Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03480 and CA264_03485 are separated by 249 nucleotides CA264_03485 and CA264_03490 are separated by 256 nucleotides CA264_03490 and CA264_03495 are separated by 256 nucleotides
CA264_03480: CA264_03480 - hypothetical protein, at 811,442 to 812,173
_03480
CA264_03485: CA264_03485 - dodecin, at 812,423 to 812,632
_03485
CA264_03490: CA264_03490 - hypothetical protein, at 812,889 to 813,335
_03490
CA264_03495: CA264_03495 - tRNA pseudouridine(38-40) synthase TruA, at 813,592 to 814,401
_03495
Position (kb) 812
813
814 Strain fitness (log2 ratio) -2
-1
0
1 at 811.925 kb on - strand, within CA264_03480 at 811.983 kb on + strand, within CA264_03480 at 811.983 kb on + strand, within CA264_03480 at 811.983 kb on + strand, within CA264_03480 at 811.984 kb on - strand, within CA264_03480 at 811.984 kb on - strand, within CA264_03480 at 811.989 kb on - strand, within CA264_03480 at 812.024 kb on - strand, within CA264_03480 at 812.024 kb on - strand, within CA264_03480 at 812.041 kb on - strand, within CA264_03480 at 812.067 kb on - strand, within CA264_03480 at 812.161 kb on + strand at 812.161 kb on + strand at 812.173 kb on + strand at 812.174 kb on - strand at 812.184 kb on + strand at 812.184 kb on + strand at 812.185 kb on - strand at 812.186 kb on + strand at 812.186 kb on + strand at 812.186 kb on + strand at 812.186 kb on + strand at 812.187 kb on - strand at 812.187 kb on - strand at 812.211 kb on - strand at 812.217 kb on - strand at 812.219 kb on + strand at 812.277 kb on + strand at 812.278 kb on - strand at 812.281 kb on - strand at 812.316 kb on + strand at 812.335 kb on + strand at 812.344 kb on - strand at 812.354 kb on - strand at 812.425 kb on - strand at 812.438 kb on + strand at 812.512 kb on + strand, within CA264_03485 at 812.528 kb on - strand, within CA264_03485 at 812.613 kb on - strand at 812.613 kb on - strand at 812.616 kb on - strand at 812.616 kb on - strand at 812.632 kb on + strand at 812.633 kb on - strand at 812.641 kb on + strand at 812.641 kb on + strand at 812.755 kb on + strand at 812.756 kb on - strand at 812.756 kb on - strand at 812.756 kb on - strand at 812.756 kb on - strand at 812.760 kb on + strand at 812.761 kb on - strand at 812.763 kb on - strand at 812.772 kb on - strand at 812.789 kb on + strand at 812.789 kb on + strand at 812.789 kb on + strand at 812.789 kb on + strand at 812.790 kb on - strand at 812.852 kb on - strand at 813.022 kb on + strand, within CA264_03490 at 813.118 kb on + strand, within CA264_03490 at 813.218 kb on + strand, within CA264_03490 at 813.219 kb on - strand, within CA264_03490 at 813.219 kb on - strand, within CA264_03490 at 813.263 kb on + strand, within CA264_03490 at 813.264 kb on - strand, within CA264_03490 at 813.275 kb on + strand, within CA264_03490 at 813.281 kb on + strand, within CA264_03490 at 813.281 kb on + strand, within CA264_03490 at 813.335 kb on + strand at 813.335 kb on + strand at 813.335 kb on + strand at 813.336 kb on - strand at 813.339 kb on + strand at 813.340 kb on - strand at 813.340 kb on - strand at 813.412 kb on + strand at 813.414 kb on + strand at 813.414 kb on + strand at 813.415 kb on - strand at 813.429 kb on + strand at 813.430 kb on - strand at 813.430 kb on - strand at 813.430 kb on - strand at 813.461 kb on + strand at 813.462 kb on - strand at 813.462 kb on - strand at 813.564 kb on + strand at 813.619 kb on - strand at 813.675 kb on - strand, within CA264_03495 at 813.689 kb on - strand, within CA264_03495 at 813.692 kb on + strand, within CA264_03495 at 813.693 kb on - strand, within CA264_03495 at 813.805 kb on + strand, within CA264_03495 at 813.805 kb on + strand, within CA264_03495 at 813.806 kb on - strand, within CA264_03495 at 813.811 kb on + strand, within CA264_03495 at 813.812 kb on - strand, within CA264_03495 at 813.847 kb on + strand, within CA264_03495 at 813.902 kb on - strand, within CA264_03495 at 813.902 kb on - strand, within CA264_03495 at 813.902 kb on - strand, within CA264_03495 at 813.953 kb on + strand, within CA264_03495 at 814.023 kb on - strand, within CA264_03495 at 814.080 kb on - strand, within CA264_03495 at 814.185 kb on + strand, within CA264_03495 at 814.273 kb on - strand, within CA264_03495 at 814.273 kb on - strand, within CA264_03495 at 814.288 kb on - strand, within CA264_03495
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 811,925 - CA264_03480 0.66 -0.1 811,983 + CA264_03480 0.74 -0.7 811,983 + CA264_03480 0.74 -1.2 811,983 + CA264_03480 0.74 -0.3 811,984 - CA264_03480 0.74 -1.1 811,984 - CA264_03480 0.74 -0.1 811,989 - CA264_03480 0.75 -0.7 812,024 - CA264_03480 0.80 -0.8 812,024 - CA264_03480 0.80 +1.3 812,041 - CA264_03480 0.82 +0.1 812,067 - CA264_03480 0.85 +0.3 812,161 + -0.7 812,161 + +0.1 812,173 + +0.6 812,174 - -1.2 812,184 + +0.9 812,184 + +0.6 812,185 - -0.2 812,186 + -0.2 812,186 + -0.9 812,186 + +0.4 812,186 + +1.0 812,187 - -0.5 812,187 - +0.0 812,211 - -0.8 812,217 - -0.3 812,219 + -0.6 812,277 + -0.1 812,278 - -0.1 812,281 - -0.3 812,316 + -0.3 812,335 + -1.1 812,344 - -0.7 812,354 - -0.1 812,425 - +0.3 812,438 + -0.3 812,512 + CA264_03485 0.42 -0.8 812,528 - CA264_03485 0.50 +0.2 812,613 - -0.4 812,613 - +1.3 812,616 - +0.9 812,616 - +0.7 812,632 + +0.2 812,633 - -1.8 812,641 + -0.4 812,641 + -0.9 812,755 + -0.8 812,756 - +0.3 812,756 - +0.7 812,756 - +0.6 812,756 - +0.2 812,760 + -1.4 812,761 - +0.2 812,763 - +1.2 812,772 - -0.0 812,789 + -0.2 812,789 + -0.7 812,789 + -0.8 812,789 + -1.1 812,790 - +0.5 812,852 - +1.6 813,022 + CA264_03490 0.30 -0.5 813,118 + CA264_03490 0.51 -0.1 813,218 + CA264_03490 0.74 +0.1 813,219 - CA264_03490 0.74 +0.5 813,219 - CA264_03490 0.74 +0.2 813,263 + CA264_03490 0.84 +0.4 813,264 - CA264_03490 0.84 +0.4 813,275 + CA264_03490 0.86 +0.1 813,281 + CA264_03490 0.88 +0.5 813,281 + CA264_03490 0.88 +0.4 813,335 + +1.1 813,335 + +0.3 813,335 + +0.7 813,336 - -1.9 813,339 + +0.4 813,340 - -2.0 813,340 - +0.9 813,412 + +0.7 813,414 + -1.0 813,414 + +0.7 813,415 - -1.7 813,429 + -0.1 813,430 - -1.4 813,430 - -0.7 813,430 - -2.3 813,461 + -0.2 813,462 - -1.5 813,462 - -1.7 813,564 + -0.5 813,619 - -1.3 813,675 - CA264_03495 0.10 -1.4 813,689 - CA264_03495 0.12 -0.8 813,692 + CA264_03495 0.12 +0.1 813,693 - CA264_03495 0.12 -1.1 813,805 + CA264_03495 0.26 -0.1 813,805 + CA264_03495 0.26 -0.3 813,806 - CA264_03495 0.26 -0.6 813,811 + CA264_03495 0.27 +0.6 813,812 - CA264_03495 0.27 -1.5 813,847 + CA264_03495 0.31 -0.4 813,902 - CA264_03495 0.38 -0.8 813,902 - CA264_03495 0.38 -2.0 813,902 - CA264_03495 0.38 -1.0 813,953 + CA264_03495 0.45 -0.3 814,023 - CA264_03495 0.53 +0.8 814,080 - CA264_03495 0.60 +0.4 814,185 + CA264_03495 0.73 +0.5 814,273 - CA264_03495 0.84 +0.8 814,273 - CA264_03495 0.84 +0.6 814,288 - CA264_03495 0.86 -0.2
Or see this region's nucleotide sequence