Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07895

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07885 and CA264_07890 are separated by 105 nucleotidesCA264_07890 and CA264_07895 overlap by 4 nucleotidesCA264_07895 and CA264_07900 are separated by 372 nucleotidesCA264_07900 and CA264_07905 are separated by 155 nucleotides CA264_07885: CA264_07885 - phenazine biosynthesis protein PhzF family protein, at 1,825,148 to 1,826,026 _07885 CA264_07890: CA264_07890 - hypothetical protein, at 1,826,132 to 1,826,725 _07890 CA264_07895: CA264_07895 - hypothetical protein, at 1,826,722 to 1,827,294 _07895 CA264_07900: CA264_07900 - hypothetical protein, at 1,827,667 to 1,828,047 _07900 CA264_07905: CA264_07905 - tRNA-specific adenosine deaminase, at 1,828,203 to 1,828,688 _07905 Position (kb) 1826 1827 1828Strain fitness (log2 ratio) -2 -1 0 1 2at 1825.796 kb on - strand, within CA264_07885at 1825.857 kb on - strand, within CA264_07885at 1826.001 kb on - strandat 1826.035 kb on + strandat 1826.036 kb on - strandat 1826.041 kb on + strandat 1826.042 kb on - strandat 1826.048 kb on + strandat 1826.048 kb on + strandat 1826.281 kb on - strand, within CA264_07890at 1826.391 kb on + strand, within CA264_07890at 1826.392 kb on - strand, within CA264_07890at 1826.399 kb on - strand, within CA264_07890at 1826.399 kb on - strand, within CA264_07890at 1826.399 kb on - strand, within CA264_07890at 1826.399 kb on - strand, within CA264_07890at 1826.564 kb on + strand, within CA264_07890at 1826.723 kb on + strandat 1826.728 kb on - strandat 1826.731 kb on - strandat 1826.851 kb on + strand, within CA264_07895at 1826.852 kb on - strand, within CA264_07895at 1826.852 kb on - strand, within CA264_07895at 1826.852 kb on - strand, within CA264_07895at 1826.919 kb on + strand, within CA264_07895at 1826.928 kb on + strand, within CA264_07895at 1826.930 kb on + strand, within CA264_07895at 1826.931 kb on - strand, within CA264_07895at 1826.931 kb on - strand, within CA264_07895at 1827.078 kb on - strand, within CA264_07895at 1827.141 kb on + strand, within CA264_07895at 1827.178 kb on - strand, within CA264_07895at 1827.187 kb on + strand, within CA264_07895at 1827.295 kb on + strandat 1827.295 kb on + strandat 1827.330 kb on + strandat 1827.331 kb on - strandat 1827.350 kb on + strandat 1827.363 kb on - strandat 1827.389 kb on - strandat 1827.422 kb on - strandat 1827.448 kb on - strandat 1827.480 kb on + strandat 1827.503 kb on + strandat 1827.513 kb on - strandat 1827.529 kb on - strandat 1827.546 kb on + strandat 1827.546 kb on + strandat 1827.547 kb on - strandat 1827.552 kb on + strandat 1827.553 kb on - strandat 1827.553 kb on - strandat 1827.557 kb on - strandat 1827.606 kb on - strandat 1827.647 kb on + strandat 1827.647 kb on + strandat 1827.647 kb on + strandat 1827.647 kb on + strandat 1827.648 kb on - strandat 1827.649 kb on + strandat 1827.650 kb on - strandat 1827.693 kb on - strandat 1827.693 kb on - strandat 1827.739 kb on - strand, within CA264_07900at 1827.772 kb on - strand, within CA264_07900at 1827.780 kb on + strand, within CA264_07900at 1827.780 kb on + strand, within CA264_07900at 1827.781 kb on - strand, within CA264_07900at 1827.781 kb on - strand, within CA264_07900at 1827.781 kb on - strand, within CA264_07900at 1827.781 kb on - strand, within CA264_07900at 1828.061 kb on - strandat 1828.128 kb on + strandat 1828.150 kb on + strandat 1828.155 kb on - strandat 1828.161 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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1,825,796 - CA264_07885 0.74 -0.6
1,825,857 - CA264_07885 0.81 -0.3
1,826,001 - +1.7
1,826,035 + -0.7
1,826,036 - -0.7
1,826,041 + +1.9
1,826,042 - +1.3
1,826,048 + -0.7
1,826,048 + -0.1
1,826,281 - CA264_07890 0.25 +0.0
1,826,391 + CA264_07890 0.44 -1.7
1,826,392 - CA264_07890 0.44 -0.1
1,826,399 - CA264_07890 0.45 -0.3
1,826,399 - CA264_07890 0.45 +0.5
1,826,399 - CA264_07890 0.45 +0.3
1,826,399 - CA264_07890 0.45 +1.5
1,826,564 + CA264_07890 0.73 +0.8
1,826,723 + -0.6
1,826,728 - +0.9
1,826,731 - -0.2
1,826,851 + CA264_07895 0.23 -1.8
1,826,852 - CA264_07895 0.23 +0.6
1,826,852 - CA264_07895 0.23 -0.2
1,826,852 - CA264_07895 0.23 +1.0
1,826,919 + CA264_07895 0.34 -0.3
1,826,928 + CA264_07895 0.36 -0.4
1,826,930 + CA264_07895 0.36 -0.3
1,826,931 - CA264_07895 0.36 +0.7
1,826,931 - CA264_07895 0.36 +0.2
1,827,078 - CA264_07895 0.62 +0.7
1,827,141 + CA264_07895 0.73 -0.5
1,827,178 - CA264_07895 0.80 +0.3
1,827,187 + CA264_07895 0.81 +0.7
1,827,295 + -0.6
1,827,295 + +0.2
1,827,330 + -0.9
1,827,331 - -0.3
1,827,350 + +0.4
1,827,363 - -1.0
1,827,389 - +0.1
1,827,422 - -0.5
1,827,448 - +0.5
1,827,480 + -0.3
1,827,503 + -0.1
1,827,513 - -0.4
1,827,529 - +1.3
1,827,546 + +0.2
1,827,546 + -0.1
1,827,547 - +0.0
1,827,552 + +0.9
1,827,553 - +0.0
1,827,553 - -0.1
1,827,557 - +0.1
1,827,606 - +1.9
1,827,647 + -0.5
1,827,647 + +0.5
1,827,647 + -0.3
1,827,647 + +0.2
1,827,648 - -0.4
1,827,649 + -0.1
1,827,650 - +0.1
1,827,693 - -0.2
1,827,693 - +0.5
1,827,739 - CA264_07900 0.19 +0.3
1,827,772 - CA264_07900 0.28 -0.2
1,827,780 + CA264_07900 0.30 -0.4
1,827,780 + CA264_07900 0.30 +0.7
1,827,781 - CA264_07900 0.30 -0.3
1,827,781 - CA264_07900 0.30 +0.1
1,827,781 - CA264_07900 0.30 +0.1
1,827,781 - CA264_07900 0.30 -0.3
1,828,061 - -0.2
1,828,128 + -0.1
1,828,150 + +1.8
1,828,155 - +1.3
1,828,161 + -0.2

Or see this region's nucleotide sequence