Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_08930 and CA264_08935 are separated by 100 nucleotides CA264_08935 and CA264_08940 are separated by 163 nucleotides
CA264_08930: CA264_08930 - hypothetical protein, at 2,086,048 to 2,087,070
_08930
CA264_08935: CA264_08935 - nuclease PIN, at 2,087,171 to 2,088,022
_08935
CA264_08940: CA264_08940 - cysteine synthase B, at 2,088,186 to 2,089,070
_08940
Position (kb)
2087
2088
2089 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2086.176 kb on - strand, within CA264_08930 at 2086.193 kb on + strand, within CA264_08930 at 2086.193 kb on + strand, within CA264_08930 at 2086.193 kb on + strand, within CA264_08930 at 2086.546 kb on - strand, within CA264_08930 at 2086.546 kb on - strand, within CA264_08930 at 2086.613 kb on + strand, within CA264_08930 at 2086.614 kb on - strand, within CA264_08930 at 2086.752 kb on + strand, within CA264_08930 at 2087.035 kb on - strand at 2087.074 kb on + strand at 2087.074 kb on + strand at 2087.084 kb on + strand at 2087.105 kb on - strand at 2087.160 kb on + strand at 2087.305 kb on - strand, within CA264_08935 at 2087.305 kb on - strand, within CA264_08935 at 2087.324 kb on + strand, within CA264_08935 at 2087.325 kb on - strand, within CA264_08935 at 2087.415 kb on + strand, within CA264_08935 at 2087.453 kb on - strand, within CA264_08935 at 2087.614 kb on - strand, within CA264_08935 at 2087.617 kb on + strand, within CA264_08935 at 2087.618 kb on - strand, within CA264_08935 at 2087.632 kb on + strand, within CA264_08935 at 2087.635 kb on - strand, within CA264_08935 at 2087.650 kb on + strand, within CA264_08935 at 2087.650 kb on + strand, within CA264_08935 at 2087.693 kb on - strand, within CA264_08935 at 2087.693 kb on - strand, within CA264_08935 at 2087.800 kb on + strand, within CA264_08935 at 2087.801 kb on - strand, within CA264_08935 at 2087.801 kb on - strand, within CA264_08935 at 2087.801 kb on - strand, within CA264_08935 at 2087.887 kb on - strand, within CA264_08935 at 2087.930 kb on - strand, within CA264_08935 at 2087.932 kb on - strand, within CA264_08935 at 2087.932 kb on - strand, within CA264_08935 at 2088.023 kb on - strand at 2088.023 kb on - strand at 2088.076 kb on + strand at 2088.076 kb on + strand at 2088.077 kb on - strand at 2088.096 kb on + strand at 2088.096 kb on + strand at 2088.098 kb on + strand at 2088.102 kb on + strand at 2088.102 kb on + strand at 2088.375 kb on + strand, within CA264_08940 at 2088.376 kb on - strand, within CA264_08940 at 2088.667 kb on + strand, within CA264_08940 at 2088.698 kb on - strand, within CA264_08940 at 2088.702 kb on + strand, within CA264_08940 at 2088.897 kb on + strand, within CA264_08940 at 2088.934 kb on + strand, within CA264_08940 at 2089.014 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 2,086,176 - CA264_08930 0.13 +0.1 2,086,193 + CA264_08930 0.14 +0.7 2,086,193 + CA264_08930 0.14 -0.4 2,086,193 + CA264_08930 0.14 +0.6 2,086,546 - CA264_08930 0.49 -0.2 2,086,546 - CA264_08930 0.49 +0.6 2,086,613 + CA264_08930 0.55 +0.8 2,086,614 - CA264_08930 0.55 -1.1 2,086,752 + CA264_08930 0.69 +0.2 2,087,035 - +0.1 2,087,074 + +0.4 2,087,074 + +0.2 2,087,084 + +1.0 2,087,105 - +0.2 2,087,160 + -0.2 2,087,305 - CA264_08935 0.16 +0.9 2,087,305 - CA264_08935 0.16 +1.3 2,087,324 + CA264_08935 0.18 -0.0 2,087,325 - CA264_08935 0.18 -0.2 2,087,415 + CA264_08935 0.29 -2.2 2,087,453 - CA264_08935 0.33 +0.5 2,087,614 - CA264_08935 0.52 +1.4 2,087,617 + CA264_08935 0.52 +0.8 2,087,618 - CA264_08935 0.52 +0.1 2,087,632 + CA264_08935 0.54 -0.5 2,087,635 - CA264_08935 0.54 -0.4 2,087,650 + CA264_08935 0.56 -0.8 2,087,650 + CA264_08935 0.56 +1.1 2,087,693 - CA264_08935 0.61 -0.2 2,087,693 - CA264_08935 0.61 -0.0 2,087,800 + CA264_08935 0.74 +0.5 2,087,801 - CA264_08935 0.74 -0.2 2,087,801 - CA264_08935 0.74 +1.1 2,087,801 - CA264_08935 0.74 +0.3 2,087,887 - CA264_08935 0.84 +0.8 2,087,930 - CA264_08935 0.89 +0.2 2,087,932 - CA264_08935 0.89 +0.2 2,087,932 - CA264_08935 0.89 +0.6 2,088,023 - +0.9 2,088,023 - +0.7 2,088,076 + +0.6 2,088,076 + +2.1 2,088,077 - +0.1 2,088,096 + +0.8 2,088,096 + +0.7 2,088,098 + +1.4 2,088,102 + +0.1 2,088,102 + +0.8 2,088,375 + CA264_08940 0.21 +0.5 2,088,376 - CA264_08940 0.21 +0.1 2,088,667 + CA264_08940 0.54 +0.8 2,088,698 - CA264_08940 0.58 -0.2 2,088,702 + CA264_08940 0.58 +1.0 2,088,897 + CA264_08940 0.80 +1.4 2,088,934 + CA264_08940 0.85 -0.7 2,089,014 + +0.5
Or see this region's nucleotide sequence