Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05180

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05170 and CA264_05175 are separated by 78 nucleotidesCA264_05175 and CA264_05180 are separated by 171 nucleotidesCA264_05180 and CA264_05185 are separated by 133 nucleotides CA264_05170: CA264_05170 - phosphohydrolase, at 1,200,881 to 1,201,534 _05170 CA264_05175: CA264_05175 - hypothetical protein, at 1,201,613 to 1,202,074 _05175 CA264_05180: CA264_05180 - hypothetical protein, at 1,202,246 to 1,203,079 _05180 CA264_05185: CA264_05185 - hypothetical protein, at 1,203,213 to 1,203,992 _05185 Position (kb) 1202 1203 1204Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1201.385 kb on + strand, within CA264_05170at 1201.386 kb on - strand, within CA264_05170at 1201.386 kb on - strand, within CA264_05170at 1201.386 kb on - strand, within CA264_05170at 1201.389 kb on + strand, within CA264_05170at 1201.389 kb on + strand, within CA264_05170at 1201.389 kb on + strand, within CA264_05170at 1201.389 kb on + strand, within CA264_05170at 1201.390 kb on - strand, within CA264_05170at 1201.390 kb on - strand, within CA264_05170at 1201.390 kb on - strand, within CA264_05170at 1201.390 kb on - strand, within CA264_05170at 1201.390 kb on - strand, within CA264_05170at 1201.393 kb on + strand, within CA264_05170at 1201.485 kb on - strandat 1201.493 kb on + strandat 1201.494 kb on - strandat 1201.497 kb on + strandat 1201.553 kb on + strandat 1201.615 kb on - strandat 1201.616 kb on + strandat 1201.698 kb on + strand, within CA264_05175at 1201.698 kb on + strand, within CA264_05175at 1201.704 kb on - strand, within CA264_05175at 1201.704 kb on - strand, within CA264_05175at 1201.779 kb on - strand, within CA264_05175at 1201.913 kb on - strand, within CA264_05175at 1202.002 kb on - strand, within CA264_05175at 1202.002 kb on - strand, within CA264_05175at 1202.089 kb on - strandat 1202.091 kb on + strandat 1202.092 kb on - strandat 1202.092 kb on - strandat 1202.094 kb on + strandat 1202.168 kb on + strandat 1202.169 kb on - strandat 1202.172 kb on - strandat 1202.173 kb on + strandat 1202.173 kb on + strandat 1202.174 kb on - strandat 1202.227 kb on - strandat 1202.245 kb on + strandat 1202.245 kb on + strandat 1202.246 kb on - strandat 1202.246 kb on - strandat 1202.262 kb on - strandat 1202.293 kb on - strandat 1202.372 kb on + strand, within CA264_05180at 1202.372 kb on + strand, within CA264_05180at 1202.373 kb on - strand, within CA264_05180at 1202.444 kb on + strand, within CA264_05180at 1202.470 kb on + strand, within CA264_05180at 1202.470 kb on + strand, within CA264_05180at 1202.478 kb on - strand, within CA264_05180at 1202.498 kb on + strand, within CA264_05180at 1202.498 kb on + strand, within CA264_05180at 1202.499 kb on - strand, within CA264_05180at 1202.499 kb on - strand, within CA264_05180at 1202.499 kb on - strand, within CA264_05180at 1202.518 kb on + strand, within CA264_05180at 1202.518 kb on + strand, within CA264_05180at 1202.519 kb on - strand, within CA264_05180at 1202.519 kb on - strand, within CA264_05180at 1202.519 kb on - strand, within CA264_05180at 1202.519 kb on - strand, within CA264_05180at 1202.519 kb on - strand, within CA264_05180at 1202.522 kb on + strand, within CA264_05180at 1202.522 kb on + strand, within CA264_05180at 1202.523 kb on - strand, within CA264_05180at 1202.532 kb on + strand, within CA264_05180at 1202.580 kb on - strand, within CA264_05180at 1202.625 kb on - strand, within CA264_05180at 1202.735 kb on + strand, within CA264_05180at 1202.865 kb on + strand, within CA264_05180at 1202.883 kb on + strand, within CA264_05180at 1202.883 kb on + strand, within CA264_05180at 1202.883 kb on + strand, within CA264_05180at 1202.883 kb on + strand, within CA264_05180at 1202.884 kb on - strand, within CA264_05180at 1202.884 kb on - strand, within CA264_05180at 1202.884 kb on - strand, within CA264_05180at 1202.884 kb on - strand, within CA264_05180at 1202.885 kb on + strand, within CA264_05180at 1202.886 kb on - strand, within CA264_05180at 1202.886 kb on - strand, within CA264_05180at 1202.913 kb on + strand, within CA264_05180at 1202.913 kb on + strand, within CA264_05180at 1202.914 kb on - strand, within CA264_05180at 1202.914 kb on - strand, within CA264_05180at 1202.914 kb on - strand, within CA264_05180at 1202.914 kb on - strand, within CA264_05180at 1202.914 kb on - strand, within CA264_05180at 1202.914 kb on - strand, within CA264_05180at 1202.995 kb on + strand, within CA264_05180at 1203.006 kb on - strandat 1203.053 kb on - strandat 1203.094 kb on + strandat 1203.095 kb on - strandat 1203.116 kb on - strandat 1203.117 kb on + strandat 1203.117 kb on + strandat 1203.118 kb on - strandat 1203.118 kb on - strandat 1203.197 kb on + strandat 1203.242 kb on - strandat 1203.292 kb on + strand, within CA264_05185at 1203.292 kb on + strand, within CA264_05185at 1203.344 kb on - strand, within CA264_05185at 1203.375 kb on + strand, within CA264_05185at 1203.436 kb on - strand, within CA264_05185at 1203.487 kb on + strand, within CA264_05185at 1203.497 kb on + strand, within CA264_05185at 1203.498 kb on - strandat 1203.503 kb on - strand, within CA264_05185at 1203.559 kb on + strand, within CA264_05185at 1203.582 kb on - strand, within CA264_05185at 1203.781 kb on + strand, within CA264_05185at 1203.782 kb on - strand, within CA264_05185at 1203.968 kb on - strandat 1203.973 kb on + strandat 1203.985 kb on + strandat 1203.991 kb on - strandat 1203.991 kb on - strandat 1203.995 kb on + strandat 1203.996 kb on - strandat 1204.017 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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1,201,385 + CA264_05170 0.77 -0.3
1,201,386 - CA264_05170 0.77 -2.0
1,201,386 - CA264_05170 0.77 -0.8
1,201,386 - CA264_05170 0.77 -2.1
1,201,389 + CA264_05170 0.78 -0.5
1,201,389 + CA264_05170 0.78 -1.1
1,201,389 + CA264_05170 0.78 -2.2
1,201,389 + CA264_05170 0.78 -0.8
1,201,390 - CA264_05170 0.78 +0.3
1,201,390 - CA264_05170 0.78 -1.5
1,201,390 - CA264_05170 0.78 -3.4
1,201,390 - CA264_05170 0.78 -1.4
1,201,390 - CA264_05170 0.78 -2.0
1,201,393 + CA264_05170 0.78 -1.4
1,201,485 - +0.2
1,201,493 + -1.3
1,201,494 - -0.9
1,201,497 + -1.7
1,201,553 + -3.0
1,201,615 - -1.4
1,201,616 + -1.9
1,201,698 + CA264_05175 0.18 -0.5
1,201,698 + CA264_05175 0.18 -1.3
1,201,704 - CA264_05175 0.20 -1.4
1,201,704 - CA264_05175 0.20 -0.9
1,201,779 - CA264_05175 0.36 -1.5
1,201,913 - CA264_05175 0.65 -1.7
1,202,002 - CA264_05175 0.84 -1.0
1,202,002 - CA264_05175 0.84 -2.1
1,202,089 - -1.3
1,202,091 + -1.4
1,202,092 - +0.7
1,202,092 - -2.8
1,202,094 + -0.4
1,202,168 + -2.3
1,202,169 - -1.5
1,202,172 - -1.5
1,202,173 + -1.5
1,202,173 + -1.9
1,202,174 - -1.8
1,202,227 - -0.1
1,202,245 + -1.3
1,202,245 + -3.2
1,202,246 - -1.2
1,202,246 - -1.6
1,202,262 - +1.1
1,202,293 - -1.5
1,202,372 + CA264_05180 0.15 -0.7
1,202,372 + CA264_05180 0.15 -0.6
1,202,373 - CA264_05180 0.15 -2.4
1,202,444 + CA264_05180 0.24 -1.4
1,202,470 + CA264_05180 0.27 -1.5
1,202,470 + CA264_05180 0.27 -0.1
1,202,478 - CA264_05180 0.28 -1.8
1,202,498 + CA264_05180 0.30 -0.7
1,202,498 + CA264_05180 0.30 -1.0
1,202,499 - CA264_05180 0.30 +0.3
1,202,499 - CA264_05180 0.30 -0.7
1,202,499 - CA264_05180 0.30 -1.9
1,202,518 + CA264_05180 0.33 -0.7
1,202,518 + CA264_05180 0.33 -2.1
1,202,519 - CA264_05180 0.33 +0.4
1,202,519 - CA264_05180 0.33 -1.6
1,202,519 - CA264_05180 0.33 -1.5
1,202,519 - CA264_05180 0.33 -0.9
1,202,519 - CA264_05180 0.33 -1.7
1,202,522 + CA264_05180 0.33 -1.1
1,202,522 + CA264_05180 0.33 -0.7
1,202,523 - CA264_05180 0.33 -1.4
1,202,532 + CA264_05180 0.34 +0.5
1,202,580 - CA264_05180 0.40 -3.4
1,202,625 - CA264_05180 0.45 -0.3
1,202,735 + CA264_05180 0.59 -1.5
1,202,865 + CA264_05180 0.74 -0.4
1,202,883 + CA264_05180 0.76 -2.1
1,202,883 + CA264_05180 0.76 -1.3
1,202,883 + CA264_05180 0.76 -1.0
1,202,883 + CA264_05180 0.76 -1.5
1,202,884 - CA264_05180 0.76 -0.5
1,202,884 - CA264_05180 0.76 -1.1
1,202,884 - CA264_05180 0.76 +0.5
1,202,884 - CA264_05180 0.76 -0.4
1,202,885 + CA264_05180 0.77 +0.2
1,202,886 - CA264_05180 0.77 +1.2
1,202,886 - CA264_05180 0.77 +1.7
1,202,913 + CA264_05180 0.80 -0.4
1,202,913 + CA264_05180 0.80 -1.3
1,202,914 - CA264_05180 0.80 -1.3
1,202,914 - CA264_05180 0.80 -0.1
1,202,914 - CA264_05180 0.80 +0.2
1,202,914 - CA264_05180 0.80 -0.8
1,202,914 - CA264_05180 0.80 -0.7
1,202,914 - CA264_05180 0.80 -0.5
1,202,995 + CA264_05180 0.90 -1.0
1,203,006 - -0.8
1,203,053 - -0.1
1,203,094 + +1.7
1,203,095 - -0.4
1,203,116 - -1.5
1,203,117 + -0.2
1,203,117 + -0.5
1,203,118 - -1.4
1,203,118 - -1.4
1,203,197 + -0.2
1,203,242 - +0.4
1,203,292 + CA264_05185 0.10 -2.3
1,203,292 + CA264_05185 0.10 -0.5
1,203,344 - CA264_05185 0.17 -2.3
1,203,375 + CA264_05185 0.21 -0.4
1,203,436 - CA264_05185 0.29 -1.2
1,203,487 + CA264_05185 0.35 +0.2
1,203,497 + CA264_05185 0.36 -2.9
1,203,498 - +0.2
1,203,503 - CA264_05185 0.37 -2.5
1,203,559 + CA264_05185 0.44 -2.0
1,203,582 - CA264_05185 0.47 -2.6
1,203,781 + CA264_05185 0.73 -1.5
1,203,782 - CA264_05185 0.73 -1.6
1,203,968 - -0.2
1,203,973 + -0.3
1,203,985 + -0.6
1,203,991 - -1.3
1,203,991 - -0.8
1,203,995 + +1.9
1,203,996 - -1.4
1,204,017 - -2.6

Or see this region's nucleotide sequence