Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06025

Experiment: m.b. A22 0.04 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_06015 and CA264_06020 are separated by 121 nucleotidesCA264_06020 and CA264_06025 are separated by 103 nucleotidesCA264_06025 and CA264_06030 are separated by 157 nucleotides CA264_06015: CA264_06015 - hypothetical protein, at 1,404,495 to 1,405,223 _06015 CA264_06020: CA264_06020 - hypothetical protein, at 1,405,345 to 1,406,073 _06020 CA264_06025: CA264_06025 - cysteine methyltransferase, at 1,406,177 to 1,407,049 _06025 CA264_06030: CA264_06030 - cell envelope biogenesis protein OmpA, at 1,407,207 to 1,408,085 _06030 Position (kb) 1406 1407 1408Strain fitness (log2 ratio) -2 -1 0 1 2at 1405.201 kb on - strandat 1405.222 kb on - strandat 1405.235 kb on + strandat 1405.236 kb on - strandat 1405.324 kb on - strandat 1405.324 kb on - strandat 1405.324 kb on - strandat 1405.345 kb on - strandat 1405.345 kb on - strandat 1405.359 kb on + strandat 1405.365 kb on + strandat 1405.367 kb on + strandat 1405.368 kb on - strandat 1405.368 kb on - strandat 1405.368 kb on - strandat 1405.542 kb on + strand, within CA264_06020at 1405.542 kb on + strand, within CA264_06020at 1405.543 kb on - strand, within CA264_06020at 1405.551 kb on + strand, within CA264_06020at 1405.786 kb on + strand, within CA264_06020at 1405.836 kb on + strand, within CA264_06020at 1405.836 kb on + strand, within CA264_06020at 1405.836 kb on + strand, within CA264_06020at 1405.839 kb on + strand, within CA264_06020at 1405.839 kb on + strand, within CA264_06020at 1405.840 kb on - strand, within CA264_06020at 1405.870 kb on + strand, within CA264_06020at 1405.870 kb on + strand, within CA264_06020at 1405.871 kb on - strand, within CA264_06020at 1405.933 kb on + strand, within CA264_06020at 1405.981 kb on + strand, within CA264_06020at 1405.982 kb on - strand, within CA264_06020at 1405.982 kb on - strand, within CA264_06020at 1405.982 kb on - strand, within CA264_06020at 1405.983 kb on + strand, within CA264_06020at 1405.983 kb on + strand, within CA264_06020at 1405.984 kb on - strand, within CA264_06020at 1405.984 kb on - strand, within CA264_06020at 1406.146 kb on + strandat 1406.147 kb on - strandat 1406.176 kb on + strandat 1406.176 kb on + strandat 1406.177 kb on - strandat 1406.213 kb on + strandat 1406.214 kb on - strandat 1406.342 kb on + strand, within CA264_06025at 1406.342 kb on + strand, within CA264_06025at 1406.513 kb on + strand, within CA264_06025at 1406.513 kb on + strand, within CA264_06025at 1406.514 kb on - strand, within CA264_06025at 1406.514 kb on - strand, within CA264_06025at 1406.515 kb on + strand, within CA264_06025at 1406.515 kb on + strand, within CA264_06025at 1406.515 kb on + strand, within CA264_06025at 1406.516 kb on - strand, within CA264_06025at 1406.543 kb on + strand, within CA264_06025at 1406.543 kb on + strand, within CA264_06025at 1406.543 kb on + strand, within CA264_06025at 1406.544 kb on - strand, within CA264_06025at 1406.544 kb on - strand, within CA264_06025at 1406.619 kb on + strand, within CA264_06025at 1406.783 kb on - strand, within CA264_06025at 1406.807 kb on + strand, within CA264_06025at 1406.808 kb on - strand, within CA264_06025at 1406.911 kb on + strand, within CA264_06025at 1406.914 kb on - strand, within CA264_06025at 1407.047 kb on + strandat 1407.054 kb on + strandat 1407.055 kb on - strandat 1407.055 kb on - strandat 1407.091 kb on + strandat 1407.113 kb on - strandat 1407.117 kb on - strandat 1407.200 kb on + strandat 1407.201 kb on - strandat 1407.206 kb on + strandat 1407.206 kb on + strandat 1407.207 kb on - strandat 1407.224 kb on - strandat 1407.291 kb on + strandat 1407.291 kb on + strandat 1407.353 kb on + strand, within CA264_06030at 1407.353 kb on + strand, within CA264_06030at 1407.354 kb on - strand, within CA264_06030at 1407.691 kb on + strand, within CA264_06030at 1407.691 kb on + strand, within CA264_06030at 1407.691 kb on + strand, within CA264_06030at 1407.692 kb on - strand, within CA264_06030at 1407.693 kb on + strand, within CA264_06030at 1407.693 kb on + strand, within CA264_06030at 1407.694 kb on - strand, within CA264_06030at 1407.694 kb on - strand, within CA264_06030at 1407.935 kb on - strand, within CA264_06030at 1407.972 kb on + strand, within CA264_06030at 1407.972 kb on + strand, within CA264_06030

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
remove
1,405,201 - -1.4
1,405,222 - -0.7
1,405,235 + +0.5
1,405,236 - +0.6
1,405,324 - +0.5
1,405,324 - +1.5
1,405,324 - +0.8
1,405,345 - -1.0
1,405,345 - -0.7
1,405,359 + +1.4
1,405,365 + -1.3
1,405,367 + +1.5
1,405,368 - -0.9
1,405,368 - -0.4
1,405,368 - -1.2
1,405,542 + CA264_06020 0.27 -0.1
1,405,542 + CA264_06020 0.27 -1.3
1,405,543 - CA264_06020 0.27 +0.8
1,405,551 + CA264_06020 0.28 +0.3
1,405,786 + CA264_06020 0.60 +1.1
1,405,836 + CA264_06020 0.67 -0.5
1,405,836 + CA264_06020 0.67 +0.8
1,405,836 + CA264_06020 0.67 -0.3
1,405,839 + CA264_06020 0.68 +0.3
1,405,839 + CA264_06020 0.68 -0.4
1,405,840 - CA264_06020 0.68 -0.9
1,405,870 + CA264_06020 0.72 +0.7
1,405,870 + CA264_06020 0.72 -0.0
1,405,871 - CA264_06020 0.72 +0.1
1,405,933 + CA264_06020 0.81 +0.4
1,405,981 + CA264_06020 0.87 +0.1
1,405,982 - CA264_06020 0.87 -0.3
1,405,982 - CA264_06020 0.87 +1.4
1,405,982 - CA264_06020 0.87 -0.5
1,405,983 + CA264_06020 0.88 -1.3
1,405,983 + CA264_06020 0.88 -0.2
1,405,984 - CA264_06020 0.88 -0.7
1,405,984 - CA264_06020 0.88 -0.8
1,406,146 + +1.5
1,406,147 - -0.9
1,406,176 + -0.0
1,406,176 + +2.2
1,406,177 - -0.9
1,406,213 + +0.7
1,406,214 - +0.7
1,406,342 + CA264_06025 0.19 +0.5
1,406,342 + CA264_06025 0.19 -1.1
1,406,513 + CA264_06025 0.38 -0.3
1,406,513 + CA264_06025 0.38 -0.5
1,406,514 - CA264_06025 0.39 -0.2
1,406,514 - CA264_06025 0.39 +1.3
1,406,515 + CA264_06025 0.39 +0.5
1,406,515 + CA264_06025 0.39 +2.5
1,406,515 + CA264_06025 0.39 +0.6
1,406,516 - CA264_06025 0.39 -0.3
1,406,543 + CA264_06025 0.42 +0.5
1,406,543 + CA264_06025 0.42 -1.4
1,406,543 + CA264_06025 0.42 +1.9
1,406,544 - CA264_06025 0.42 -0.7
1,406,544 - CA264_06025 0.42 -0.5
1,406,619 + CA264_06025 0.51 +0.2
1,406,783 - CA264_06025 0.69 +0.2
1,406,807 + CA264_06025 0.72 -1.8
1,406,808 - CA264_06025 0.72 +0.3
1,406,911 + CA264_06025 0.84 -0.2
1,406,914 - CA264_06025 0.84 -0.2
1,407,047 + -0.4
1,407,054 + -0.2
1,407,055 - -0.6
1,407,055 - -1.7
1,407,091 + +1.0
1,407,113 - +0.3
1,407,117 - -0.3
1,407,200 + +0.4
1,407,201 - -0.1
1,407,206 + +0.2
1,407,206 + +1.3
1,407,207 - +0.3
1,407,224 - +0.9
1,407,291 + +0.5
1,407,291 + +1.7
1,407,353 + CA264_06030 0.17 +1.6
1,407,353 + CA264_06030 0.17 +0.8
1,407,354 - CA264_06030 0.17 +0.8
1,407,691 + CA264_06030 0.55 +0.4
1,407,691 + CA264_06030 0.55 +0.1
1,407,691 + CA264_06030 0.55 +1.1
1,407,692 - CA264_06030 0.55 -0.8
1,407,693 + CA264_06030 0.55 +1.6
1,407,693 + CA264_06030 0.55 +0.5
1,407,694 - CA264_06030 0.55 +0.9
1,407,694 - CA264_06030 0.55 -1.4
1,407,935 - CA264_06030 0.83 -0.4
1,407,972 + CA264_06030 0.87 +0.6
1,407,972 + CA264_06030 0.87 -0.9

Or see this region's nucleotide sequence