Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04300

Experiment: m.b. A22 0.04 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_04295 and CA264_04300 are separated by 12 nucleotidesCA264_04300 and CA264_04305 are separated by 513 nucleotides CA264_04295: CA264_04295 - hypothetical protein, at 990,738 to 992,126 _04295 CA264_04300: CA264_04300 - ABC transporter substrate-binding protein, at 992,139 to 993,863 _04300 CA264_04305: CA264_04305 - hypothetical protein, at 994,377 to 995,858 _04305 Position (kb) 992 993 994Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 991.204 kb on + strand, within CA264_04295at 991.362 kb on + strand, within CA264_04295at 991.363 kb on - strand, within CA264_04295at 991.367 kb on + strand, within CA264_04295at 991.523 kb on - strand, within CA264_04295at 991.570 kb on + strand, within CA264_04295at 991.591 kb on - strand, within CA264_04295at 991.591 kb on - strand, within CA264_04295at 991.638 kb on - strand, within CA264_04295at 991.667 kb on + strand, within CA264_04295at 991.703 kb on - strand, within CA264_04295at 991.710 kb on + strand, within CA264_04295at 991.943 kb on - strand, within CA264_04295at 991.951 kb on + strand, within CA264_04295at 991.951 kb on + strand, within CA264_04295at 991.988 kb on - strandat 992.010 kb on + strandat 992.010 kb on + strandat 992.053 kb on - strandat 992.097 kb on + strandat 992.098 kb on - strandat 992.101 kb on - strandat 992.101 kb on - strandat 992.116 kb on + strandat 992.116 kb on + strandat 992.117 kb on - strandat 992.117 kb on - strandat 992.117 kb on - strandat 992.140 kb on + strandat 992.140 kb on + strandat 992.141 kb on - strandat 992.152 kb on - strandat 992.173 kb on + strandat 992.272 kb on + strandat 992.272 kb on + strandat 992.272 kb on + strandat 992.276 kb on + strandat 992.276 kb on + strandat 992.276 kb on + strandat 992.324 kb on + strand, within CA264_04300at 992.337 kb on + strand, within CA264_04300at 992.397 kb on + strand, within CA264_04300at 992.407 kb on + strand, within CA264_04300at 992.573 kb on + strand, within CA264_04300at 992.731 kb on + strand, within CA264_04300at 992.732 kb on - strand, within CA264_04300at 992.912 kb on + strand, within CA264_04300at 993.000 kb on - strand, within CA264_04300at 993.110 kb on + strand, within CA264_04300at 993.111 kb on - strand, within CA264_04300at 993.116 kb on + strand, within CA264_04300at 993.120 kb on - strand, within CA264_04300at 993.187 kb on + strand, within CA264_04300at 993.343 kb on + strand, within CA264_04300at 993.491 kb on + strand, within CA264_04300at 993.496 kb on - strand, within CA264_04300at 993.524 kb on + strand, within CA264_04300at 993.525 kb on - strand, within CA264_04300at 993.590 kb on - strand, within CA264_04300at 993.593 kb on + strand, within CA264_04300at 993.594 kb on - strand, within CA264_04300at 993.705 kb on - strandat 993.740 kb on + strandat 993.741 kb on - strandat 993.780 kb on + strandat 993.829 kb on - strandat 993.846 kb on + strandat 993.865 kb on + strandat 993.865 kb on + strandat 993.866 kb on - strandat 993.866 kb on - strandat 993.869 kb on + strandat 993.870 kb on - strandat 993.934 kb on + strandat 993.991 kb on + strandat 993.992 kb on - strandat 994.029 kb on - strandat 994.076 kb on - strandat 994.081 kb on - strandat 994.081 kb on - strandat 994.116 kb on + strandat 994.132 kb on + strandat 994.266 kb on + strandat 994.277 kb on - strandat 994.345 kb on - strandat 994.373 kb on + strandat 994.405 kb on + strandat 994.405 kb on + strandat 994.409 kb on + strandat 994.409 kb on + strandat 994.409 kb on + strandat 994.417 kb on + strandat 994.417 kb on + strandat 994.417 kb on + strandat 994.418 kb on - strandat 994.500 kb on + strandat 994.512 kb on + strandat 994.513 kb on - strandat 994.513 kb on - strandat 994.516 kb on + strandat 994.516 kb on + strandat 994.533 kb on + strand, within CA264_04305at 994.539 kb on - strand, within CA264_04305at 994.571 kb on - strand, within CA264_04305at 994.601 kb on + strand, within CA264_04305at 994.606 kb on + strand, within CA264_04305at 994.630 kb on - strand, within CA264_04305at 994.705 kb on + strand, within CA264_04305at 994.729 kb on - strand, within CA264_04305at 994.733 kb on - strand, within CA264_04305at 994.753 kb on + strand, within CA264_04305at 994.757 kb on + strand, within CA264_04305at 994.776 kb on - strand, within CA264_04305at 994.801 kb on + strand, within CA264_04305at 994.807 kb on + strand, within CA264_04305at 994.808 kb on - strand, within CA264_04305at 994.830 kb on - strand, within CA264_04305at 994.833 kb on + strand, within CA264_04305at 994.836 kb on - strand, within CA264_04305

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
remove
991,204 + CA264_04295 0.34 -0.7
991,362 + CA264_04295 0.45 -2.9
991,363 - CA264_04295 0.45 -3.6
991,367 + CA264_04295 0.45 -4.7
991,523 - CA264_04295 0.57 -3.4
991,570 + CA264_04295 0.60 -2.5
991,591 - CA264_04295 0.61 -4.1
991,591 - CA264_04295 0.61 -4.5
991,638 - CA264_04295 0.65 -4.1
991,667 + CA264_04295 0.67 -2.5
991,703 - CA264_04295 0.69 -1.8
991,710 + CA264_04295 0.70 -3.3
991,943 - CA264_04295 0.87 -1.0
991,951 + CA264_04295 0.87 -4.2
991,951 + CA264_04295 0.87 -4.4
991,988 - -3.7
992,010 + -1.7
992,010 + -3.5
992,053 - -1.1
992,097 + -1.2
992,098 - -0.1
992,101 - -4.2
992,101 - -0.4
992,116 + -2.7
992,116 + -2.2
992,117 - -3.0
992,117 - -2.4
992,117 - +0.0
992,140 + -2.7
992,140 + -3.1
992,141 - -0.1
992,152 - +0.3
992,173 + -3.8
992,272 + -3.6
992,272 + -3.2
992,272 + -2.7
992,276 + -4.3
992,276 + -4.1
992,276 + -3.8
992,324 + CA264_04300 0.11 -0.3
992,337 + CA264_04300 0.11 -1.3
992,397 + CA264_04300 0.15 -4.9
992,407 + CA264_04300 0.16 -3.1
992,573 + CA264_04300 0.25 -1.7
992,731 + CA264_04300 0.34 -3.6
992,732 - CA264_04300 0.34 -3.3
992,912 + CA264_04300 0.45 -3.6
993,000 - CA264_04300 0.50 -3.4
993,110 + CA264_04300 0.56 -4.8
993,111 - CA264_04300 0.56 -2.9
993,116 + CA264_04300 0.57 -4.3
993,120 - CA264_04300 0.57 -3.3
993,187 + CA264_04300 0.61 -3.7
993,343 + CA264_04300 0.70 -3.6
993,491 + CA264_04300 0.78 -2.7
993,496 - CA264_04300 0.79 -2.1
993,524 + CA264_04300 0.80 -2.1
993,525 - CA264_04300 0.80 -2.6
993,590 - CA264_04300 0.84 -2.0
993,593 + CA264_04300 0.84 -2.5
993,594 - CA264_04300 0.84 -0.3
993,705 - -2.1
993,740 + -4.6
993,741 - -1.6
993,780 + -2.9
993,829 - -2.7
993,846 + -2.3
993,865 + -1.7
993,865 + -1.1
993,866 - -1.3
993,866 - +0.4
993,869 + -0.3
993,870 - -0.4
993,934 + -1.5
993,991 + -1.9
993,992 - -0.4
994,029 - +1.1
994,076 - -0.8
994,081 - -0.2
994,081 - +0.5
994,116 + -1.9
994,132 + -2.3
994,266 + +0.3
994,277 - -0.2
994,345 - -0.1
994,373 + -1.4
994,405 + -2.9
994,405 + -2.2
994,409 + -3.8
994,409 + -1.3
994,409 + -3.8
994,417 + -2.7
994,417 + -1.6
994,417 + -3.1
994,418 - -3.5
994,500 + -5.6
994,512 + -2.1
994,513 - -3.3
994,513 - -3.1
994,516 + -2.9
994,516 + -3.1
994,533 + CA264_04305 0.11 -3.2
994,539 - CA264_04305 0.11 -2.8
994,571 - CA264_04305 0.13 -4.2
994,601 + CA264_04305 0.15 -2.5
994,606 + CA264_04305 0.15 -1.7
994,630 - CA264_04305 0.17 -2.3
994,705 + CA264_04305 0.22 -3.0
994,729 - CA264_04305 0.24 -2.9
994,733 - CA264_04305 0.24 -1.6
994,753 + CA264_04305 0.25 -4.4
994,757 + CA264_04305 0.26 -1.6
994,776 - CA264_04305 0.27 -1.1
994,801 + CA264_04305 0.29 -1.6
994,807 + CA264_04305 0.29 -2.4
994,808 - CA264_04305 0.29 -3.8
994,830 - CA264_04305 0.31 -4.4
994,833 + CA264_04305 0.31 -5.4
994,836 - CA264_04305 0.31 -1.4

Or see this region's nucleotide sequence