Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03575

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03570 and CA264_03575 overlap by 14 nucleotidesCA264_03575 and CA264_03580 are separated by 100 nucleotides CA264_03570: CA264_03570 - hypothetical protein, at 830,940 to 831,854 _03570 CA264_03575: CA264_03575 - hypothetical protein, at 831,841 to 832,755 _03575 CA264_03580: CA264_03580 - ATP-dependent helicase HrpB, at 832,856 to 835,303 _03580 Position (kb) 831 832 833Strain fitness (log2 ratio) -2 -1 0 1 2at 830.862 kb on + strandat 830.880 kb on - strandat 830.891 kb on - strandat 830.891 kb on - strandat 830.893 kb on + strandat 830.902 kb on - strandat 830.907 kb on + strandat 830.907 kb on + strandat 830.908 kb on - strandat 830.911 kb on + strandat 830.912 kb on - strandat 830.918 kb on + strandat 830.918 kb on + strandat 830.919 kb on - strandat 830.919 kb on - strandat 830.919 kb on - strandat 830.923 kb on + strandat 830.925 kb on + strandat 830.925 kb on + strandat 830.926 kb on - strandat 830.926 kb on - strandat 830.948 kb on + strandat 831.026 kb on + strandat 831.028 kb on + strandat 831.028 kb on + strandat 831.029 kb on - strandat 831.049 kb on + strand, within CA264_03570at 831.071 kb on + strand, within CA264_03570at 831.111 kb on + strand, within CA264_03570at 831.140 kb on - strand, within CA264_03570at 831.140 kb on - strand, within CA264_03570at 831.168 kb on - strandat 831.194 kb on - strand, within CA264_03570at 831.194 kb on - strand, within CA264_03570at 831.194 kb on - strand, within CA264_03570at 831.197 kb on - strand, within CA264_03570at 831.223 kb on - strand, within CA264_03570at 831.236 kb on - strand, within CA264_03570at 831.239 kb on + strand, within CA264_03570at 831.265 kb on + strand, within CA264_03570at 831.266 kb on - strand, within CA264_03570at 831.359 kb on - strand, within CA264_03570at 831.433 kb on + strand, within CA264_03570at 831.433 kb on + strand, within CA264_03570at 831.434 kb on - strand, within CA264_03570at 831.445 kb on + strand, within CA264_03570at 831.446 kb on - strand, within CA264_03570at 831.467 kb on - strand, within CA264_03570at 831.512 kb on + strand, within CA264_03570at 831.513 kb on - strand, within CA264_03570at 831.513 kb on - strand, within CA264_03570at 831.517 kb on - strand, within CA264_03570at 831.517 kb on - strand, within CA264_03570at 831.517 kb on - strand, within CA264_03570at 831.517 kb on - strand, within CA264_03570at 831.574 kb on + strand, within CA264_03570at 831.615 kb on + strand, within CA264_03570at 831.616 kb on - strand, within CA264_03570at 831.617 kb on + strand, within CA264_03570at 831.617 kb on + strand, within CA264_03570at 831.618 kb on - strand, within CA264_03570at 831.623 kb on + strand, within CA264_03570at 831.623 kb on + strand, within CA264_03570at 831.627 kb on + strand, within CA264_03570at 831.628 kb on - strand, within CA264_03570at 831.629 kb on + strand, within CA264_03570at 831.629 kb on + strand, within CA264_03570at 831.630 kb on - strand, within CA264_03570at 831.633 kb on + strand, within CA264_03570at 831.633 kb on + strand, within CA264_03570at 831.680 kb on + strand, within CA264_03570at 831.695 kb on + strand, within CA264_03570at 831.696 kb on - strand, within CA264_03570at 831.696 kb on - strand, within CA264_03570at 831.698 kb on - strand, within CA264_03570at 831.698 kb on - strand, within CA264_03570at 831.718 kb on - strand, within CA264_03570at 831.718 kb on - strand, within CA264_03570at 831.718 kb on - strand, within CA264_03570at 831.729 kb on + strand, within CA264_03570at 831.730 kb on - strand, within CA264_03570at 831.740 kb on + strand, within CA264_03570at 831.751 kb on - strand, within CA264_03570at 831.770 kb on + strandat 831.771 kb on - strandat 831.867 kb on + strandat 831.869 kb on + strandat 831.869 kb on + strandat 831.869 kb on + strandat 831.927 kb on + strandat 832.006 kb on + strand, within CA264_03575at 832.007 kb on - strand, within CA264_03575at 832.007 kb on - strand, within CA264_03575at 832.007 kb on - strand, within CA264_03575at 832.008 kb on + strand, within CA264_03575at 832.009 kb on - strand, within CA264_03575at 832.009 kb on - strand, within CA264_03575at 832.010 kb on + strand, within CA264_03575at 832.047 kb on + strand, within CA264_03575at 832.048 kb on - strand, within CA264_03575at 832.064 kb on - strand, within CA264_03575at 832.064 kb on - strand, within CA264_03575at 832.065 kb on + strand, within CA264_03575at 832.066 kb on - strand, within CA264_03575at 832.212 kb on - strand, within CA264_03575at 832.228 kb on - strand, within CA264_03575at 832.241 kb on + strand, within CA264_03575at 832.244 kb on + strand, within CA264_03575at 832.263 kb on - strand, within CA264_03575at 832.266 kb on + strand, within CA264_03575at 832.267 kb on - strand, within CA264_03575at 832.292 kb on + strand, within CA264_03575at 832.292 kb on + strand, within CA264_03575at 832.293 kb on - strand, within CA264_03575at 832.293 kb on - strand, within CA264_03575at 832.293 kb on - strand, within CA264_03575at 832.293 kb on - strand, within CA264_03575at 832.301 kb on + strand, within CA264_03575at 832.301 kb on + strand, within CA264_03575at 832.301 kb on + strand, within CA264_03575at 832.301 kb on + strand, within CA264_03575at 832.301 kb on + strand, within CA264_03575at 832.301 kb on + strand, within CA264_03575at 832.302 kb on - strand, within CA264_03575at 832.302 kb on - strand, within CA264_03575at 832.305 kb on + strand, within CA264_03575at 832.305 kb on + strand, within CA264_03575at 832.306 kb on - strand, within CA264_03575at 832.365 kb on - strand, within CA264_03575at 832.460 kb on - strand, within CA264_03575at 832.460 kb on - strand, within CA264_03575at 832.485 kb on + strand, within CA264_03575at 832.503 kb on + strand, within CA264_03575at 832.539 kb on + strand, within CA264_03575at 832.539 kb on + strand, within CA264_03575at 832.539 kb on + strand, within CA264_03575at 832.582 kb on - strand, within CA264_03575at 832.594 kb on - strand, within CA264_03575at 832.653 kb on - strand, within CA264_03575at 832.661 kb on - strand, within CA264_03575at 832.661 kb on - strand, within CA264_03575at 832.762 kb on - strandat 832.762 kb on - strandat 832.784 kb on + strandat 832.785 kb on - strandat 832.787 kb on + strandat 832.793 kb on - strandat 832.801 kb on + strandat 832.802 kb on - strandat 832.805 kb on + strandat 832.805 kb on + strandat 832.805 kb on + strandat 832.836 kb on - strandat 832.842 kb on + strandat 832.845 kb on - strandat 832.849 kb on + strandat 832.849 kb on + strandat 832.873 kb on + strandat 832.902 kb on + strandat 832.903 kb on - strandat 832.936 kb on + strandat 832.936 kb on + strandat 832.936 kb on + strandat 832.937 kb on - strandat 832.947 kb on + strandat 832.970 kb on - strandat 833.277 kb on + strand, within CA264_03580at 833.278 kb on - strand, within CA264_03580at 833.333 kb on - strand, within CA264_03580at 833.347 kb on + strand, within CA264_03580at 833.401 kb on + strand, within CA264_03580at 833.402 kb on - strand, within CA264_03580at 833.402 kb on - strand, within CA264_03580at 833.432 kb on + strand, within CA264_03580at 833.432 kb on + strand, within CA264_03580at 833.485 kb on - strand, within CA264_03580at 833.644 kb on + strand, within CA264_03580at 833.689 kb on + strand, within CA264_03580at 833.690 kb on - strand, within CA264_03580at 833.690 kb on - strand, within CA264_03580at 833.712 kb on + strand, within CA264_03580at 833.713 kb on - strand, within CA264_03580at 833.720 kb on - strand, within CA264_03580

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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830,862 + -1.4
830,880 - +0.1
830,891 - -0.4
830,891 - -0.9
830,893 + +1.5
830,902 - +1.0
830,907 + -0.0
830,907 + -0.5
830,908 - +1.0
830,911 + +0.6
830,912 - +0.1
830,918 + -0.2
830,918 + +0.2
830,919 - +0.4
830,919 - +0.7
830,919 - -0.1
830,923 + -0.1
830,925 + -0.8
830,925 + +0.0
830,926 - -1.1
830,926 - +0.6
830,948 + -0.5
831,026 + +0.1
831,028 + +0.0
831,028 + -0.5
831,029 - +0.0
831,049 + CA264_03570 0.12 -0.4
831,071 + CA264_03570 0.14 -0.4
831,111 + CA264_03570 0.19 -0.5
831,140 - CA264_03570 0.22 +0.6
831,140 - CA264_03570 0.22 -0.6
831,168 - +2.7
831,194 - CA264_03570 0.28 -0.0
831,194 - CA264_03570 0.28 +0.4
831,194 - CA264_03570 0.28 -0.7
831,197 - CA264_03570 0.28 -0.2
831,223 - CA264_03570 0.31 +1.4
831,236 - CA264_03570 0.32 -0.5
831,239 + CA264_03570 0.33 -0.2
831,265 + CA264_03570 0.36 -1.0
831,266 - CA264_03570 0.36 -1.1
831,359 - CA264_03570 0.46 -2.3
831,433 + CA264_03570 0.54 -0.4
831,433 + CA264_03570 0.54 -1.4
831,434 - CA264_03570 0.54 -0.1
831,445 + CA264_03570 0.55 +0.6
831,446 - CA264_03570 0.55 -0.3
831,467 - CA264_03570 0.58 -0.0
831,512 + CA264_03570 0.63 +0.4
831,513 - CA264_03570 0.63 -1.2
831,513 - CA264_03570 0.63 -0.6
831,517 - CA264_03570 0.63 -0.9
831,517 - CA264_03570 0.63 -0.7
831,517 - CA264_03570 0.63 +0.6
831,517 - CA264_03570 0.63 -1.7
831,574 + CA264_03570 0.69 -0.6
831,615 + CA264_03570 0.74 +0.5
831,616 - CA264_03570 0.74 -0.1
831,617 + CA264_03570 0.74 +2.1
831,617 + CA264_03570 0.74 -0.2
831,618 - CA264_03570 0.74 -0.9
831,623 + CA264_03570 0.75 -0.2
831,623 + CA264_03570 0.75 -0.0
831,627 + CA264_03570 0.75 -0.5
831,628 - CA264_03570 0.75 -0.4
831,629 + CA264_03570 0.75 -0.2
831,629 + CA264_03570 0.75 -0.1
831,630 - CA264_03570 0.75 -0.8
831,633 + CA264_03570 0.76 -0.9
831,633 + CA264_03570 0.76 -0.8
831,680 + CA264_03570 0.81 -0.7
831,695 + CA264_03570 0.83 -0.6
831,696 - CA264_03570 0.83 -0.8
831,696 - CA264_03570 0.83 -0.9
831,698 - CA264_03570 0.83 -2.0
831,698 - CA264_03570 0.83 +0.9
831,718 - CA264_03570 0.85 -0.7
831,718 - CA264_03570 0.85 -0.0
831,718 - CA264_03570 0.85 -0.9
831,729 + CA264_03570 0.86 +0.6
831,730 - CA264_03570 0.86 -0.8
831,740 + CA264_03570 0.87 -0.0
831,751 - CA264_03570 0.89 -1.1
831,770 + -0.4
831,771 - -1.2
831,867 + -0.4
831,869 + -0.3
831,869 + -0.3
831,869 + -0.5
831,927 + +0.3
832,006 + CA264_03575 0.18 -0.4
832,007 - CA264_03575 0.18 -0.7
832,007 - CA264_03575 0.18 -1.2
832,007 - CA264_03575 0.18 -1.0
832,008 + CA264_03575 0.18 -0.3
832,009 - CA264_03575 0.18 -0.6
832,009 - CA264_03575 0.18 -1.5
832,010 + CA264_03575 0.18 -0.8
832,047 + CA264_03575 0.23 -0.3
832,048 - CA264_03575 0.23 -0.5
832,064 - CA264_03575 0.24 +0.8
832,064 - CA264_03575 0.24 -0.4
832,065 + CA264_03575 0.24 -1.7
832,066 - CA264_03575 0.25 -0.6
832,212 - CA264_03575 0.41 -0.6
832,228 - CA264_03575 0.42 -0.5
832,241 + CA264_03575 0.44 -1.6
832,244 + CA264_03575 0.44 +0.8
832,263 - CA264_03575 0.46 -1.3
832,266 + CA264_03575 0.46 -0.8
832,267 - CA264_03575 0.47 -1.0
832,292 + CA264_03575 0.49 +0.6
832,292 + CA264_03575 0.49 +0.2
832,293 - CA264_03575 0.49 -0.6
832,293 - CA264_03575 0.49 -1.2
832,293 - CA264_03575 0.49 -1.2
832,293 - CA264_03575 0.49 -0.6
832,301 + CA264_03575 0.50 +0.2
832,301 + CA264_03575 0.50 -0.1
832,301 + CA264_03575 0.50 -0.3
832,301 + CA264_03575 0.50 -0.2
832,301 + CA264_03575 0.50 -0.9
832,301 + CA264_03575 0.50 +1.2
832,302 - CA264_03575 0.50 -1.1
832,302 - CA264_03575 0.50 -2.3
832,305 + CA264_03575 0.51 +0.2
832,305 + CA264_03575 0.51 -0.7
832,306 - CA264_03575 0.51 +0.1
832,365 - CA264_03575 0.57 -0.5
832,460 - CA264_03575 0.68 -0.5
832,460 - CA264_03575 0.68 -1.4
832,485 + CA264_03575 0.70 -0.3
832,503 + CA264_03575 0.72 -0.2
832,539 + CA264_03575 0.76 -0.7
832,539 + CA264_03575 0.76 -0.3
832,539 + CA264_03575 0.76 -1.1
832,582 - CA264_03575 0.81 +0.4
832,594 - CA264_03575 0.82 -2.3
832,653 - CA264_03575 0.89 -0.6
832,661 - CA264_03575 0.90 -0.0
832,661 - CA264_03575 0.90 -0.7
832,762 - -1.1
832,762 - +0.1
832,784 + -0.1
832,785 - -1.9
832,787 + -0.1
832,793 - -1.4
832,801 + -1.0
832,802 - -1.0
832,805 + -0.5
832,805 + -0.3
832,805 + +0.8
832,836 - -0.3
832,842 + -0.1
832,845 - -0.8
832,849 + -0.6
832,849 + -0.4
832,873 + +0.8
832,902 + -1.2
832,903 - -0.6
832,936 + +0.7
832,936 + -0.4
832,936 + +0.1
832,937 - -0.2
832,947 + -0.9
832,970 - -0.5
833,277 + CA264_03580 0.17 +0.1
833,278 - CA264_03580 0.17 -0.1
833,333 - CA264_03580 0.19 -1.0
833,347 + CA264_03580 0.20 +0.7
833,401 + CA264_03580 0.22 -0.7
833,402 - CA264_03580 0.22 -0.5
833,402 - CA264_03580 0.22 +1.0
833,432 + CA264_03580 0.24 -0.7
833,432 + CA264_03580 0.24 -0.7
833,485 - CA264_03580 0.26 -0.5
833,644 + CA264_03580 0.32 -0.4
833,689 + CA264_03580 0.34 +0.3
833,690 - CA264_03580 0.34 -0.9
833,690 - CA264_03580 0.34 -0.1
833,712 + CA264_03580 0.35 +1.0
833,713 - CA264_03580 0.35 -0.1
833,720 - CA264_03580 0.35 -0.5

Or see this region's nucleotide sequence