Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07260

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07255 and CA264_07260 are separated by 319 nucleotidesCA264_07260 and CA264_07265 are separated by 60 nucleotides CA264_07255: CA264_07255 - cytochrome c oxidase subunit III, at 1,674,962 to 1,675,588 _07255 CA264_07260: CA264_07260 - hypothetical protein, at 1,675,908 to 1,676,456 _07260 CA264_07265: CA264_07265 - patatin, at 1,676,517 to 1,678,847 _07265 Position (kb) 1675 1676 1677Strain fitness (log2 ratio) -2 -1 0 1 2at 1674.913 kb on + strandat 1674.913 kb on + strandat 1674.914 kb on - strandat 1674.914 kb on - strandat 1674.915 kb on + strandat 1674.946 kb on + strandat 1674.946 kb on + strandat 1674.947 kb on - strandat 1674.949 kb on - strandat 1674.958 kb on - strandat 1675.040 kb on + strand, within CA264_07255at 1675.075 kb on + strand, within CA264_07255at 1675.104 kb on + strand, within CA264_07255at 1675.104 kb on + strand, within CA264_07255at 1675.104 kb on + strand, within CA264_07255at 1675.104 kb on + strand, within CA264_07255at 1675.104 kb on + strand, within CA264_07255at 1675.105 kb on - strand, within CA264_07255at 1675.105 kb on - strand, within CA264_07255at 1675.178 kb on + strand, within CA264_07255at 1675.183 kb on - strand, within CA264_07255at 1675.188 kb on + strand, within CA264_07255at 1675.283 kb on + strand, within CA264_07255at 1675.283 kb on + strand, within CA264_07255at 1675.283 kb on + strand, within CA264_07255at 1675.332 kb on + strand, within CA264_07255at 1675.333 kb on - strand, within CA264_07255at 1675.333 kb on - strand, within CA264_07255at 1675.333 kb on - strand, within CA264_07255at 1675.358 kb on - strand, within CA264_07255at 1675.358 kb on - strand, within CA264_07255at 1675.358 kb on - strand, within CA264_07255at 1675.537 kb on + strandat 1675.537 kb on + strandat 1675.537 kb on + strandat 1675.562 kb on + strandat 1675.562 kb on + strandat 1675.661 kb on + strandat 1675.676 kb on + strandat 1675.677 kb on - strandat 1675.677 kb on - strandat 1675.682 kb on + strandat 1675.682 kb on + strandat 1675.683 kb on - strandat 1675.683 kb on - strandat 1675.691 kb on - strandat 1675.693 kb on - strandat 1675.693 kb on - strandat 1675.704 kb on - strandat 1675.762 kb on + strandat 1675.763 kb on - strandat 1675.763 kb on - strandat 1675.767 kb on - strandat 1675.799 kb on + strandat 1675.799 kb on + strandat 1675.800 kb on - strandat 1675.800 kb on - strandat 1675.801 kb on + strandat 1675.802 kb on - strandat 1675.802 kb on - strandat 1675.840 kb on - strandat 1675.849 kb on - strandat 1675.882 kb on + strandat 1675.883 kb on - strandat 1675.883 kb on - strandat 1675.883 kb on - strandat 1675.883 kb on - strandat 1675.888 kb on + strandat 1675.899 kb on + strandat 1675.899 kb on + strandat 1675.986 kb on - strand, within CA264_07260at 1675.987 kb on + strand, within CA264_07260at 1675.987 kb on + strand, within CA264_07260at 1675.987 kb on + strand, within CA264_07260at 1675.988 kb on - strand, within CA264_07260at 1675.992 kb on - strand, within CA264_07260at 1676.027 kb on + strand, within CA264_07260at 1676.121 kb on - strand, within CA264_07260at 1676.175 kb on + strand, within CA264_07260at 1676.176 kb on - strand, within CA264_07260at 1676.300 kb on + strand, within CA264_07260at 1676.322 kb on + strand, within CA264_07260at 1676.323 kb on - strand, within CA264_07260at 1676.377 kb on + strand, within CA264_07260at 1676.377 kb on + strand, within CA264_07260at 1676.377 kb on + strand, within CA264_07260at 1676.382 kb on + strand, within CA264_07260at 1676.437 kb on + strandat 1676.462 kb on - strandat 1676.467 kb on + strandat 1676.486 kb on + strandat 1676.511 kb on + strandat 1676.554 kb on + strandat 1676.555 kb on - strandat 1676.556 kb on + strandat 1676.557 kb on - strandat 1676.557 kb on - strandat 1676.560 kb on + strandat 1676.560 kb on + strandat 1676.560 kb on + strandat 1676.560 kb on + strandat 1676.560 kb on + strandat 1676.560 kb on + strandat 1676.560 kb on + strandat 1676.560 kb on + strandat 1676.560 kb on + strandat 1676.561 kb on - strandat 1676.561 kb on - strandat 1676.561 kb on - strandat 1676.561 kb on - strandat 1676.561 kb on - strandat 1676.561 kb on - strandat 1676.561 kb on - strandat 1676.612 kb on - strandat 1676.612 kb on - strandat 1676.685 kb on - strandat 1676.685 kb on - strandat 1676.700 kb on + strandat 1676.701 kb on - strandat 1676.833 kb on - strand, within CA264_07265at 1676.835 kb on - strand, within CA264_07265at 1676.838 kb on + strand, within CA264_07265at 1676.838 kb on + strand, within CA264_07265at 1676.838 kb on + strand, within CA264_07265at 1676.839 kb on - strand, within CA264_07265at 1676.844 kb on + strand, within CA264_07265at 1676.845 kb on - strand, within CA264_07265at 1676.892 kb on + strand, within CA264_07265at 1676.892 kb on + strand, within CA264_07265at 1676.893 kb on - strand, within CA264_07265at 1676.948 kb on + strand, within CA264_07265at 1676.998 kb on - strand, within CA264_07265at 1676.998 kb on - strand, within CA264_07265at 1676.999 kb on + strand, within CA264_07265at 1676.999 kb on + strand, within CA264_07265at 1677.000 kb on - strand, within CA264_07265at 1677.048 kb on + strand, within CA264_07265at 1677.048 kb on + strand, within CA264_07265at 1677.180 kb on - strand, within CA264_07265at 1677.264 kb on + strand, within CA264_07265at 1677.265 kb on - strand, within CA264_07265at 1677.270 kb on + strand, within CA264_07265at 1677.309 kb on + strand, within CA264_07265at 1677.310 kb on - strand, within CA264_07265at 1677.317 kb on - strand, within CA264_07265at 1677.357 kb on - strand, within CA264_07265at 1677.360 kb on + strand, within CA264_07265at 1677.360 kb on + strand, within CA264_07265at 1677.360 kb on + strand, within CA264_07265at 1677.360 kb on + strand, within CA264_07265at 1677.360 kb on + strand, within CA264_07265at 1677.360 kb on + strand, within CA264_07265at 1677.361 kb on - strand, within CA264_07265at 1677.361 kb on - strand, within CA264_07265at 1677.361 kb on - strand, within CA264_07265at 1677.361 kb on - strand, within CA264_07265at 1677.365 kb on - strand, within CA264_07265at 1677.365 kb on - strand, within CA264_07265at 1677.365 kb on - strand, within CA264_07265at 1677.401 kb on + strand, within CA264_07265at 1677.402 kb on - strand, within CA264_07265at 1677.411 kb on - strand, within CA264_07265at 1677.411 kb on - strand, within CA264_07265at 1677.411 kb on - strand, within CA264_07265at 1677.432 kb on + strand, within CA264_07265

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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1,674,913 + -2.0
1,674,913 + -0.1
1,674,914 - -2.0
1,674,914 - +0.7
1,674,915 + +0.9
1,674,946 + -0.8
1,674,946 + -0.8
1,674,947 - -0.0
1,674,949 - +0.2
1,674,958 - +0.4
1,675,040 + CA264_07255 0.12 +0.6
1,675,075 + CA264_07255 0.18 -0.0
1,675,104 + CA264_07255 0.23 +0.1
1,675,104 + CA264_07255 0.23 -0.5
1,675,104 + CA264_07255 0.23 +0.7
1,675,104 + CA264_07255 0.23 -1.2
1,675,104 + CA264_07255 0.23 -0.1
1,675,105 - CA264_07255 0.23 +0.2
1,675,105 - CA264_07255 0.23 -0.0
1,675,178 + CA264_07255 0.34 -0.4
1,675,183 - CA264_07255 0.35 +0.4
1,675,188 + CA264_07255 0.36 -1.9
1,675,283 + CA264_07255 0.51 -0.0
1,675,283 + CA264_07255 0.51 -0.3
1,675,283 + CA264_07255 0.51 -0.1
1,675,332 + CA264_07255 0.59 +0.1
1,675,333 - CA264_07255 0.59 -0.5
1,675,333 - CA264_07255 0.59 -0.5
1,675,333 - CA264_07255 0.59 -1.8
1,675,358 - CA264_07255 0.63 +1.1
1,675,358 - CA264_07255 0.63 -0.1
1,675,358 - CA264_07255 0.63 -0.7
1,675,537 + -1.6
1,675,537 + -1.6
1,675,537 + -0.5
1,675,562 + -1.4
1,675,562 + -0.6
1,675,661 + -1.0
1,675,676 + -0.5
1,675,677 - -0.0
1,675,677 - -0.5
1,675,682 + -0.6
1,675,682 + -0.8
1,675,683 - -0.3
1,675,683 - +0.3
1,675,691 - +0.7
1,675,693 - -0.1
1,675,693 - -0.2
1,675,704 - +0.0
1,675,762 + -0.2
1,675,763 - -0.4
1,675,763 - -0.4
1,675,767 - +0.1
1,675,799 + -0.5
1,675,799 + -1.6
1,675,800 - +1.0
1,675,800 - -0.4
1,675,801 + -1.4
1,675,802 - +2.5
1,675,802 - +0.6
1,675,840 - -0.6
1,675,849 - +0.4
1,675,882 + -2.5
1,675,883 - -0.1
1,675,883 - +0.0
1,675,883 - -0.7
1,675,883 - +0.0
1,675,888 + -0.3
1,675,899 + -1.3
1,675,899 + -0.2
1,675,986 - CA264_07260 0.14 +0.3
1,675,987 + CA264_07260 0.14 -1.6
1,675,987 + CA264_07260 0.14 +1.0
1,675,987 + CA264_07260 0.14 +0.4
1,675,988 - CA264_07260 0.15 -1.5
1,675,992 - CA264_07260 0.15 -1.0
1,676,027 + CA264_07260 0.22 +0.3
1,676,121 - CA264_07260 0.39 -0.4
1,676,175 + CA264_07260 0.49 -0.7
1,676,176 - CA264_07260 0.49 +1.0
1,676,300 + CA264_07260 0.71 -1.8
1,676,322 + CA264_07260 0.75 +0.3
1,676,323 - CA264_07260 0.76 -0.3
1,676,377 + CA264_07260 0.85 -1.8
1,676,377 + CA264_07260 0.85 -0.6
1,676,377 + CA264_07260 0.85 -0.4
1,676,382 + CA264_07260 0.86 -0.8
1,676,437 + +0.3
1,676,462 - +1.2
1,676,467 + -0.3
1,676,486 + +0.5
1,676,511 + -1.3
1,676,554 + -0.2
1,676,555 - -1.1
1,676,556 + +0.1
1,676,557 - +1.3
1,676,557 - +0.9
1,676,560 + -1.1
1,676,560 + +1.0
1,676,560 + -1.3
1,676,560 + +0.7
1,676,560 + -0.3
1,676,560 + -0.1
1,676,560 + +1.0
1,676,560 + +0.6
1,676,560 + +0.9
1,676,561 - +0.0
1,676,561 - +0.3
1,676,561 - +2.3
1,676,561 - -0.7
1,676,561 - -0.5
1,676,561 - +0.2
1,676,561 - +0.6
1,676,612 - -0.4
1,676,612 - -0.1
1,676,685 - +0.4
1,676,685 - +0.3
1,676,700 + -0.3
1,676,701 - -0.2
1,676,833 - CA264_07265 0.14 -0.2
1,676,835 - CA264_07265 0.14 +0.2
1,676,838 + CA264_07265 0.14 +0.0
1,676,838 + CA264_07265 0.14 -1.1
1,676,838 + CA264_07265 0.14 -0.8
1,676,839 - CA264_07265 0.14 -1.0
1,676,844 + CA264_07265 0.14 -1.6
1,676,845 - CA264_07265 0.14 +0.6
1,676,892 + CA264_07265 0.16 +0.5
1,676,892 + CA264_07265 0.16 -1.7
1,676,893 - CA264_07265 0.16 +0.0
1,676,948 + CA264_07265 0.18 -0.6
1,676,998 - CA264_07265 0.21 +0.7
1,676,998 - CA264_07265 0.21 -0.2
1,676,999 + CA264_07265 0.21 -0.6
1,676,999 + CA264_07265 0.21 -0.9
1,677,000 - CA264_07265 0.21 -0.8
1,677,048 + CA264_07265 0.23 -1.1
1,677,048 + CA264_07265 0.23 +0.0
1,677,180 - CA264_07265 0.28 +0.1
1,677,264 + CA264_07265 0.32 -0.9
1,677,265 - CA264_07265 0.32 -1.5
1,677,270 + CA264_07265 0.32 -0.4
1,677,309 + CA264_07265 0.34 -0.4
1,677,310 - CA264_07265 0.34 -0.4
1,677,317 - CA264_07265 0.34 +0.6
1,677,357 - CA264_07265 0.36 +0.5
1,677,360 + CA264_07265 0.36 +0.8
1,677,360 + CA264_07265 0.36 -0.5
1,677,360 + CA264_07265 0.36 -0.8
1,677,360 + CA264_07265 0.36 -0.1
1,677,360 + CA264_07265 0.36 +0.3
1,677,360 + CA264_07265 0.36 -1.0
1,677,361 - CA264_07265 0.36 -0.7
1,677,361 - CA264_07265 0.36 +1.0
1,677,361 - CA264_07265 0.36 -0.8
1,677,361 - CA264_07265 0.36 +0.1
1,677,365 - CA264_07265 0.36 -0.2
1,677,365 - CA264_07265 0.36 -1.3
1,677,365 - CA264_07265 0.36 -0.7
1,677,401 + CA264_07265 0.38 +1.0
1,677,402 - CA264_07265 0.38 -0.0
1,677,411 - CA264_07265 0.38 -0.1
1,677,411 - CA264_07265 0.38 +0.2
1,677,411 - CA264_07265 0.38 +0.0
1,677,432 + CA264_07265 0.39 +0.1

Or see this region's nucleotide sequence