Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09805

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09800 and CA264_09805 are separated by 467 nucleotidesCA264_09805 and CA264_09810 are separated by 12 nucleotides CA264_09800: CA264_09800 - DNA-binding response regulator, at 2,277,374 to 2,278,096 _09800 CA264_09805: CA264_09805 - hypothetical protein, at 2,278,564 to 2,279,295 _09805 CA264_09810: CA264_09810 - ABC transporter ATP-binding protein, at 2,279,308 to 2,281,584 _09810 Position (kb) 2278 2279 2280Strain fitness (log2 ratio) -2 -1 0 1at 2277.574 kb on - strand, within CA264_09800at 2277.574 kb on - strand, within CA264_09800at 2277.601 kb on - strand, within CA264_09800at 2277.612 kb on + strand, within CA264_09800at 2277.697 kb on + strand, within CA264_09800at 2277.797 kb on - strand, within CA264_09800at 2277.810 kb on + strand, within CA264_09800at 2277.884 kb on + strand, within CA264_09800at 2277.896 kb on + strand, within CA264_09800at 2277.903 kb on - strand, within CA264_09800at 2277.935 kb on + strand, within CA264_09800at 2277.936 kb on - strand, within CA264_09800at 2277.936 kb on - strand, within CA264_09800at 2277.936 kb on - strand, within CA264_09800at 2277.944 kb on - strand, within CA264_09800at 2277.944 kb on - strand, within CA264_09800at 2277.947 kb on + strand, within CA264_09800at 2277.948 kb on - strand, within CA264_09800at 2277.948 kb on - strand, within CA264_09800at 2277.950 kb on + strand, within CA264_09800at 2277.951 kb on - strand, within CA264_09800at 2277.951 kb on - strand, within CA264_09800at 2278.013 kb on + strand, within CA264_09800at 2278.033 kb on + strandat 2278.085 kb on - strandat 2278.132 kb on - strandat 2278.176 kb on + strandat 2278.177 kb on - strandat 2278.177 kb on - strandat 2278.194 kb on - strandat 2278.194 kb on - strandat 2278.255 kb on + strandat 2278.289 kb on + strandat 2278.482 kb on + strandat 2278.566 kb on - strandat 2278.573 kb on + strandat 2278.576 kb on - strandat 2278.576 kb on - strandat 2278.648 kb on + strand, within CA264_09805at 2278.648 kb on + strand, within CA264_09805at 2278.650 kb on + strand, within CA264_09805at 2278.650 kb on + strand, within CA264_09805at 2278.784 kb on + strand, within CA264_09805at 2278.785 kb on - strand, within CA264_09805at 2278.785 kb on - strand, within CA264_09805at 2278.785 kb on - strand, within CA264_09805at 2278.797 kb on + strand, within CA264_09805at 2278.797 kb on + strand, within CA264_09805at 2278.820 kb on - strand, within CA264_09805at 2278.820 kb on - strand, within CA264_09805at 2278.821 kb on + strand, within CA264_09805at 2278.821 kb on + strand, within CA264_09805at 2278.821 kb on + strand, within CA264_09805at 2278.822 kb on - strand, within CA264_09805at 2278.898 kb on + strand, within CA264_09805at 2278.898 kb on + strand, within CA264_09805at 2278.898 kb on + strand, within CA264_09805at 2278.898 kb on + strand, within CA264_09805at 2279.083 kb on + strand, within CA264_09805at 2279.083 kb on + strand, within CA264_09805at 2279.084 kb on - strand, within CA264_09805at 2279.167 kb on + strand, within CA264_09805at 2279.167 kb on + strand, within CA264_09805at 2279.200 kb on - strand, within CA264_09805at 2279.285 kb on + strandat 2279.286 kb on - strandat 2279.295 kb on + strandat 2279.302 kb on + strandat 2279.303 kb on - strandat 2279.352 kb on - strandat 2279.352 kb on - strandat 2279.371 kb on + strandat 2279.372 kb on - strandat 2279.379 kb on + strandat 2279.379 kb on + strandat 2279.380 kb on - strandat 2279.445 kb on + strandat 2279.467 kb on + strandat 2279.533 kb on + strandat 2279.534 kb on - strandat 2279.564 kb on + strand, within CA264_09810at 2279.565 kb on - strand, within CA264_09810at 2279.565 kb on - strand, within CA264_09810at 2279.565 kb on - strand, within CA264_09810at 2279.569 kb on - strand, within CA264_09810at 2279.579 kb on + strand, within CA264_09810at 2279.580 kb on - strand, within CA264_09810at 2279.656 kb on - strand, within CA264_09810at 2279.682 kb on - strand, within CA264_09810at 2279.699 kb on - strand, within CA264_09810at 2279.781 kb on + strand, within CA264_09810at 2279.782 kb on - strand, within CA264_09810at 2279.784 kb on - strand, within CA264_09810at 2279.863 kb on + strand, within CA264_09810at 2279.863 kb on + strand, within CA264_09810at 2279.978 kb on - strand, within CA264_09810at 2280.119 kb on - strand, within CA264_09810at 2280.214 kb on + strand, within CA264_09810at 2280.226 kb on - strand, within CA264_09810at 2280.259 kb on + strand, within CA264_09810at 2280.263 kb on + strand, within CA264_09810at 2280.263 kb on + strand, within CA264_09810at 2280.269 kb on - strand, within CA264_09810at 2280.279 kb on + strand, within CA264_09810

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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2,277,574 - CA264_09800 0.28 -1.0
2,277,574 - CA264_09800 0.28 +1.5
2,277,601 - CA264_09800 0.31 -1.7
2,277,612 + CA264_09800 0.33 +0.4
2,277,697 + CA264_09800 0.45 -1.0
2,277,797 - CA264_09800 0.59 -0.3
2,277,810 + CA264_09800 0.60 +0.2
2,277,884 + CA264_09800 0.71 -1.5
2,277,896 + CA264_09800 0.72 -0.5
2,277,903 - CA264_09800 0.73 -0.5
2,277,935 + CA264_09800 0.78 -1.1
2,277,936 - CA264_09800 0.78 +1.3
2,277,936 - CA264_09800 0.78 +0.1
2,277,936 - CA264_09800 0.78 +0.2
2,277,944 - CA264_09800 0.79 -1.0
2,277,944 - CA264_09800 0.79 -2.4
2,277,947 + CA264_09800 0.79 -2.2
2,277,948 - CA264_09800 0.79 +0.2
2,277,948 - CA264_09800 0.79 +0.2
2,277,950 + CA264_09800 0.80 -0.3
2,277,951 - CA264_09800 0.80 -0.4
2,277,951 - CA264_09800 0.80 -0.3
2,278,013 + CA264_09800 0.88 -2.4
2,278,033 + -1.5
2,278,085 - +0.2
2,278,132 - -1.2
2,278,176 + -0.2
2,278,177 - +1.0
2,278,177 - -0.4
2,278,194 - -0.4
2,278,194 - -0.5
2,278,255 + -0.9
2,278,289 + +0.3
2,278,482 + -0.3
2,278,566 - +1.2
2,278,573 + -1.1
2,278,576 - -0.7
2,278,576 - +0.4
2,278,648 + CA264_09805 0.11 -1.3
2,278,648 + CA264_09805 0.11 -0.5
2,278,650 + CA264_09805 0.12 -0.7
2,278,650 + CA264_09805 0.12 -0.7
2,278,784 + CA264_09805 0.30 -1.7
2,278,785 - CA264_09805 0.30 +0.7
2,278,785 - CA264_09805 0.30 -2.2
2,278,785 - CA264_09805 0.30 -1.1
2,278,797 + CA264_09805 0.32 -0.6
2,278,797 + CA264_09805 0.32 -0.5
2,278,820 - CA264_09805 0.35 -1.1
2,278,820 - CA264_09805 0.35 -1.0
2,278,821 + CA264_09805 0.35 -1.3
2,278,821 + CA264_09805 0.35 -1.1
2,278,821 + CA264_09805 0.35 -0.4
2,278,822 - CA264_09805 0.35 -0.5
2,278,898 + CA264_09805 0.46 -0.1
2,278,898 + CA264_09805 0.46 -2.6
2,278,898 + CA264_09805 0.46 -1.6
2,278,898 + CA264_09805 0.46 -0.6
2,279,083 + CA264_09805 0.71 -0.5
2,279,083 + CA264_09805 0.71 -0.7
2,279,084 - CA264_09805 0.71 -0.2
2,279,167 + CA264_09805 0.82 -0.9
2,279,167 + CA264_09805 0.82 -1.8
2,279,200 - CA264_09805 0.87 -0.8
2,279,285 + -0.5
2,279,286 - -0.6
2,279,295 + +0.1
2,279,302 + +0.8
2,279,303 - -0.6
2,279,352 - +0.4
2,279,352 - -0.3
2,279,371 + -0.5
2,279,372 - -1.0
2,279,379 + +0.0
2,279,379 + -1.7
2,279,380 - -0.8
2,279,445 + -0.8
2,279,467 + -0.6
2,279,533 + -0.7
2,279,534 - -0.3
2,279,564 + CA264_09810 0.11 -1.1
2,279,565 - CA264_09810 0.11 -0.1
2,279,565 - CA264_09810 0.11 -0.7
2,279,565 - CA264_09810 0.11 -0.0
2,279,569 - CA264_09810 0.11 -1.2
2,279,579 + CA264_09810 0.12 -1.7
2,279,580 - CA264_09810 0.12 -1.1
2,279,656 - CA264_09810 0.15 +0.1
2,279,682 - CA264_09810 0.16 -1.3
2,279,699 - CA264_09810 0.17 +0.4
2,279,781 + CA264_09810 0.21 +0.9
2,279,782 - CA264_09810 0.21 +1.5
2,279,784 - CA264_09810 0.21 +0.1
2,279,863 + CA264_09810 0.24 -1.4
2,279,863 + CA264_09810 0.24 -1.4
2,279,978 - CA264_09810 0.29 +0.0
2,280,119 - CA264_09810 0.36 +0.2
2,280,214 + CA264_09810 0.40 -0.7
2,280,226 - CA264_09810 0.40 -0.9
2,280,259 + CA264_09810 0.42 -0.2
2,280,263 + CA264_09810 0.42 +0.5
2,280,263 + CA264_09810 0.42 +0.2
2,280,269 - CA264_09810 0.42 +0.1
2,280,279 + CA264_09810 0.43 -0.0

Or see this region's nucleotide sequence