Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08935

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08930 and CA264_08935 are separated by 100 nucleotidesCA264_08935 and CA264_08940 are separated by 163 nucleotides CA264_08930: CA264_08930 - hypothetical protein, at 2,086,048 to 2,087,070 _08930 CA264_08935: CA264_08935 - nuclease PIN, at 2,087,171 to 2,088,022 _08935 CA264_08940: CA264_08940 - cysteine synthase B, at 2,088,186 to 2,089,070 _08940 Position (kb) 2087 2088 2089Strain fitness (log2 ratio) -2 -1 0 1 2at 2086.176 kb on - strand, within CA264_08930at 2086.193 kb on + strand, within CA264_08930at 2086.193 kb on + strand, within CA264_08930at 2086.193 kb on + strand, within CA264_08930at 2086.546 kb on - strand, within CA264_08930at 2086.546 kb on - strand, within CA264_08930at 2086.613 kb on + strand, within CA264_08930at 2086.614 kb on - strand, within CA264_08930at 2086.752 kb on + strand, within CA264_08930at 2087.035 kb on - strandat 2087.074 kb on + strandat 2087.074 kb on + strandat 2087.084 kb on + strandat 2087.105 kb on - strandat 2087.160 kb on + strandat 2087.305 kb on - strand, within CA264_08935at 2087.305 kb on - strand, within CA264_08935at 2087.324 kb on + strand, within CA264_08935at 2087.325 kb on - strand, within CA264_08935at 2087.415 kb on + strand, within CA264_08935at 2087.453 kb on - strand, within CA264_08935at 2087.614 kb on - strand, within CA264_08935at 2087.617 kb on + strand, within CA264_08935at 2087.618 kb on - strand, within CA264_08935at 2087.632 kb on + strand, within CA264_08935at 2087.635 kb on - strand, within CA264_08935at 2087.650 kb on + strand, within CA264_08935at 2087.650 kb on + strand, within CA264_08935at 2087.693 kb on - strand, within CA264_08935at 2087.693 kb on - strand, within CA264_08935at 2087.800 kb on + strand, within CA264_08935at 2087.801 kb on - strand, within CA264_08935at 2087.801 kb on - strand, within CA264_08935at 2087.801 kb on - strand, within CA264_08935at 2087.887 kb on - strand, within CA264_08935at 2087.930 kb on - strand, within CA264_08935at 2087.932 kb on - strand, within CA264_08935at 2087.932 kb on - strand, within CA264_08935at 2088.023 kb on - strandat 2088.023 kb on - strandat 2088.076 kb on + strandat 2088.076 kb on + strandat 2088.077 kb on - strandat 2088.096 kb on + strandat 2088.096 kb on + strandat 2088.098 kb on + strandat 2088.102 kb on + strandat 2088.102 kb on + strandat 2088.375 kb on + strand, within CA264_08940at 2088.376 kb on - strand, within CA264_08940at 2088.667 kb on + strand, within CA264_08940at 2088.698 kb on - strand, within CA264_08940at 2088.702 kb on + strand, within CA264_08940at 2088.897 kb on + strand, within CA264_08940at 2088.934 kb on + strand, within CA264_08940at 2089.014 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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2,086,176 - CA264_08930 0.13 +0.1
2,086,193 + CA264_08930 0.14 +0.7
2,086,193 + CA264_08930 0.14 -0.4
2,086,193 + CA264_08930 0.14 +0.6
2,086,546 - CA264_08930 0.49 -0.2
2,086,546 - CA264_08930 0.49 +0.6
2,086,613 + CA264_08930 0.55 +0.8
2,086,614 - CA264_08930 0.55 -1.1
2,086,752 + CA264_08930 0.69 +0.2
2,087,035 - +0.1
2,087,074 + +0.4
2,087,074 + +0.2
2,087,084 + +1.0
2,087,105 - +0.2
2,087,160 + -0.2
2,087,305 - CA264_08935 0.16 +0.9
2,087,305 - CA264_08935 0.16 +1.3
2,087,324 + CA264_08935 0.18 -0.0
2,087,325 - CA264_08935 0.18 -0.2
2,087,415 + CA264_08935 0.29 -2.2
2,087,453 - CA264_08935 0.33 +0.5
2,087,614 - CA264_08935 0.52 +1.4
2,087,617 + CA264_08935 0.52 +0.8
2,087,618 - CA264_08935 0.52 +0.1
2,087,632 + CA264_08935 0.54 -0.5
2,087,635 - CA264_08935 0.54 -0.4
2,087,650 + CA264_08935 0.56 -0.8
2,087,650 + CA264_08935 0.56 +1.1
2,087,693 - CA264_08935 0.61 -0.2
2,087,693 - CA264_08935 0.61 -0.0
2,087,800 + CA264_08935 0.74 +0.5
2,087,801 - CA264_08935 0.74 -0.2
2,087,801 - CA264_08935 0.74 +1.1
2,087,801 - CA264_08935 0.74 +0.3
2,087,887 - CA264_08935 0.84 +0.8
2,087,930 - CA264_08935 0.89 +0.2
2,087,932 - CA264_08935 0.89 +0.2
2,087,932 - CA264_08935 0.89 +0.6
2,088,023 - +0.9
2,088,023 - +0.7
2,088,076 + +0.6
2,088,076 + +2.1
2,088,077 - +0.1
2,088,096 + +0.8
2,088,096 + +0.7
2,088,098 + +1.4
2,088,102 + +0.1
2,088,102 + +0.8
2,088,375 + CA264_08940 0.21 +0.5
2,088,376 - CA264_08940 0.21 +0.1
2,088,667 + CA264_08940 0.54 +0.8
2,088,698 - CA264_08940 0.58 -0.2
2,088,702 + CA264_08940 0.58 +1.0
2,088,897 + CA264_08940 0.80 +1.4
2,088,934 + CA264_08940 0.85 -0.7
2,089,014 + +0.5

Or see this region's nucleotide sequence