Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_07500 and CA264_07505 are separated by 342 nucleotides CA264_07505 and CA264_07510 are separated by 57 nucleotides CA264_07510 and CA264_07515 are separated by 234 nucleotides CA264_07515 and CA264_07520 are separated by 82 nucleotides
CA264_07500: CA264_07500 - T9SS C-terminal target domain-containing protein, at 1,735,831 to 1,738,479
_07500
CA264_07505: CA264_07505 - GNAT family N-acetyltransferase, at 1,738,822 to 1,739,307
_07505
CA264_07510: CA264_07510 - DUF5103 domain-containing protein, at 1,739,365 to 1,740,675
_07510
CA264_07515: CA264_07515 - hypothetical protein, at 1,740,910 to 1,741,359
_07515
CA264_07520: CA264_07520 - DNA-binding response regulator, at 1,741,442 to 1,742,179
_07520
Position (kb) 1739
1740
1741 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1738.378 kb on - strand at 1738.398 kb on - strand at 1738.398 kb on - strand at 1738.420 kb on + strand at 1738.421 kb on - strand at 1738.438 kb on - strand at 1738.467 kb on - strand at 1738.469 kb on + strand at 1738.469 kb on + strand at 1738.470 kb on - strand at 1738.470 kb on - strand at 1738.488 kb on - strand at 1738.532 kb on + strand at 1738.542 kb on + strand at 1738.542 kb on + strand at 1738.545 kb on + strand at 1738.548 kb on + strand at 1738.552 kb on + strand at 1738.638 kb on + strand at 1738.640 kb on + strand at 1738.641 kb on - strand at 1738.644 kb on + strand at 1738.645 kb on - strand at 1738.645 kb on - strand at 1738.676 kb on + strand at 1738.677 kb on - strand at 1738.733 kb on - strand at 1738.734 kb on + strand at 1738.734 kb on + strand at 1738.734 kb on + strand at 1738.810 kb on + strand at 1738.817 kb on - strand at 1738.824 kb on - strand at 1738.825 kb on + strand at 1738.825 kb on + strand at 1738.826 kb on - strand at 1738.830 kb on + strand at 1738.881 kb on + strand, within CA264_07505 at 1738.881 kb on + strand, within CA264_07505 at 1738.882 kb on - strand, within CA264_07505 at 1738.902 kb on - strand, within CA264_07505 at 1738.968 kb on + strand, within CA264_07505 at 1738.969 kb on - strand, within CA264_07505 at 1738.969 kb on - strand, within CA264_07505 at 1739.068 kb on + strand, within CA264_07505 at 1739.073 kb on + strand, within CA264_07505 at 1739.083 kb on + strand, within CA264_07505 at 1739.083 kb on + strand, within CA264_07505 at 1739.084 kb on - strand, within CA264_07505 at 1739.084 kb on - strand, within CA264_07505 at 1739.084 kb on - strand, within CA264_07505 at 1739.084 kb on - strand, within CA264_07505 at 1739.084 kb on - strand, within CA264_07505 at 1739.085 kb on + strand, within CA264_07505 at 1739.085 kb on + strand, within CA264_07505 at 1739.086 kb on - strand, within CA264_07505 at 1739.086 kb on - strand, within CA264_07505 at 1739.100 kb on + strand, within CA264_07505 at 1739.135 kb on - strand, within CA264_07505 at 1739.186 kb on + strand, within CA264_07505 at 1739.186 kb on + strand, within CA264_07505 at 1739.187 kb on - strand, within CA264_07505 at 1739.265 kb on + strand at 1739.293 kb on + strand at 1739.294 kb on - strand at 1739.361 kb on - strand at 1739.435 kb on + strand at 1739.436 kb on - strand at 1739.436 kb on - strand at 1739.450 kb on + strand at 1739.451 kb on - strand at 1739.486 kb on + strand at 1739.487 kb on - strand at 1739.491 kb on - strand at 1739.523 kb on + strand, within CA264_07510 at 1739.523 kb on + strand, within CA264_07510 at 1739.525 kb on + strand, within CA264_07510 at 1739.525 kb on + strand, within CA264_07510 at 1739.525 kb on + strand, within CA264_07510 at 1739.525 kb on + strand, within CA264_07510 at 1739.526 kb on - strand, within CA264_07510 at 1739.526 kb on - strand, within CA264_07510 at 1739.526 kb on - strand, within CA264_07510 at 1739.526 kb on - strand, within CA264_07510 at 1739.528 kb on + strand, within CA264_07510 at 1739.528 kb on + strand, within CA264_07510 at 1739.528 kb on + strand, within CA264_07510 at 1739.529 kb on - strand, within CA264_07510 at 1739.531 kb on + strand, within CA264_07510 at 1739.531 kb on + strand, within CA264_07510 at 1739.531 kb on + strand, within CA264_07510 at 1739.531 kb on + strand, within CA264_07510 at 1739.532 kb on - strand, within CA264_07510 at 1739.535 kb on + strand, within CA264_07510 at 1739.535 kb on + strand, within CA264_07510 at 1739.536 kb on - strand, within CA264_07510 at 1739.536 kb on - strand, within CA264_07510 at 1739.536 kb on - strand, within CA264_07510 at 1739.536 kb on - strand, within CA264_07510 at 1739.538 kb on - strand, within CA264_07510 at 1739.538 kb on - strand, within CA264_07510 at 1739.572 kb on + strand, within CA264_07510 at 1739.611 kb on + strand, within CA264_07510 at 1739.629 kb on - strand, within CA264_07510 at 1739.645 kb on + strand, within CA264_07510 at 1739.646 kb on - strand, within CA264_07510 at 1739.678 kb on - strand, within CA264_07510 at 1739.699 kb on + strand, within CA264_07510 at 1739.700 kb on - strand, within CA264_07510 at 1739.745 kb on + strand, within CA264_07510 at 1739.844 kb on + strand, within CA264_07510 at 1739.844 kb on + strand, within CA264_07510 at 1739.845 kb on - strand, within CA264_07510 at 1739.866 kb on - strand, within CA264_07510 at 1739.907 kb on - strand, within CA264_07510 at 1739.914 kb on - strand, within CA264_07510 at 1739.968 kb on + strand, within CA264_07510 at 1739.968 kb on + strand, within CA264_07510 at 1739.968 kb on + strand, within CA264_07510 at 1739.968 kb on + strand, within CA264_07510 at 1739.968 kb on + strand, within CA264_07510 at 1739.968 kb on + strand, within CA264_07510 at 1739.968 kb on + strand, within CA264_07510 at 1739.968 kb on + strand, within CA264_07510 at 1739.969 kb on - strand, within CA264_07510 at 1739.969 kb on - strand, within CA264_07510 at 1739.969 kb on - strand, within CA264_07510 at 1739.969 kb on - strand, within CA264_07510 at 1739.969 kb on - strand, within CA264_07510 at 1739.969 kb on - strand, within CA264_07510 at 1739.969 kb on - strand, within CA264_07510 at 1739.969 kb on - strand, within CA264_07510 at 1739.970 kb on + strand, within CA264_07510 at 1739.970 kb on + strand, within CA264_07510 at 1739.972 kb on + strand, within CA264_07510 at 1739.972 kb on + strand, within CA264_07510 at 1739.972 kb on + strand, within CA264_07510 at 1739.973 kb on - strand, within CA264_07510 at 1739.973 kb on - strand, within CA264_07510 at 1739.977 kb on - strand, within CA264_07510 at 1739.990 kb on + strand, within CA264_07510 at 1740.052 kb on + strand, within CA264_07510 at 1740.063 kb on - strand, within CA264_07510 at 1740.081 kb on + strand, within CA264_07510 at 1740.241 kb on + strand, within CA264_07510 at 1740.264 kb on - strand, within CA264_07510 at 1740.272 kb on + strand, within CA264_07510 at 1740.273 kb on - strand, within CA264_07510 at 1740.333 kb on - strand, within CA264_07510 at 1740.440 kb on - strand, within CA264_07510 at 1740.512 kb on + strand, within CA264_07510 at 1740.513 kb on - strand, within CA264_07510 at 1740.549 kb on - strand at 1740.568 kb on + strand at 1740.651 kb on - strand at 1740.651 kb on - strand at 1740.651 kb on - strand at 1740.654 kb on + strand at 1740.654 kb on + strand at 1740.654 kb on + strand at 1740.654 kb on + strand at 1740.655 kb on - strand at 1740.655 kb on - strand at 1740.655 kb on - strand at 1740.655 kb on - strand at 1740.656 kb on + strand at 1740.656 kb on + strand at 1740.656 kb on + strand at 1740.656 kb on + strand at 1740.656 kb on + strand at 1740.657 kb on - strand at 1740.657 kb on - strand at 1740.657 kb on - strand at 1740.657 kb on - strand at 1740.670 kb on + strand at 1740.680 kb on + strand at 1740.681 kb on - strand at 1740.730 kb on + strand at 1740.730 kb on + strand at 1740.731 kb on - strand at 1740.733 kb on - strand at 1740.733 kb on - strand at 1740.736 kb on + strand at 1740.795 kb on + strand at 1741.054 kb on + strand, within CA264_07515 at 1741.161 kb on - strand, within CA264_07515 at 1741.208 kb on + strand, within CA264_07515 at 1741.208 kb on + strand, within CA264_07515 at 1741.209 kb on - strand, within CA264_07515 at 1741.237 kb on - strand, within CA264_07515 at 1741.331 kb on - strand at 1741.335 kb on - strand at 1741.335 kb on - strand at 1741.351 kb on + strand at 1741.360 kb on - strand at 1741.365 kb on - strand at 1741.365 kb on - strand at 1741.393 kb on - strand at 1741.394 kb on + strand at 1741.394 kb on + strand at 1741.395 kb on - strand at 1741.398 kb on + strand at 1741.400 kb on + strand at 1741.401 kb on - strand at 1741.444 kb on - strand at 1741.529 kb on + strand, within CA264_07520 at 1741.530 kb on - strand, within CA264_07520 at 1741.530 kb on - strand, within CA264_07520 at 1741.567 kb on + strand, within CA264_07520
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 1,738,378 - +0.2 1,738,398 - +0.3 1,738,398 - +0.5 1,738,420 + -1.1 1,738,421 - +1.4 1,738,438 - +1.0 1,738,467 - +0.6 1,738,469 + +0.2 1,738,469 + +0.6 1,738,470 - +0.9 1,738,470 - -0.3 1,738,488 - -0.4 1,738,532 + -0.1 1,738,542 + -1.1 1,738,542 + -1.0 1,738,545 + +0.1 1,738,548 + -0.8 1,738,552 + -2.0 1,738,638 + +0.3 1,738,640 + -0.5 1,738,641 - +0.8 1,738,644 + +1.0 1,738,645 - +0.9 1,738,645 - +2.3 1,738,676 + -0.4 1,738,677 - +0.3 1,738,733 - +0.4 1,738,734 + -0.4 1,738,734 + -3.2 1,738,734 + -0.1 1,738,810 + -0.4 1,738,817 - +0.5 1,738,824 - +1.1 1,738,825 + +0.6 1,738,825 + -1.8 1,738,826 - +1.3 1,738,830 + -0.3 1,738,881 + CA264_07505 0.12 -1.4 1,738,881 + CA264_07505 0.12 -0.8 1,738,882 - CA264_07505 0.12 +0.4 1,738,902 - CA264_07505 0.16 +0.9 1,738,968 + CA264_07505 0.30 -0.5 1,738,969 - CA264_07505 0.30 -0.8 1,738,969 - CA264_07505 0.30 -0.2 1,739,068 + CA264_07505 0.51 -0.3 1,739,073 + CA264_07505 0.52 +1.0 1,739,083 + CA264_07505 0.54 -1.0 1,739,083 + CA264_07505 0.54 -0.6 1,739,084 - CA264_07505 0.54 +1.6 1,739,084 - CA264_07505 0.54 -0.4 1,739,084 - CA264_07505 0.54 +0.7 1,739,084 - CA264_07505 0.54 -1.5 1,739,084 - CA264_07505 0.54 +0.7 1,739,085 + CA264_07505 0.54 +1.4 1,739,085 + CA264_07505 0.54 +0.7 1,739,086 - CA264_07505 0.54 +0.5 1,739,086 - CA264_07505 0.54 +1.2 1,739,100 + CA264_07505 0.57 -1.3 1,739,135 - CA264_07505 0.64 -0.1 1,739,186 + CA264_07505 0.75 -0.6 1,739,186 + CA264_07505 0.75 +0.2 1,739,187 - CA264_07505 0.75 +0.6 1,739,265 + -0.8 1,739,293 + +1.3 1,739,294 - -0.1 1,739,361 - +0.1 1,739,435 + -0.6 1,739,436 - +1.4 1,739,436 - -0.3 1,739,450 + +0.5 1,739,451 - +0.2 1,739,486 + -0.9 1,739,487 - +0.9 1,739,491 - +0.2 1,739,523 + CA264_07510 0.12 -0.1 1,739,523 + CA264_07510 0.12 -0.4 1,739,525 + CA264_07510 0.12 -0.1 1,739,525 + CA264_07510 0.12 -0.9 1,739,525 + CA264_07510 0.12 -0.4 1,739,525 + CA264_07510 0.12 -0.3 1,739,526 - CA264_07510 0.12 +1.4 1,739,526 - CA264_07510 0.12 +0.0 1,739,526 - CA264_07510 0.12 +0.6 1,739,526 - CA264_07510 0.12 -0.6 1,739,528 + CA264_07510 0.12 -0.4 1,739,528 + CA264_07510 0.12 -0.5 1,739,528 + CA264_07510 0.12 -0.1 1,739,529 - CA264_07510 0.13 +0.3 1,739,531 + CA264_07510 0.13 +0.5 1,739,531 + CA264_07510 0.13 -0.6 1,739,531 + CA264_07510 0.13 +0.3 1,739,531 + CA264_07510 0.13 -0.8 1,739,532 - CA264_07510 0.13 +0.2 1,739,535 + CA264_07510 0.13 -0.2 1,739,535 + CA264_07510 0.13 -0.9 1,739,536 - CA264_07510 0.13 +0.9 1,739,536 - CA264_07510 0.13 +1.4 1,739,536 - CA264_07510 0.13 +0.9 1,739,536 - CA264_07510 0.13 +0.9 1,739,538 - CA264_07510 0.13 +0.4 1,739,538 - CA264_07510 0.13 -0.1 1,739,572 + CA264_07510 0.16 -0.1 1,739,611 + CA264_07510 0.19 -0.1 1,739,629 - CA264_07510 0.20 +0.1 1,739,645 + CA264_07510 0.21 -1.0 1,739,646 - CA264_07510 0.21 +1.1 1,739,678 - CA264_07510 0.24 +0.4 1,739,699 + CA264_07510 0.25 -1.4 1,739,700 - CA264_07510 0.26 -0.9 1,739,745 + CA264_07510 0.29 +1.1 1,739,844 + CA264_07510 0.37 -1.9 1,739,844 + CA264_07510 0.37 -0.6 1,739,845 - CA264_07510 0.37 +1.4 1,739,866 - CA264_07510 0.38 -0.1 1,739,907 - CA264_07510 0.41 +0.9 1,739,914 - CA264_07510 0.42 +1.1 1,739,968 + CA264_07510 0.46 -0.4 1,739,968 + CA264_07510 0.46 -0.3 1,739,968 + CA264_07510 0.46 +0.2 1,739,968 + CA264_07510 0.46 -0.0 1,739,968 + CA264_07510 0.46 -0.2 1,739,968 + CA264_07510 0.46 +0.1 1,739,968 + CA264_07510 0.46 +0.3 1,739,968 + CA264_07510 0.46 -0.1 1,739,969 - CA264_07510 0.46 -0.1 1,739,969 - CA264_07510 0.46 +0.3 1,739,969 - CA264_07510 0.46 -0.4 1,739,969 - CA264_07510 0.46 +0.7 1,739,969 - CA264_07510 0.46 +0.2 1,739,969 - CA264_07510 0.46 +0.7 1,739,969 - CA264_07510 0.46 +0.9 1,739,969 - CA264_07510 0.46 +0.6 1,739,970 + CA264_07510 0.46 -0.5 1,739,970 + CA264_07510 0.46 +1.4 1,739,972 + CA264_07510 0.46 +0.0 1,739,972 + CA264_07510 0.46 -3.2 1,739,972 + CA264_07510 0.46 -1.0 1,739,973 - CA264_07510 0.46 +0.1 1,739,973 - CA264_07510 0.46 +0.2 1,739,977 - CA264_07510 0.47 +0.6 1,739,990 + CA264_07510 0.48 -0.6 1,740,052 + CA264_07510 0.52 +0.2 1,740,063 - CA264_07510 0.53 -1.9 1,740,081 + CA264_07510 0.55 -0.9 1,740,241 + CA264_07510 0.67 -0.4 1,740,264 - CA264_07510 0.69 +0.5 1,740,272 + CA264_07510 0.69 -0.1 1,740,273 - CA264_07510 0.69 -1.2 1,740,333 - CA264_07510 0.74 +0.6 1,740,440 - CA264_07510 0.82 -0.4 1,740,512 + CA264_07510 0.87 -1.0 1,740,513 - CA264_07510 0.88 +1.2 1,740,549 - +0.4 1,740,568 + -0.5 1,740,651 - +0.7 1,740,651 - +0.3 1,740,651 - +0.1 1,740,654 + -1.3 1,740,654 + -1.1 1,740,654 + -0.1 1,740,654 + -0.8 1,740,655 - +0.6 1,740,655 - +0.2 1,740,655 - +0.2 1,740,655 - +0.3 1,740,656 + -0.8 1,740,656 + +0.2 1,740,656 + -0.8 1,740,656 + -1.0 1,740,656 + -2.4 1,740,657 - +1.1 1,740,657 - +0.1 1,740,657 - +0.2 1,740,657 - +0.3 1,740,670 + -0.8 1,740,680 + -1.0 1,740,681 - -1.5 1,740,730 + -0.6 1,740,730 + -0.3 1,740,731 - +0.3 1,740,733 - +0.1 1,740,733 - -0.1 1,740,736 + -0.6 1,740,795 + -1.4 1,741,054 + CA264_07515 0.32 -0.9 1,741,161 - CA264_07515 0.56 +0.5 1,741,208 + CA264_07515 0.66 -1.7 1,741,208 + CA264_07515 0.66 -0.6 1,741,209 - CA264_07515 0.66 +0.2 1,741,237 - CA264_07515 0.73 +1.4 1,741,331 - +0.0 1,741,335 - +2.0 1,741,335 - +0.2 1,741,351 + -0.6 1,741,360 - +0.0 1,741,365 - -0.2 1,741,365 - -1.7 1,741,393 - +0.4 1,741,394 + +0.3 1,741,394 + +0.1 1,741,395 - +0.6 1,741,398 + -0.7 1,741,400 + -0.4 1,741,401 - +1.4 1,741,444 - +0.3 1,741,529 + CA264_07520 0.12 +0.2 1,741,530 - CA264_07520 0.12 +0.5 1,741,530 - CA264_07520 0.12 -0.0 1,741,567 + CA264_07520 0.17 +0.0
Or see this region's nucleotide sequence