Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_09310 and CA264_09315 are separated by 173 nucleotides CA264_09315 and CA264_09320 are separated by 82 nucleotides CA264_09320 and CA264_09325 are separated by 271 nucleotides
CA264_09310: CA264_09310 - tryptophan--tRNA ligase, at 2,177,198 to 2,178,172
_09310
CA264_09315: CA264_09315 - DUF5009 domain-containing protein, at 2,178,346 to 2,179,509
_09315
CA264_09320: CA264_09320 - hypothetical protein, at 2,179,592 to 2,180,179
_09320
CA264_09325: CA264_09325 - methylglyoxal synthase, at 2,180,451 to 2,180,816
_09325
Position (kb)
2178
2179
2180 Strain fitness (log2 ratio)
-2
-1
0
1 at 2178.170 kb on + strand at 2178.170 kb on + strand at 2178.194 kb on + strand at 2178.281 kb on - strand at 2178.285 kb on + strand at 2178.286 kb on - strand at 2178.286 kb on - strand at 2178.290 kb on + strand at 2178.290 kb on + strand at 2178.290 kb on + strand at 2178.295 kb on - strand at 2178.301 kb on + strand at 2178.301 kb on + strand at 2178.301 kb on + strand at 2178.338 kb on + strand at 2178.400 kb on + strand at 2178.446 kb on + strand at 2178.447 kb on - strand at 2178.450 kb on - strand at 2178.478 kb on - strand, within CA264_09315 at 2178.517 kb on - strand, within CA264_09315 at 2178.646 kb on - strand, within CA264_09315 at 2178.729 kb on + strand, within CA264_09315 at 2178.773 kb on - strand, within CA264_09315 at 2178.800 kb on - strand, within CA264_09315 at 2178.823 kb on - strand, within CA264_09315 at 2178.955 kb on + strand, within CA264_09315 at 2179.051 kb on - strand, within CA264_09315 at 2179.142 kb on + strand, within CA264_09315 at 2179.142 kb on + strand, within CA264_09315 at 2179.178 kb on - strand, within CA264_09315 at 2179.178 kb on - strand, within CA264_09315 at 2179.178 kb on - strand, within CA264_09315 at 2179.179 kb on + strand, within CA264_09315 at 2179.179 kb on + strand, within CA264_09315 at 2179.180 kb on - strand, within CA264_09315 at 2179.180 kb on - strand, within CA264_09315 at 2179.225 kb on - strand, within CA264_09315 at 2179.225 kb on - strand, within CA264_09315 at 2179.265 kb on - strand, within CA264_09315 at 2179.342 kb on - strand, within CA264_09315 at 2179.344 kb on - strand, within CA264_09315 at 2179.444 kb on + strand at 2179.444 kb on + strand at 2179.445 kb on - strand at 2179.445 kb on - strand at 2179.508 kb on - strand at 2179.508 kb on - strand at 2179.511 kb on - strand at 2179.512 kb on - strand at 2179.512 kb on - strand at 2179.512 kb on - strand at 2179.517 kb on + strand at 2179.518 kb on - strand at 2179.589 kb on + strand at 2179.602 kb on + strand at 2179.626 kb on + strand at 2179.677 kb on - strand, within CA264_09320 at 2179.689 kb on + strand, within CA264_09320 at 2179.740 kb on + strand, within CA264_09320 at 2179.741 kb on - strand, within CA264_09320 at 2179.741 kb on - strand, within CA264_09320 at 2179.799 kb on - strand, within CA264_09320 at 2179.837 kb on - strand, within CA264_09320 at 2179.852 kb on + strand, within CA264_09320 at 2179.853 kb on - strand, within CA264_09320 at 2179.853 kb on - strand, within CA264_09320 at 2179.873 kb on + strand, within CA264_09320 at 2179.874 kb on - strand, within CA264_09320 at 2179.978 kb on + strand, within CA264_09320 at 2180.086 kb on - strand, within CA264_09320 at 2180.147 kb on + strand at 2180.147 kb on + strand at 2180.148 kb on - strand at 2180.152 kb on + strand at 2180.152 kb on + strand at 2180.163 kb on - strand at 2180.220 kb on + strand at 2180.281 kb on + strand at 2180.282 kb on - strand at 2180.282 kb on - strand at 2180.284 kb on - strand at 2180.433 kb on + strand at 2180.433 kb on + strand at 2180.434 kb on - strand at 2180.464 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 2,178,170 + +0.2 2,178,170 + +0.6 2,178,194 + +1.0 2,178,281 - +0.1 2,178,285 + -0.3 2,178,286 - -0.5 2,178,286 - +0.4 2,178,290 + +0.2 2,178,290 + -0.5 2,178,290 + -0.7 2,178,295 - -0.5 2,178,301 + -0.7 2,178,301 + +0.9 2,178,301 + +0.4 2,178,338 + +0.1 2,178,400 + +0.0 2,178,446 + +0.9 2,178,447 - -0.9 2,178,450 - -0.7 2,178,478 - CA264_09315 0.11 +0.5 2,178,517 - CA264_09315 0.15 -0.0 2,178,646 - CA264_09315 0.26 +0.5 2,178,729 + CA264_09315 0.33 +0.0 2,178,773 - CA264_09315 0.37 +0.4 2,178,800 - CA264_09315 0.39 +0.2 2,178,823 - CA264_09315 0.41 +0.7 2,178,955 + CA264_09315 0.52 +0.2 2,179,051 - CA264_09315 0.61 +0.5 2,179,142 + CA264_09315 0.68 +0.3 2,179,142 + CA264_09315 0.68 +1.7 2,179,178 - CA264_09315 0.71 +1.0 2,179,178 - CA264_09315 0.71 +0.4 2,179,178 - CA264_09315 0.71 -0.1 2,179,179 + CA264_09315 0.72 +0.8 2,179,179 + CA264_09315 0.72 +0.6 2,179,180 - CA264_09315 0.72 +0.1 2,179,180 - CA264_09315 0.72 +0.3 2,179,225 - CA264_09315 0.76 -0.8 2,179,225 - CA264_09315 0.76 +0.1 2,179,265 - CA264_09315 0.79 +0.5 2,179,342 - CA264_09315 0.86 -0.5 2,179,344 - CA264_09315 0.86 -0.2 2,179,444 + -0.5 2,179,444 + -0.0 2,179,445 - -0.8 2,179,445 - -0.1 2,179,508 - -0.0 2,179,508 - -1.2 2,179,511 - +0.1 2,179,512 - +0.2 2,179,512 - -0.0 2,179,512 - +0.1 2,179,517 + +0.8 2,179,518 - -1.2 2,179,589 + -0.5 2,179,602 + +0.6 2,179,626 + -0.4 2,179,677 - CA264_09320 0.14 +0.5 2,179,689 + CA264_09320 0.16 -0.6 2,179,740 + CA264_09320 0.25 +0.8 2,179,741 - CA264_09320 0.25 +0.6 2,179,741 - CA264_09320 0.25 +1.2 2,179,799 - CA264_09320 0.35 +0.3 2,179,837 - CA264_09320 0.42 -0.5 2,179,852 + CA264_09320 0.44 +0.2 2,179,853 - CA264_09320 0.44 +0.1 2,179,853 - CA264_09320 0.44 +0.8 2,179,873 + CA264_09320 0.48 -1.0 2,179,874 - CA264_09320 0.48 -0.1 2,179,978 + CA264_09320 0.66 -1.7 2,180,086 - CA264_09320 0.84 +0.1 2,180,147 + -0.9 2,180,147 + -0.3 2,180,148 - +1.0 2,180,152 + -0.3 2,180,152 + -1.6 2,180,163 - -0.7 2,180,220 + -1.0 2,180,281 + -0.3 2,180,282 - -1.1 2,180,282 - -0.2 2,180,284 - -2.0 2,180,433 + -1.0 2,180,433 + +0.4 2,180,434 - -1.2 2,180,464 - -1.5
Or see this region's nucleotide sequence