Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_06015 and CA264_06020 are separated by 121 nucleotides CA264_06020 and CA264_06025 are separated by 103 nucleotides CA264_06025 and CA264_06030 are separated by 157 nucleotides
CA264_06015: CA264_06015 - hypothetical protein, at 1,404,495 to 1,405,223
_06015
CA264_06020: CA264_06020 - hypothetical protein, at 1,405,345 to 1,406,073
_06020
CA264_06025: CA264_06025 - cysteine methyltransferase, at 1,406,177 to 1,407,049
_06025
CA264_06030: CA264_06030 - cell envelope biogenesis protein OmpA, at 1,407,207 to 1,408,085
_06030
Position (kb)
1406
1407
1408 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1405.201 kb on - strand at 1405.222 kb on - strand at 1405.235 kb on + strand at 1405.236 kb on - strand at 1405.324 kb on - strand at 1405.324 kb on - strand at 1405.324 kb on - strand at 1405.345 kb on - strand at 1405.345 kb on - strand at 1405.359 kb on + strand at 1405.365 kb on + strand at 1405.367 kb on + strand at 1405.368 kb on - strand at 1405.368 kb on - strand at 1405.368 kb on - strand at 1405.542 kb on + strand, within CA264_06020 at 1405.542 kb on + strand, within CA264_06020 at 1405.543 kb on - strand, within CA264_06020 at 1405.551 kb on + strand, within CA264_06020 at 1405.786 kb on + strand, within CA264_06020 at 1405.836 kb on + strand, within CA264_06020 at 1405.836 kb on + strand, within CA264_06020 at 1405.836 kb on + strand, within CA264_06020 at 1405.839 kb on + strand, within CA264_06020 at 1405.839 kb on + strand, within CA264_06020 at 1405.840 kb on - strand, within CA264_06020 at 1405.870 kb on + strand, within CA264_06020 at 1405.870 kb on + strand, within CA264_06020 at 1405.871 kb on - strand, within CA264_06020 at 1405.933 kb on + strand, within CA264_06020 at 1405.981 kb on + strand, within CA264_06020 at 1405.982 kb on - strand, within CA264_06020 at 1405.982 kb on - strand, within CA264_06020 at 1405.982 kb on - strand, within CA264_06020 at 1405.983 kb on + strand, within CA264_06020 at 1405.983 kb on + strand, within CA264_06020 at 1405.984 kb on - strand, within CA264_06020 at 1405.984 kb on - strand, within CA264_06020 at 1406.146 kb on + strand at 1406.147 kb on - strand at 1406.176 kb on + strand at 1406.176 kb on + strand at 1406.177 kb on - strand at 1406.213 kb on + strand at 1406.214 kb on - strand at 1406.342 kb on + strand, within CA264_06025 at 1406.342 kb on + strand, within CA264_06025 at 1406.513 kb on + strand, within CA264_06025 at 1406.513 kb on + strand, within CA264_06025 at 1406.514 kb on - strand, within CA264_06025 at 1406.514 kb on - strand, within CA264_06025 at 1406.515 kb on + strand, within CA264_06025 at 1406.515 kb on + strand, within CA264_06025 at 1406.515 kb on + strand, within CA264_06025 at 1406.516 kb on - strand, within CA264_06025 at 1406.543 kb on + strand, within CA264_06025 at 1406.543 kb on + strand, within CA264_06025 at 1406.543 kb on + strand, within CA264_06025 at 1406.544 kb on - strand, within CA264_06025 at 1406.544 kb on - strand, within CA264_06025 at 1406.619 kb on + strand, within CA264_06025 at 1406.783 kb on - strand, within CA264_06025 at 1406.807 kb on + strand, within CA264_06025 at 1406.808 kb on - strand, within CA264_06025 at 1406.911 kb on + strand, within CA264_06025 at 1406.914 kb on - strand, within CA264_06025 at 1407.047 kb on + strand at 1407.054 kb on + strand at 1407.055 kb on - strand at 1407.055 kb on - strand at 1407.091 kb on + strand at 1407.113 kb on - strand at 1407.117 kb on - strand at 1407.200 kb on + strand at 1407.201 kb on - strand at 1407.206 kb on + strand at 1407.206 kb on + strand at 1407.207 kb on - strand at 1407.224 kb on - strand at 1407.291 kb on + strand at 1407.291 kb on + strand at 1407.353 kb on + strand, within CA264_06030 at 1407.353 kb on + strand, within CA264_06030 at 1407.354 kb on - strand, within CA264_06030 at 1407.691 kb on + strand, within CA264_06030 at 1407.691 kb on + strand, within CA264_06030 at 1407.691 kb on + strand, within CA264_06030 at 1407.692 kb on - strand, within CA264_06030 at 1407.693 kb on + strand, within CA264_06030 at 1407.693 kb on + strand, within CA264_06030 at 1407.694 kb on - strand, within CA264_06030 at 1407.694 kb on - strand, within CA264_06030 at 1407.935 kb on - strand, within CA264_06030 at 1407.972 kb on + strand, within CA264_06030 at 1407.972 kb on + strand, within CA264_06030
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 1,405,201 - -1.4 1,405,222 - -0.7 1,405,235 + +0.5 1,405,236 - +0.6 1,405,324 - +0.5 1,405,324 - +1.5 1,405,324 - +0.8 1,405,345 - -1.0 1,405,345 - -0.7 1,405,359 + +1.4 1,405,365 + -1.3 1,405,367 + +1.5 1,405,368 - -0.9 1,405,368 - -0.4 1,405,368 - -1.2 1,405,542 + CA264_06020 0.27 -0.1 1,405,542 + CA264_06020 0.27 -1.3 1,405,543 - CA264_06020 0.27 +0.8 1,405,551 + CA264_06020 0.28 +0.3 1,405,786 + CA264_06020 0.60 +1.1 1,405,836 + CA264_06020 0.67 -0.5 1,405,836 + CA264_06020 0.67 +0.8 1,405,836 + CA264_06020 0.67 -0.3 1,405,839 + CA264_06020 0.68 +0.3 1,405,839 + CA264_06020 0.68 -0.4 1,405,840 - CA264_06020 0.68 -0.9 1,405,870 + CA264_06020 0.72 +0.7 1,405,870 + CA264_06020 0.72 -0.0 1,405,871 - CA264_06020 0.72 +0.1 1,405,933 + CA264_06020 0.81 +0.4 1,405,981 + CA264_06020 0.87 +0.1 1,405,982 - CA264_06020 0.87 -0.3 1,405,982 - CA264_06020 0.87 +1.4 1,405,982 - CA264_06020 0.87 -0.5 1,405,983 + CA264_06020 0.88 -1.3 1,405,983 + CA264_06020 0.88 -0.2 1,405,984 - CA264_06020 0.88 -0.7 1,405,984 - CA264_06020 0.88 -0.8 1,406,146 + +1.5 1,406,147 - -0.9 1,406,176 + -0.0 1,406,176 + +2.2 1,406,177 - -0.9 1,406,213 + +0.7 1,406,214 - +0.7 1,406,342 + CA264_06025 0.19 +0.5 1,406,342 + CA264_06025 0.19 -1.1 1,406,513 + CA264_06025 0.38 -0.3 1,406,513 + CA264_06025 0.38 -0.5 1,406,514 - CA264_06025 0.39 -0.2 1,406,514 - CA264_06025 0.39 +1.3 1,406,515 + CA264_06025 0.39 +0.5 1,406,515 + CA264_06025 0.39 +2.5 1,406,515 + CA264_06025 0.39 +0.6 1,406,516 - CA264_06025 0.39 -0.3 1,406,543 + CA264_06025 0.42 +0.5 1,406,543 + CA264_06025 0.42 -1.4 1,406,543 + CA264_06025 0.42 +1.9 1,406,544 - CA264_06025 0.42 -0.7 1,406,544 - CA264_06025 0.42 -0.5 1,406,619 + CA264_06025 0.51 +0.2 1,406,783 - CA264_06025 0.69 +0.2 1,406,807 + CA264_06025 0.72 -1.8 1,406,808 - CA264_06025 0.72 +0.3 1,406,911 + CA264_06025 0.84 -0.2 1,406,914 - CA264_06025 0.84 -0.2 1,407,047 + -0.4 1,407,054 + -0.2 1,407,055 - -0.6 1,407,055 - -1.7 1,407,091 + +1.0 1,407,113 - +0.3 1,407,117 - -0.3 1,407,200 + +0.4 1,407,201 - -0.1 1,407,206 + +0.2 1,407,206 + +1.3 1,407,207 - +0.3 1,407,224 - +0.9 1,407,291 + +0.5 1,407,291 + +1.7 1,407,353 + CA264_06030 0.17 +1.6 1,407,353 + CA264_06030 0.17 +0.8 1,407,354 - CA264_06030 0.17 +0.8 1,407,691 + CA264_06030 0.55 +0.4 1,407,691 + CA264_06030 0.55 +0.1 1,407,691 + CA264_06030 0.55 +1.1 1,407,692 - CA264_06030 0.55 -0.8 1,407,693 + CA264_06030 0.55 +1.6 1,407,693 + CA264_06030 0.55 +0.5 1,407,694 - CA264_06030 0.55 +0.9 1,407,694 - CA264_06030 0.55 -1.4 1,407,935 - CA264_06030 0.83 -0.4 1,407,972 + CA264_06030 0.87 +0.6 1,407,972 + CA264_06030 0.87 -0.9
Or see this region's nucleotide sequence