Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03360

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03355 and CA264_03360 are separated by 131 nucleotidesCA264_03360 and CA264_03365 are separated by 196 nucleotidesCA264_03365 and CA264_03370 are separated by 10 nucleotidesCA264_03370 and CA264_03375 are separated by 149 nucleotides CA264_03355: CA264_03355 - VWA domain-containing protein, at 785,279 to 787,144 _03355 CA264_03360: CA264_03360 - hypothetical protein, at 787,276 to 788,832 _03360 CA264_03365: CA264_03365 - hypothetical protein, at 789,029 to 789,229 _03365 CA264_03370: CA264_03370 - hypothetical protein, at 789,240 to 789,671 _03370 CA264_03375: CA264_03375 - hypothetical protein, at 789,821 to 790,390 _03375 Position (kb) 787 788 789Strain fitness (log2 ratio) -2 -1 0 1 2at 786.284 kb on - strand, within CA264_03355at 786.284 kb on - strand, within CA264_03355at 786.285 kb on + strand, within CA264_03355at 786.286 kb on - strand, within CA264_03355at 786.286 kb on - strand, within CA264_03355at 786.286 kb on - strand, within CA264_03355at 786.319 kb on + strand, within CA264_03355at 786.319 kb on + strand, within CA264_03355at 786.320 kb on - strand, within CA264_03355at 786.432 kb on + strand, within CA264_03355at 786.432 kb on + strand, within CA264_03355at 786.516 kb on - strand, within CA264_03355at 786.516 kb on - strand, within CA264_03355at 786.516 kb on - strand, within CA264_03355at 786.521 kb on + strand, within CA264_03355at 786.522 kb on - strand, within CA264_03355at 786.522 kb on - strand, within CA264_03355at 786.529 kb on + strand, within CA264_03355at 786.529 kb on + strand, within CA264_03355at 786.583 kb on + strand, within CA264_03355at 786.634 kb on - strand, within CA264_03355at 786.689 kb on - strand, within CA264_03355at 786.730 kb on + strand, within CA264_03355at 786.730 kb on + strand, within CA264_03355at 786.872 kb on + strand, within CA264_03355at 786.873 kb on - strand, within CA264_03355at 786.892 kb on + strand, within CA264_03355at 787.015 kb on + strandat 787.031 kb on + strandat 787.210 kb on + strandat 787.229 kb on - strandat 787.235 kb on + strandat 787.235 kb on + strandat 787.235 kb on + strandat 787.235 kb on + strandat 787.388 kb on - strandat 787.449 kb on - strand, within CA264_03360at 787.459 kb on + strand, within CA264_03360at 787.460 kb on - strand, within CA264_03360at 787.509 kb on + strand, within CA264_03360at 787.510 kb on - strand, within CA264_03360at 787.547 kb on - strand, within CA264_03360at 787.547 kb on - strand, within CA264_03360at 787.641 kb on - strand, within CA264_03360at 787.641 kb on - strand, within CA264_03360at 787.641 kb on - strand, within CA264_03360at 787.641 kb on - strand, within CA264_03360at 787.674 kb on + strand, within CA264_03360at 787.690 kb on + strand, within CA264_03360at 787.692 kb on + strand, within CA264_03360at 787.745 kb on - strand, within CA264_03360at 787.784 kb on + strand, within CA264_03360at 787.784 kb on + strand, within CA264_03360at 787.784 kb on + strand, within CA264_03360at 787.785 kb on - strand, within CA264_03360at 787.785 kb on - strand, within CA264_03360at 787.785 kb on - strand, within CA264_03360at 787.785 kb on - strand, within CA264_03360at 787.785 kb on - strand, within CA264_03360at 787.973 kb on - strand, within CA264_03360at 787.992 kb on - strand, within CA264_03360at 788.103 kb on + strand, within CA264_03360at 788.103 kb on + strand, within CA264_03360at 788.103 kb on + strand, within CA264_03360at 788.104 kb on - strand, within CA264_03360at 788.106 kb on - strand, within CA264_03360at 788.113 kb on + strand, within CA264_03360at 788.113 kb on + strand, within CA264_03360at 788.113 kb on + strand, within CA264_03360at 788.114 kb on - strand, within CA264_03360at 788.114 kb on - strand, within CA264_03360at 788.114 kb on - strand, within CA264_03360at 788.147 kb on + strand, within CA264_03360at 788.147 kb on + strand, within CA264_03360at 788.184 kb on + strand, within CA264_03360at 788.388 kb on - strand, within CA264_03360at 788.438 kb on + strand, within CA264_03360at 788.439 kb on - strand, within CA264_03360at 788.511 kb on + strand, within CA264_03360at 788.567 kb on + strand, within CA264_03360at 788.579 kb on + strand, within CA264_03360at 788.729 kb on + strandat 788.821 kb on + strandat 788.843 kb on + strandat 788.874 kb on + strandat 788.918 kb on - strandat 788.918 kb on - strandat 788.979 kb on - strandat 788.997 kb on + strandat 789.012 kb on + strandat 789.015 kb on - strandat 789.027 kb on + strandat 789.161 kb on + strand, within CA264_03365at 789.193 kb on + strand, within CA264_03365at 789.197 kb on + strand, within CA264_03365at 789.228 kb on - strandat 789.241 kb on + strandat 789.305 kb on + strand, within CA264_03370at 789.305 kb on + strand, within CA264_03370at 789.305 kb on + strand, within CA264_03370at 789.333 kb on - strand, within CA264_03370at 789.335 kb on - strand, within CA264_03370at 789.337 kb on + strand, within CA264_03370at 789.338 kb on - strand, within CA264_03370at 789.338 kb on - strand, within CA264_03370at 789.370 kb on + strand, within CA264_03370at 789.370 kb on + strand, within CA264_03370at 789.377 kb on - strand, within CA264_03370at 789.583 kb on + strand, within CA264_03370at 789.583 kb on + strand, within CA264_03370at 789.588 kb on + strand, within CA264_03370at 789.589 kb on - strand, within CA264_03370at 789.589 kb on - strand, within CA264_03370at 789.671 kb on + strandat 789.684 kb on + strandat 789.685 kb on - strandat 789.688 kb on + strandat 789.688 kb on + strandat 789.688 kb on + strandat 789.688 kb on + strandat 789.688 kb on + strandat 789.688 kb on + strandat 789.689 kb on - strandat 789.689 kb on - strandat 789.689 kb on - strandat 789.689 kb on - strandat 789.689 kb on - strandat 789.689 kb on - strandat 789.689 kb on - strandat 789.719 kb on - strandat 789.753 kb on - strandat 789.769 kb on + strandat 789.770 kb on - strandat 789.809 kb on + strandat 789.809 kb on + strandat 789.809 kb on + strandat 789.810 kb on - strandat 789.811 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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786,284 - CA264_03355 0.54 +0.6
786,284 - CA264_03355 0.54 -2.3
786,285 + CA264_03355 0.54 +1.0
786,286 - CA264_03355 0.54 -0.2
786,286 - CA264_03355 0.54 -0.6
786,286 - CA264_03355 0.54 -0.2
786,319 + CA264_03355 0.56 -1.0
786,319 + CA264_03355 0.56 -0.9
786,320 - CA264_03355 0.56 -0.2
786,432 + CA264_03355 0.62 +0.7
786,432 + CA264_03355 0.62 +0.6
786,516 - CA264_03355 0.66 -1.1
786,516 - CA264_03355 0.66 -0.1
786,516 - CA264_03355 0.66 -0.3
786,521 + CA264_03355 0.67 +1.2
786,522 - CA264_03355 0.67 -0.1
786,522 - CA264_03355 0.67 -0.2
786,529 + CA264_03355 0.67 +0.2
786,529 + CA264_03355 0.67 +1.6
786,583 + CA264_03355 0.70 +0.4
786,634 - CA264_03355 0.73 +0.0
786,689 - CA264_03355 0.76 +0.5
786,730 + CA264_03355 0.78 +0.8
786,730 + CA264_03355 0.78 -0.2
786,872 + CA264_03355 0.85 +1.4
786,873 - CA264_03355 0.85 -0.1
786,892 + CA264_03355 0.86 +0.1
787,015 + +0.8
787,031 + -0.1
787,210 + +0.3
787,229 - +0.8
787,235 + -0.7
787,235 + +0.0
787,235 + -0.0
787,235 + +1.4
787,388 - +1.0
787,449 - CA264_03360 0.11 +0.6
787,459 + CA264_03360 0.12 -0.2
787,460 - CA264_03360 0.12 +1.2
787,509 + CA264_03360 0.15 +1.2
787,510 - CA264_03360 0.15 +1.2
787,547 - CA264_03360 0.17 +0.3
787,547 - CA264_03360 0.17 +1.0
787,641 - CA264_03360 0.23 +1.2
787,641 - CA264_03360 0.23 +1.5
787,641 - CA264_03360 0.23 +1.1
787,641 - CA264_03360 0.23 +1.1
787,674 + CA264_03360 0.26 +1.1
787,690 + CA264_03360 0.27 +1.1
787,692 + CA264_03360 0.27 +0.9
787,745 - CA264_03360 0.30 +0.6
787,784 + CA264_03360 0.33 +1.1
787,784 + CA264_03360 0.33 +1.2
787,784 + CA264_03360 0.33 +0.8
787,785 - CA264_03360 0.33 +0.4
787,785 - CA264_03360 0.33 +1.0
787,785 - CA264_03360 0.33 +0.9
787,785 - CA264_03360 0.33 +1.3
787,785 - CA264_03360 0.33 +1.0
787,973 - CA264_03360 0.45 -0.4
787,992 - CA264_03360 0.46 +0.7
788,103 + CA264_03360 0.53 +1.0
788,103 + CA264_03360 0.53 +1.6
788,103 + CA264_03360 0.53 -0.2
788,104 - CA264_03360 0.53 +0.1
788,106 - CA264_03360 0.53 +2.1
788,113 + CA264_03360 0.54 -0.3
788,113 + CA264_03360 0.54 +1.2
788,113 + CA264_03360 0.54 +1.1
788,114 - CA264_03360 0.54 +0.9
788,114 - CA264_03360 0.54 +0.4
788,114 - CA264_03360 0.54 +1.2
788,147 + CA264_03360 0.56 +1.0
788,147 + CA264_03360 0.56 +0.6
788,184 + CA264_03360 0.58 +0.9
788,388 - CA264_03360 0.71 +0.0
788,438 + CA264_03360 0.75 +0.8
788,439 - CA264_03360 0.75 +0.7
788,511 + CA264_03360 0.79 +1.5
788,567 + CA264_03360 0.83 +1.6
788,579 + CA264_03360 0.84 +1.0
788,729 + +0.9
788,821 + +1.1
788,843 + -0.0
788,874 + -1.5
788,918 - +0.2
788,918 - +0.0
788,979 - +0.4
788,997 + -0.3
789,012 + -0.6
789,015 - +0.4
789,027 + -1.2
789,161 + CA264_03365 0.66 +1.0
789,193 + CA264_03365 0.82 +0.0
789,197 + CA264_03365 0.84 -0.1
789,228 - +0.7
789,241 + -0.4
789,305 + CA264_03370 0.15 +0.1
789,305 + CA264_03370 0.15 +0.3
789,305 + CA264_03370 0.15 +0.7
789,333 - CA264_03370 0.22 +2.5
789,335 - CA264_03370 0.22 +1.2
789,337 + CA264_03370 0.22 +0.8
789,338 - CA264_03370 0.23 +1.1
789,338 - CA264_03370 0.23 +0.8
789,370 + CA264_03370 0.30 -0.7
789,370 + CA264_03370 0.30 -0.5
789,377 - CA264_03370 0.32 +0.2
789,583 + CA264_03370 0.79 +0.9
789,583 + CA264_03370 0.79 -0.5
789,588 + CA264_03370 0.81 +1.1
789,589 - CA264_03370 0.81 +0.4
789,589 - CA264_03370 0.81 +0.9
789,671 + +1.1
789,684 + -0.7
789,685 - -0.1
789,688 + -0.8
789,688 + +0.1
789,688 + +0.1
789,688 + -0.4
789,688 + -0.1
789,688 + -1.1
789,689 - +0.6
789,689 - -0.5
789,689 - +0.3
789,689 - +0.2
789,689 - +0.7
789,689 - -1.5
789,689 - +0.3
789,719 - -0.7
789,753 - +0.2
789,769 + -0.1
789,770 - +0.2
789,809 + -0.9
789,809 + -0.3
789,809 + -0.5
789,810 - -1.0
789,811 + +0.4

Or see this region's nucleotide sequence