Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03540 and CA264_03545 are separated by 497 nucleotides CA264_03545 and CA264_03550 are separated by 537 nucleotides
CA264_03540: CA264_03540 - AraC family transcriptional regulator, at 823,538 to 824,446
_03540
CA264_03545: CA264_03545 - acylase, at 824,944 to 827,148
_03545
CA264_03550: CA264_03550 - hypothetical protein, at 827,686 to 828,303
_03550
Position (kb) 824
825
826
827
828 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 823.977 kb on + strand, within CA264_03540 at 823.977 kb on + strand, within CA264_03540 at 823.978 kb on - strand, within CA264_03540 at 823.978 kb on - strand, within CA264_03540 at 823.988 kb on - strand, within CA264_03540 at 823.990 kb on - strand, within CA264_03540 at 823.990 kb on - strand, within CA264_03540 at 823.993 kb on + strand, within CA264_03540 at 823.994 kb on - strand, within CA264_03540 at 823.994 kb on - strand, within CA264_03540 at 823.994 kb on - strand, within CA264_03540 at 824.097 kb on + strand, within CA264_03540 at 824.098 kb on - strand, within CA264_03540 at 824.098 kb on - strand, within CA264_03540 at 824.098 kb on - strand, within CA264_03540 at 824.185 kb on + strand, within CA264_03540 at 824.187 kb on + strand, within CA264_03540 at 824.228 kb on + strand, within CA264_03540 at 824.228 kb on + strand, within CA264_03540 at 824.250 kb on + strand, within CA264_03540 at 824.251 kb on - strand, within CA264_03540 at 824.287 kb on + strand, within CA264_03540 at 824.314 kb on + strand, within CA264_03540 at 824.314 kb on + strand, within CA264_03540 at 824.314 kb on + strand, within CA264_03540 at 824.315 kb on - strand, within CA264_03540 at 824.447 kb on - strand at 824.453 kb on - strand at 824.542 kb on - strand at 824.548 kb on - strand at 824.574 kb on - strand at 824.631 kb on - strand at 824.660 kb on + strand at 824.675 kb on - strand at 824.770 kb on + strand at 824.779 kb on + strand at 824.782 kb on - strand at 824.801 kb on + strand at 824.805 kb on - strand at 824.805 kb on - strand at 824.810 kb on + strand at 824.811 kb on - strand at 824.811 kb on - strand at 824.844 kb on - strand at 824.849 kb on + strand at 824.850 kb on - strand at 824.850 kb on - strand at 824.853 kb on - strand at 824.853 kb on - strand at 824.939 kb on - strand at 824.943 kb on + strand at 824.943 kb on + strand at 824.944 kb on - strand at 824.952 kb on + strand at 824.953 kb on - strand at 824.953 kb on - strand at 825.078 kb on + strand at 825.078 kb on + strand at 825.079 kb on - strand at 825.079 kb on - strand at 825.110 kb on - strand at 825.148 kb on + strand at 825.148 kb on + strand at 825.149 kb on - strand at 825.149 kb on - strand at 825.149 kb on - strand at 825.190 kb on + strand, within CA264_03545 at 825.191 kb on - strand, within CA264_03545 at 825.265 kb on + strand, within CA264_03545 at 825.266 kb on - strand, within CA264_03545 at 825.266 kb on - strand, within CA264_03545 at 825.285 kb on + strand, within CA264_03545 at 825.285 kb on + strand, within CA264_03545 at 825.286 kb on - strand, within CA264_03545 at 825.296 kb on - strand, within CA264_03545 at 825.355 kb on + strand, within CA264_03545 at 825.358 kb on + strand, within CA264_03545 at 825.359 kb on - strand, within CA264_03545 at 825.381 kb on - strand, within CA264_03545 at 825.468 kb on + strand, within CA264_03545 at 825.520 kb on - strand, within CA264_03545 at 825.524 kb on - strand, within CA264_03545 at 825.634 kb on - strand, within CA264_03545 at 825.703 kb on - strand, within CA264_03545 at 825.759 kb on + strand, within CA264_03545 at 825.759 kb on + strand, within CA264_03545 at 825.760 kb on - strand, within CA264_03545 at 825.806 kb on + strand, within CA264_03545 at 825.835 kb on + strand, within CA264_03545 at 825.836 kb on - strand, within CA264_03545 at 825.836 kb on - strand, within CA264_03545 at 825.836 kb on - strand, within CA264_03545 at 825.836 kb on - strand, within CA264_03545 at 825.884 kb on - strand, within CA264_03545 at 825.925 kb on + strand, within CA264_03545 at 825.978 kb on + strand, within CA264_03545 at 825.978 kb on + strand, within CA264_03545 at 825.978 kb on + strand, within CA264_03545 at 825.978 kb on + strand, within CA264_03545 at 825.979 kb on - strand, within CA264_03545 at 825.979 kb on - strand, within CA264_03545 at 826.057 kb on - strand, within CA264_03545 at 826.090 kb on - strand, within CA264_03545 at 826.102 kb on + strand, within CA264_03545 at 826.119 kb on + strand, within CA264_03545 at 826.161 kb on + strand, within CA264_03545 at 826.284 kb on + strand, within CA264_03545 at 826.285 kb on - strand, within CA264_03545 at 826.315 kb on + strand, within CA264_03545 at 826.316 kb on - strand, within CA264_03545 at 826.316 kb on - strand, within CA264_03545 at 826.345 kb on + strand, within CA264_03545 at 826.345 kb on + strand, within CA264_03545 at 826.346 kb on - strand, within CA264_03545 at 826.346 kb on - strand, within CA264_03545 at 826.346 kb on - strand, within CA264_03545 at 826.346 kb on - strand, within CA264_03545 at 826.346 kb on - strand, within CA264_03545 at 826.430 kb on + strand, within CA264_03545 at 826.430 kb on + strand, within CA264_03545 at 826.433 kb on + strand, within CA264_03545 at 826.434 kb on - strand, within CA264_03545 at 826.445 kb on - strand, within CA264_03545 at 826.491 kb on - strand, within CA264_03545 at 826.498 kb on + strand, within CA264_03545 at 826.564 kb on + strand, within CA264_03545 at 826.564 kb on + strand, within CA264_03545 at 826.564 kb on + strand, within CA264_03545 at 826.565 kb on - strand, within CA264_03545 at 826.575 kb on + strand, within CA264_03545 at 826.576 kb on - strand, within CA264_03545 at 826.675 kb on + strand, within CA264_03545 at 826.678 kb on + strand, within CA264_03545 at 826.680 kb on + strand, within CA264_03545 at 826.680 kb on + strand, within CA264_03545 at 826.811 kb on + strand, within CA264_03545 at 826.811 kb on + strand, within CA264_03545 at 826.811 kb on + strand, within CA264_03545 at 826.811 kb on + strand, within CA264_03545 at 826.812 kb on - strand, within CA264_03545 at 826.812 kb on - strand, within CA264_03545 at 826.812 kb on - strand, within CA264_03545 at 826.842 kb on + strand, within CA264_03545 at 826.899 kb on + strand, within CA264_03545 at 826.900 kb on - strand, within CA264_03545 at 826.900 kb on - strand, within CA264_03545 at 826.900 kb on - strand, within CA264_03545 at 826.903 kb on + strand, within CA264_03545 at 826.903 kb on + strand, within CA264_03545 at 826.903 kb on + strand, within CA264_03545 at 826.903 kb on + strand, within CA264_03545 at 826.904 kb on - strand, within CA264_03545 at 827.050 kb on + strand at 827.080 kb on + strand at 827.081 kb on - strand at 827.120 kb on - strand at 827.156 kb on + strand at 827.230 kb on + strand at 827.231 kb on - strand at 827.231 kb on - strand at 827.231 kb on - strand at 827.254 kb on + strand at 827.255 kb on - strand at 827.255 kb on - strand at 827.300 kb on - strand at 827.383 kb on + strand at 827.383 kb on + strand at 827.386 kb on - strand at 827.434 kb on + strand at 827.435 kb on - strand at 827.491 kb on - strand at 827.505 kb on - strand at 827.505 kb on - strand at 827.513 kb on + strand at 827.514 kb on - strand at 827.514 kb on - strand at 827.514 kb on - strand at 827.514 kb on - strand at 827.528 kb on + strand at 827.546 kb on - strand at 827.547 kb on + strand at 827.590 kb on - strand at 827.595 kb on - strand at 827.648 kb on - strand at 827.648 kb on - strand at 827.654 kb on + strand at 827.656 kb on + strand at 827.666 kb on + strand at 827.673 kb on + strand at 827.738 kb on - strand at 827.772 kb on + strand, within CA264_03550 at 827.780 kb on - strand, within CA264_03550 at 827.781 kb on + strand, within CA264_03550 at 827.782 kb on - strand, within CA264_03550 at 827.782 kb on - strand, within CA264_03550 at 827.810 kb on + strand, within CA264_03550 at 827.814 kb on - strand, within CA264_03550 at 827.817 kb on + strand, within CA264_03550 at 827.817 kb on + strand, within CA264_03550 at 827.818 kb on - strand, within CA264_03550 at 827.818 kb on - strand, within CA264_03550 at 827.818 kb on - strand, within CA264_03550 at 827.821 kb on - strand, within CA264_03550 at 827.830 kb on - strand, within CA264_03550 at 827.873 kb on - strand, within CA264_03550 at 827.874 kb on + strand, within CA264_03550 at 827.926 kb on - strand, within CA264_03550 at 827.943 kb on + strand, within CA264_03550 at 827.949 kb on + strand, within CA264_03550 at 827.965 kb on - strand, within CA264_03550 at 827.969 kb on - strand, within CA264_03550 at 827.969 kb on - strand, within CA264_03550 at 827.969 kb on - strand, within CA264_03550 at 827.969 kb on - strand, within CA264_03550 at 827.969 kb on - strand, within CA264_03550 at 828.003 kb on + strand, within CA264_03550 at 828.009 kb on - strand, within CA264_03550 at 828.038 kb on + strand, within CA264_03550 at 828.086 kb on - strand, within CA264_03550 at 828.144 kb on - strand, within CA264_03550 at 828.144 kb on - strand, within CA264_03550 at 828.144 kb on - strand, within CA264_03550
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 823,977 + CA264_03540 0.48 -0.6 823,977 + CA264_03540 0.48 +0.6 823,978 - CA264_03540 0.48 +1.6 823,978 - CA264_03540 0.48 -1.2 823,988 - CA264_03540 0.50 +0.6 823,990 - CA264_03540 0.50 +2.2 823,990 - CA264_03540 0.50 -1.2 823,993 + CA264_03540 0.50 -0.8 823,994 - CA264_03540 0.50 +0.1 823,994 - CA264_03540 0.50 -0.9 823,994 - CA264_03540 0.50 -2.1 824,097 + CA264_03540 0.61 +0.8 824,098 - CA264_03540 0.62 -2.2 824,098 - CA264_03540 0.62 -0.1 824,098 - CA264_03540 0.62 -1.0 824,185 + CA264_03540 0.71 -0.8 824,187 + CA264_03540 0.71 -1.9 824,228 + CA264_03540 0.76 -1.3 824,228 + CA264_03540 0.76 -0.9 824,250 + CA264_03540 0.78 -0.8 824,251 - CA264_03540 0.78 -1.0 824,287 + CA264_03540 0.82 +0.2 824,314 + CA264_03540 0.85 +0.7 824,314 + CA264_03540 0.85 +0.4 824,314 + CA264_03540 0.85 +0.2 824,315 - CA264_03540 0.85 -0.4 824,447 - -1.0 824,453 - -1.2 824,542 - -1.1 824,548 - -0.7 824,574 - +1.1 824,631 - -1.3 824,660 + -0.8 824,675 - +0.6 824,770 + -0.4 824,779 + -0.9 824,782 - -1.6 824,801 + -0.3 824,805 - -0.9 824,805 - +0.2 824,810 + -0.5 824,811 - -1.7 824,811 - -1.0 824,844 - -2.3 824,849 + -2.6 824,850 - -0.9 824,850 - -1.1 824,853 - -1.7 824,853 - -0.7 824,939 - -0.7 824,943 + -0.4 824,943 + -0.7 824,944 - -0.6 824,952 + +1.0 824,953 - -0.6 824,953 - -1.6 825,078 + +0.4 825,078 + -0.1 825,079 - -0.5 825,079 - -0.6 825,110 - -0.1 825,148 + -1.0 825,148 + +0.0 825,149 - -0.1 825,149 - -0.2 825,149 - -0.9 825,190 + CA264_03545 0.11 +2.1 825,191 - CA264_03545 0.11 -2.9 825,265 + CA264_03545 0.15 -0.2 825,266 - CA264_03545 0.15 +0.6 825,266 - CA264_03545 0.15 +1.6 825,285 + CA264_03545 0.15 +0.1 825,285 + CA264_03545 0.15 -1.2 825,286 - CA264_03545 0.16 -0.6 825,296 - CA264_03545 0.16 +0.4 825,355 + CA264_03545 0.19 -0.7 825,358 + CA264_03545 0.19 -0.2 825,359 - CA264_03545 0.19 -0.8 825,381 - CA264_03545 0.20 +0.0 825,468 + CA264_03545 0.24 -1.4 825,520 - CA264_03545 0.26 -0.0 825,524 - CA264_03545 0.26 -0.7 825,634 - CA264_03545 0.31 -1.0 825,703 - CA264_03545 0.34 -0.7 825,759 + CA264_03545 0.37 -0.7 825,759 + CA264_03545 0.37 -0.5 825,760 - CA264_03545 0.37 +2.4 825,806 + CA264_03545 0.39 +0.4 825,835 + CA264_03545 0.40 -0.8 825,836 - CA264_03545 0.40 -0.6 825,836 - CA264_03545 0.40 -0.8 825,836 - CA264_03545 0.40 +0.1 825,836 - CA264_03545 0.40 -0.8 825,884 - CA264_03545 0.43 -1.0 825,925 + CA264_03545 0.44 -0.1 825,978 + CA264_03545 0.47 -1.4 825,978 + CA264_03545 0.47 -0.7 825,978 + CA264_03545 0.47 +1.4 825,978 + CA264_03545 0.47 +1.8 825,979 - CA264_03545 0.47 -1.5 825,979 - CA264_03545 0.47 -1.7 826,057 - CA264_03545 0.50 -0.9 826,090 - CA264_03545 0.52 -0.1 826,102 + CA264_03545 0.53 +0.4 826,119 + CA264_03545 0.53 -0.6 826,161 + CA264_03545 0.55 +1.7 826,284 + CA264_03545 0.61 -1.0 826,285 - CA264_03545 0.61 -0.4 826,315 + CA264_03545 0.62 -1.0 826,316 - CA264_03545 0.62 -0.6 826,316 - CA264_03545 0.62 -1.4 826,345 + CA264_03545 0.64 +0.5 826,345 + CA264_03545 0.64 -1.8 826,346 - CA264_03545 0.64 -2.3 826,346 - CA264_03545 0.64 -0.7 826,346 - CA264_03545 0.64 -1.3 826,346 - CA264_03545 0.64 -0.5 826,346 - CA264_03545 0.64 -0.7 826,430 + CA264_03545 0.67 -1.0 826,430 + CA264_03545 0.67 +0.0 826,433 + CA264_03545 0.68 -0.3 826,434 - CA264_03545 0.68 +0.4 826,445 - CA264_03545 0.68 -0.2 826,491 - CA264_03545 0.70 +1.0 826,498 + CA264_03545 0.70 -0.7 826,564 + CA264_03545 0.73 -0.2 826,564 + CA264_03545 0.73 -0.1 826,564 + CA264_03545 0.73 +0.4 826,565 - CA264_03545 0.74 +0.1 826,575 + CA264_03545 0.74 +1.1 826,576 - CA264_03545 0.74 -0.0 826,675 + CA264_03545 0.79 -0.1 826,678 + CA264_03545 0.79 -0.7 826,680 + CA264_03545 0.79 -0.8 826,680 + CA264_03545 0.79 -0.8 826,811 + CA264_03545 0.85 +0.5 826,811 + CA264_03545 0.85 +0.8 826,811 + CA264_03545 0.85 -0.3 826,811 + CA264_03545 0.85 +0.0 826,812 - CA264_03545 0.85 -0.5 826,812 - CA264_03545 0.85 -1.7 826,812 - CA264_03545 0.85 -0.2 826,842 + CA264_03545 0.86 -0.8 826,899 + CA264_03545 0.89 +0.2 826,900 - CA264_03545 0.89 -0.5 826,900 - CA264_03545 0.89 -2.4 826,900 - CA264_03545 0.89 +1.5 826,903 + CA264_03545 0.89 -1.2 826,903 + CA264_03545 0.89 -0.4 826,903 + CA264_03545 0.89 -0.4 826,903 + CA264_03545 0.89 -0.7 826,904 - CA264_03545 0.89 -0.9 827,050 + -1.2 827,080 + -0.8 827,081 - -0.4 827,120 - -0.1 827,156 + -0.7 827,230 + +0.8 827,231 - -0.5 827,231 - -0.2 827,231 - -0.5 827,254 + -1.3 827,255 - -0.0 827,255 - -0.7 827,300 - -0.4 827,383 + -0.5 827,383 + -0.1 827,386 - +2.4 827,434 + -0.9 827,435 - -1.1 827,491 - -0.8 827,505 - -0.2 827,505 - -0.7 827,513 + -0.4 827,514 - -0.3 827,514 - -3.2 827,514 - +0.4 827,514 - +0.4 827,528 + -1.1 827,546 - -0.4 827,547 + -0.4 827,590 - -0.9 827,595 - +0.5 827,648 - -1.2 827,648 - -0.6 827,654 + -0.1 827,656 + +0.2 827,666 + -0.6 827,673 + -0.6 827,738 - -1.2 827,772 + CA264_03550 0.14 +0.4 827,780 - CA264_03550 0.15 -0.6 827,781 + CA264_03550 0.15 -0.4 827,782 - CA264_03550 0.16 +0.0 827,782 - CA264_03550 0.16 -0.7 827,810 + CA264_03550 0.20 -0.8 827,814 - CA264_03550 0.21 -0.5 827,817 + CA264_03550 0.21 -0.0 827,817 + CA264_03550 0.21 +0.0 827,818 - CA264_03550 0.21 -0.7 827,818 - CA264_03550 0.21 +1.1 827,818 - CA264_03550 0.21 -0.1 827,821 - CA264_03550 0.22 +0.1 827,830 - CA264_03550 0.23 +1.4 827,873 - CA264_03550 0.30 +0.0 827,874 + CA264_03550 0.30 -0.9 827,926 - CA264_03550 0.39 -0.8 827,943 + CA264_03550 0.42 -0.5 827,949 + CA264_03550 0.43 +0.0 827,965 - CA264_03550 0.45 -0.6 827,969 - CA264_03550 0.46 -3.1 827,969 - CA264_03550 0.46 -0.6 827,969 - CA264_03550 0.46 +0.4 827,969 - CA264_03550 0.46 -1.0 827,969 - CA264_03550 0.46 -2.3 828,003 + CA264_03550 0.51 -0.3 828,009 - CA264_03550 0.52 -0.6 828,038 + CA264_03550 0.57 +0.0 828,086 - CA264_03550 0.65 -0.7 828,144 - CA264_03550 0.74 -1.5 828,144 - CA264_03550 0.74 -0.2 828,144 - CA264_03550 0.74 -0.5
Or see this region's nucleotide sequence