Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_07925 and CA264_07930 are separated by 97 nucleotides CA264_07930 and CA264_07935 are separated by 189 nucleotides
CA264_07925: CA264_07925 - hybrid sensor histidine kinase/response regulator, at 1,831,546 to 1,833,906
_07925
CA264_07930: CA264_07930 - signal recognition particle protein, at 1,834,004 to 1,835,338
_07930
CA264_07935: CA264_07935 - hypothetical protein, at 1,835,528 to 1,836,850
_07935
Position (kb)
1834
1835
1836 Strain fitness (log2 ratio)
-1
0
1
2 at 1833.204 kb on + strand, within CA264_07925 at 1833.204 kb on + strand, within CA264_07925 at 1833.204 kb on + strand, within CA264_07925 at 1833.205 kb on - strand, within CA264_07925 at 1833.205 kb on - strand, within CA264_07925 at 1833.205 kb on - strand, within CA264_07925 at 1833.205 kb on - strand, within CA264_07925 at 1833.206 kb on + strand, within CA264_07925 at 1833.207 kb on - strand, within CA264_07925 at 1833.207 kb on - strand, within CA264_07925 at 1833.207 kb on - strand, within CA264_07925 at 1833.208 kb on + strand, within CA264_07925 at 1833.208 kb on + strand, within CA264_07925 at 1833.208 kb on + strand, within CA264_07925 at 1833.208 kb on + strand, within CA264_07925 at 1833.209 kb on - strand, within CA264_07925 at 1833.209 kb on - strand, within CA264_07925 at 1833.209 kb on - strand, within CA264_07925 at 1833.209 kb on - strand, within CA264_07925 at 1833.210 kb on + strand, within CA264_07925 at 1833.211 kb on - strand, within CA264_07925 at 1833.211 kb on - strand, within CA264_07925 at 1833.211 kb on - strand, within CA264_07925 at 1833.337 kb on + strand, within CA264_07925 at 1833.460 kb on + strand, within CA264_07925 at 1833.464 kb on + strand, within CA264_07925 at 1833.464 kb on + strand, within CA264_07925 at 1833.487 kb on + strand, within CA264_07925 at 1833.522 kb on + strand, within CA264_07925 at 1833.564 kb on - strand, within CA264_07925 at 1833.564 kb on - strand, within CA264_07925 at 1833.692 kb on + strand at 1833.790 kb on - strand at 1833.830 kb on + strand at 1833.957 kb on + strand at 1833.957 kb on + strand at 1833.957 kb on + strand at 1833.986 kb on + strand at 1833.991 kb on + strand at 1833.992 kb on - strand at 1834.049 kb on - strand at 1835.355 kb on - strand at 1835.374 kb on - strand at 1835.388 kb on + strand at 1835.399 kb on - strand at 1835.405 kb on + strand at 1835.436 kb on + strand at 1835.437 kb on - strand at 1835.437 kb on - strand at 1835.466 kb on - strand at 1835.466 kb on - strand at 1835.488 kb on - strand at 1835.554 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 1,833,204 + CA264_07925 0.70 +0.4 1,833,204 + CA264_07925 0.70 -1.1 1,833,204 + CA264_07925 0.70 -0.1 1,833,205 - CA264_07925 0.70 -0.0 1,833,205 - CA264_07925 0.70 -0.6 1,833,205 - CA264_07925 0.70 +0.1 1,833,205 - CA264_07925 0.70 +0.3 1,833,206 + CA264_07925 0.70 -0.2 1,833,207 - CA264_07925 0.70 -0.2 1,833,207 - CA264_07925 0.70 +0.3 1,833,207 - CA264_07925 0.70 -1.1 1,833,208 + CA264_07925 0.70 +0.1 1,833,208 + CA264_07925 0.70 -0.6 1,833,208 + CA264_07925 0.70 -0.8 1,833,208 + CA264_07925 0.70 -0.5 1,833,209 - CA264_07925 0.70 +0.5 1,833,209 - CA264_07925 0.70 -0.3 1,833,209 - CA264_07925 0.70 -0.4 1,833,209 - CA264_07925 0.70 -0.7 1,833,210 + CA264_07925 0.70 -1.5 1,833,211 - CA264_07925 0.71 -0.8 1,833,211 - CA264_07925 0.71 -0.3 1,833,211 - CA264_07925 0.71 -0.6 1,833,337 + CA264_07925 0.76 +0.2 1,833,460 + CA264_07925 0.81 -0.7 1,833,464 + CA264_07925 0.81 -0.9 1,833,464 + CA264_07925 0.81 +1.2 1,833,487 + CA264_07925 0.82 -1.3 1,833,522 + CA264_07925 0.84 +0.1 1,833,564 - CA264_07925 0.85 -1.5 1,833,564 - CA264_07925 0.85 -1.0 1,833,692 + +0.5 1,833,790 - -1.3 1,833,830 + -0.5 1,833,957 + +0.2 1,833,957 + -0.3 1,833,957 + -0.5 1,833,986 + -0.8 1,833,991 + -0.2 1,833,992 - +0.6 1,834,049 - +1.5 1,835,355 - +1.3 1,835,374 - +1.5 1,835,388 + +1.2 1,835,399 - +2.0 1,835,405 + +1.0 1,835,436 + +1.6 1,835,437 - +1.5 1,835,437 - +1.5 1,835,466 - +0.8 1,835,466 - +0.3 1,835,488 - +1.2 1,835,554 - +0.5
Or see this region's nucleotide sequence