Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03770

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03760 and CA264_03765 are separated by 91 nucleotidesCA264_03765 and CA264_03770 are separated by 178 nucleotidesCA264_03770 and CA264_03775 are separated by 153 nucleotides CA264_03760: CA264_03760 - hypothetical protein, at 883,267 to 883,659 _03760 CA264_03765: CA264_03765 - tRNA-Glu, at 883,751 to 883,825 _03765 CA264_03770: CA264_03770 - type I glyceraldehyde-3-phosphate dehydrogenase, at 884,004 to 884,996 _03770 CA264_03775: CA264_03775 - hypothetical protein, at 885,150 to 886,034 _03775 Position (kb) 884 885Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 883.021 kb on - strandat 883.024 kb on + strandat 883.044 kb on + strandat 883.045 kb on - strandat 883.045 kb on - strandat 883.045 kb on - strandat 883.048 kb on + strandat 883.105 kb on - strandat 883.107 kb on - strandat 883.169 kb on + strandat 883.210 kb on + strandat 883.261 kb on + strandat 883.261 kb on + strandat 883.294 kb on + strandat 883.294 kb on + strandat 883.296 kb on + strandat 883.302 kb on + strandat 883.323 kb on + strand, within CA264_03760at 883.343 kb on + strand, within CA264_03760at 883.343 kb on + strand, within CA264_03760at 883.344 kb on - strand, within CA264_03760at 883.372 kb on + strand, within CA264_03760at 883.372 kb on + strand, within CA264_03760at 883.373 kb on - strand, within CA264_03760at 883.394 kb on - strand, within CA264_03760at 883.409 kb on + strand, within CA264_03760at 883.410 kb on - strand, within CA264_03760at 883.410 kb on - strand, within CA264_03760at 883.414 kb on + strand, within CA264_03760at 883.439 kb on - strand, within CA264_03760at 883.516 kb on - strand, within CA264_03760at 883.517 kb on + strand, within CA264_03760at 883.517 kb on + strand, within CA264_03760at 883.517 kb on + strand, within CA264_03760at 883.517 kb on + strand, within CA264_03760at 883.518 kb on - strand, within CA264_03760at 883.564 kb on - strand, within CA264_03760at 883.589 kb on - strand, within CA264_03760at 883.658 kb on - strandat 883.665 kb on - strandat 883.672 kb on - strandat 883.672 kb on - strandat 883.888 kb on + strandat 883.912 kb on + strandat 883.951 kb on + strandat 883.952 kb on - strandat 883.956 kb on + strandat 883.956 kb on + strandat 883.957 kb on - strandat 885.068 kb on + strandat 885.087 kb on + strandat 885.104 kb on + strandat 885.104 kb on + strandat 885.104 kb on + strandat 885.105 kb on - strandat 885.106 kb on + strandat 885.106 kb on + strandat 885.107 kb on - strandat 885.107 kb on - strandat 885.107 kb on - strandat 885.140 kb on + strandat 885.167 kb on + strandat 885.196 kb on + strandat 885.309 kb on + strand, within CA264_03775at 885.370 kb on + strand, within CA264_03775at 885.681 kb on - strand, within CA264_03775at 885.752 kb on - strand, within CA264_03775at 885.752 kb on - strand, within CA264_03775at 885.752 kb on - strand, within CA264_03775at 885.755 kb on - strand, within CA264_03775at 885.755 kb on - strand, within CA264_03775at 885.755 kb on - strand, within CA264_03775at 885.756 kb on + strand, within CA264_03775at 885.756 kb on + strand, within CA264_03775at 885.757 kb on - strand, within CA264_03775at 885.757 kb on - strand, within CA264_03775at 885.757 kb on - strand, within CA264_03775at 885.757 kb on - strand, within CA264_03775at 885.765 kb on - strand, within CA264_03775at 885.829 kb on - strand, within CA264_03775at 885.843 kb on + strand, within CA264_03775at 885.843 kb on + strand, within CA264_03775at 885.843 kb on + strand, within CA264_03775at 885.844 kb on - strand, within CA264_03775at 885.844 kb on - strand, within CA264_03775at 885.844 kb on - strand, within CA264_03775at 885.845 kb on + strand, within CA264_03775at 885.845 kb on + strand, within CA264_03775at 885.962 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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883,021 - -2.0
883,024 + -2.5
883,044 + -1.3
883,045 - -2.2
883,045 - -3.1
883,045 - -0.9
883,048 + -2.8
883,105 - -2.3
883,107 - -6.3
883,169 + -3.7
883,210 + -1.0
883,261 + -2.7
883,261 + -4.3
883,294 + -0.7
883,294 + -2.1
883,296 + -2.3
883,302 + -2.1
883,323 + CA264_03760 0.14 -1.8
883,343 + CA264_03760 0.19 -1.4
883,343 + CA264_03760 0.19 -2.3
883,344 - CA264_03760 0.20 -3.6
883,372 + CA264_03760 0.27 -0.9
883,372 + CA264_03760 0.27 -2.4
883,373 - CA264_03760 0.27 -2.6
883,394 - CA264_03760 0.32 -0.6
883,409 + CA264_03760 0.36 -2.2
883,410 - CA264_03760 0.36 -3.5
883,410 - CA264_03760 0.36 -0.9
883,414 + CA264_03760 0.37 -0.7
883,439 - CA264_03760 0.44 -2.2
883,516 - CA264_03760 0.63 -4.0
883,517 + CA264_03760 0.64 -1.4
883,517 + CA264_03760 0.64 -1.1
883,517 + CA264_03760 0.64 -0.7
883,517 + CA264_03760 0.64 +1.0
883,518 - CA264_03760 0.64 -3.7
883,564 - CA264_03760 0.76 -3.9
883,589 - CA264_03760 0.82 -1.8
883,658 - -2.6
883,665 - -2.0
883,672 - -2.5
883,672 - -2.0
883,888 + +0.2
883,912 + +0.6
883,951 + +0.0
883,952 - +1.4
883,956 + +1.2
883,956 + +0.4
883,957 - +0.6
885,068 + -1.1
885,087 + +0.3
885,104 + -0.1
885,104 + +0.2
885,104 + -0.3
885,105 - -0.6
885,106 + +0.6
885,106 + +0.3
885,107 - -2.1
885,107 - +1.0
885,107 - -0.9
885,140 + +0.2
885,167 + +0.4
885,196 + +0.3
885,309 + CA264_03775 0.18 -0.4
885,370 + CA264_03775 0.25 -0.6
885,681 - CA264_03775 0.60 -0.3
885,752 - CA264_03775 0.68 -0.1
885,752 - CA264_03775 0.68 -0.1
885,752 - CA264_03775 0.68 +0.1
885,755 - CA264_03775 0.68 -0.4
885,755 - CA264_03775 0.68 +0.4
885,755 - CA264_03775 0.68 +0.1
885,756 + CA264_03775 0.68 +0.4
885,756 + CA264_03775 0.68 +0.4
885,757 - CA264_03775 0.69 -0.4
885,757 - CA264_03775 0.69 -0.9
885,757 - CA264_03775 0.69 -0.4
885,757 - CA264_03775 0.69 +0.1
885,765 - CA264_03775 0.69 -0.0
885,829 - CA264_03775 0.77 -0.8
885,843 + CA264_03775 0.78 +0.6
885,843 + CA264_03775 0.78 -0.0
885,843 + CA264_03775 0.78 +0.2
885,844 - CA264_03775 0.78 -0.9
885,844 - CA264_03775 0.78 -0.4
885,844 - CA264_03775 0.78 +0.4
885,845 + CA264_03775 0.79 +0.6
885,845 + CA264_03775 0.79 +1.7
885,962 - +0.2

Or see this region's nucleotide sequence