0.4 2,333,069 - CA264_10050 0.33 +0.1 2,333,185 - CA264_10050 0.60 -0.1 2,333,187 + CA264_10050 0.61 +1.1 2,333,187 + CA264_10050 0.61 +1.3 2,333,188 - CA264_10050 0.61 +0.6 2,333,192 + CA264_10050 0.62 +0.4 2,333,315 + +0.4 2,333,315 + +0.3 2,333,395 + -0.8 2,333,395 + -0.8 2,333,407 + +0.9 2,333,407 + -0.1 2,333,407 + -2.1 2,333,407 + -0.9 2,333,407 + -0.9 2,333,408 - -1.4 2,333,416 + -0.9 2,333,541 - CA264_10055 0.21 +0.4 2,333,586 - CA264_10055 0.28 +0.9 2,333,697 + CA264_10055 0.45 -1.4 2,333,747 + CA264_10055 0.53 -0.5 2,333,761 + CA264_10055 0.55 +0.1 2,333,761 + CA264_10055 0.55 +2.7 2,333,761 + CA264_10055 0.55 +0.9 2,333,791 + CA264_10055 0.59 -1.2 2,333,795 + CA264_10055 0.60 -0.5 2,333,799 - CA264_10055 0.61 +0.0 2,333,799 - CA264_10055 0.61 +0.4 2,333,801 + CA264_10055 0.61 -0.2 2,333,802 - CA264_10055 0.61 -0.3 2,333,802 - CA264_10055 0.61 +1.0 2,333,802 - CA264_10055 0.61 +0.8 2,333,802 - CA264_10055 0.61 -0.9 2,333,806 + CA264_10055 0.62 -1.0 2,333,809 - CA264_10055 0.62 -1.5 2,333,809 - CA264_10055 0.62 +1.0 2,333,890 + CA264_10055 0.75 -0.1 2,333,918 - CA264_10055 0.79 +0.3 2,333,918 - CA264_10055 0.79 -0.1 2,333,956 - CA264_10055 0.85 -1.8 2,333,960 + CA264_10055 0.86 -1.9 2,333,961 - CA264_10055 0.86 +0.2 2,333,995 + -0.7 2,334,050 + -0.9 2,334,168 + -3.2 2,334,168 + -1.7 2,334,327 + CA264_10060 0.29 -2.2 2,334,351 - CA264_10060 0.32 +0.3
Or see this region's nucleotide sequence