Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03210

Experiment: m.b. A22 0.04 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_03205 and CA264_03210 are separated by 237 nucleotidesCA264_03210 and CA264_03215 are separated by 163 nucleotides CA264_03205: CA264_03205 - hypothetical protein, at 751,136 to 752,185 _03205 CA264_03210: CA264_03210 - glycogen debranching protein, at 752,423 to 755,125 _03210 CA264_03215: CA264_03215 - TonB-dependent receptor, at 755,289 to 757,721 _03215 Position (kb) 752 753 754 755 756Strain fitness (log2 ratio) -2 -1 0 1 2at 751.481 kb on + strand, within CA264_03205at 751.482 kb on - strand, within CA264_03205at 751.521 kb on + strand, within CA264_03205at 751.708 kb on - strand, within CA264_03205at 751.737 kb on + strand, within CA264_03205at 751.737 kb on + strand, within CA264_03205at 751.738 kb on - strand, within CA264_03205at 751.740 kb on - strand, within CA264_03205at 751.740 kb on - strand, within CA264_03205at 751.794 kb on + strand, within CA264_03205at 751.893 kb on + strand, within CA264_03205at 751.893 kb on + strand, within CA264_03205at 751.894 kb on - strand, within CA264_03205at 751.895 kb on + strand, within CA264_03205at 751.896 kb on - strand, within CA264_03205at 752.010 kb on + strand, within CA264_03205at 752.141 kb on + strandat 752.180 kb on - strandat 752.191 kb on + strandat 752.198 kb on + strandat 752.199 kb on - strandat 752.395 kb on - strandat 752.408 kb on + strandat 752.413 kb on + strandat 752.449 kb on + strandat 752.450 kb on - strandat 752.524 kb on + strandat 752.525 kb on - strandat 752.543 kb on + strandat 752.544 kb on - strandat 752.548 kb on + strandat 752.548 kb on + strandat 752.548 kb on + strandat 752.549 kb on - strandat 752.549 kb on - strandat 752.549 kb on - strandat 752.549 kb on - strandat 752.617 kb on + strandat 752.618 kb on - strandat 752.621 kb on + strandat 752.623 kb on + strandat 752.623 kb on + strandat 752.807 kb on + strand, within CA264_03210at 752.807 kb on + strand, within CA264_03210at 752.808 kb on - strand, within CA264_03210at 752.846 kb on - strand, within CA264_03210at 752.937 kb on - strand, within CA264_03210at 753.006 kb on + strand, within CA264_03210at 753.028 kb on + strand, within CA264_03210at 753.029 kb on - strand, within CA264_03210at 753.051 kb on + strand, within CA264_03210at 753.052 kb on - strand, within CA264_03210at 753.126 kb on - strand, within CA264_03210at 753.138 kb on - strand, within CA264_03210at 753.158 kb on + strand, within CA264_03210at 753.159 kb on - strand, within CA264_03210at 753.258 kb on - strand, within CA264_03210at 753.265 kb on + strand, within CA264_03210at 753.306 kb on - strand, within CA264_03210at 753.417 kb on + strand, within CA264_03210at 753.417 kb on + strand, within CA264_03210at 753.420 kb on - strand, within CA264_03210at 753.420 kb on - strand, within CA264_03210at 753.420 kb on - strand, within CA264_03210at 753.455 kb on - strand, within CA264_03210at 753.503 kb on + strand, within CA264_03210at 753.503 kb on + strand, within CA264_03210at 753.596 kb on + strand, within CA264_03210at 753.597 kb on - strand, within CA264_03210at 753.698 kb on + strand, within CA264_03210at 753.698 kb on + strand, within CA264_03210at 753.700 kb on + strand, within CA264_03210at 753.730 kb on + strand, within CA264_03210at 753.731 kb on - strand, within CA264_03210at 753.732 kb on + strand, within CA264_03210at 753.732 kb on + strand, within CA264_03210at 753.732 kb on + strand, within CA264_03210at 753.768 kb on - strand, within CA264_03210at 753.782 kb on + strand, within CA264_03210at 753.844 kb on - strand, within CA264_03210at 753.923 kb on - strand, within CA264_03210at 754.116 kb on - strand, within CA264_03210at 754.141 kb on + strand, within CA264_03210at 754.181 kb on + strand, within CA264_03210at 754.181 kb on + strand, within CA264_03210at 754.182 kb on - strand, within CA264_03210at 754.182 kb on - strand, within CA264_03210at 754.189 kb on - strand, within CA264_03210at 754.277 kb on + strand, within CA264_03210at 754.277 kb on + strand, within CA264_03210at 754.284 kb on - strand, within CA264_03210at 754.300 kb on + strand, within CA264_03210at 754.300 kb on + strand, within CA264_03210at 754.332 kb on + strand, within CA264_03210at 754.333 kb on - strand, within CA264_03210at 754.342 kb on + strand, within CA264_03210at 754.343 kb on - strand, within CA264_03210at 754.346 kb on - strand, within CA264_03210at 754.346 kb on - strand, within CA264_03210at 754.346 kb on - strand, within CA264_03210at 754.413 kb on + strand, within CA264_03210at 754.493 kb on + strand, within CA264_03210at 754.495 kb on + strand, within CA264_03210at 754.495 kb on + strand, within CA264_03210at 754.496 kb on - strand, within CA264_03210at 754.496 kb on - strand, within CA264_03210at 754.613 kb on + strand, within CA264_03210at 754.677 kb on + strand, within CA264_03210at 754.678 kb on - strand, within CA264_03210at 754.710 kb on - strand, within CA264_03210at 754.710 kb on - strand, within CA264_03210at 754.819 kb on - strand, within CA264_03210at 754.841 kb on + strand, within CA264_03210at 754.990 kb on + strandat 754.991 kb on - strandat 755.094 kb on + strandat 755.094 kb on + strandat 755.095 kb on - strandat 755.095 kb on - strandat 755.099 kb on + strandat 755.099 kb on + strandat 755.100 kb on - strandat 755.100 kb on - strandat 755.101 kb on + strandat 755.102 kb on - strandat 755.102 kb on - strandat 755.102 kb on - strandat 755.102 kb on - strandat 755.123 kb on + strandat 755.123 kb on + strandat 755.127 kb on + strandat 755.127 kb on + strandat 755.127 kb on + strandat 755.128 kb on - strandat 755.130 kb on - strandat 755.130 kb on - strandat 755.134 kb on - strandat 755.134 kb on - strandat 755.134 kb on - strandat 755.181 kb on + strandat 755.188 kb on + strandat 755.189 kb on - strandat 755.193 kb on + strandat 755.217 kb on - strandat 755.270 kb on + strandat 755.277 kb on - strandat 755.277 kb on - strandat 755.277 kb on - strandat 755.279 kb on + strandat 755.287 kb on + strandat 755.328 kb on - strandat 755.469 kb on - strandat 755.505 kb on - strandat 755.505 kb on - strandat 755.514 kb on - strandat 755.563 kb on + strand, within CA264_03215at 755.563 kb on + strand, within CA264_03215at 755.564 kb on - strand, within CA264_03215at 755.564 kb on - strand, within CA264_03215at 755.573 kb on - strand, within CA264_03215at 755.590 kb on + strand, within CA264_03215at 755.591 kb on - strand, within CA264_03215at 755.613 kb on + strand, within CA264_03215at 755.716 kb on + strand, within CA264_03215at 755.856 kb on + strand, within CA264_03215at 755.870 kb on - strand, within CA264_03215at 755.870 kb on - strand, within CA264_03215at 755.947 kb on + strand, within CA264_03215at 755.948 kb on - strand, within CA264_03215at 755.948 kb on - strand, within CA264_03215at 755.987 kb on - strand, within CA264_03215at 755.998 kb on + strand, within CA264_03215at 756.029 kb on - strand, within CA264_03215at 756.053 kb on - strand, within CA264_03215at 756.059 kb on - strand, within CA264_03215at 756.070 kb on + strand, within CA264_03215at 756.082 kb on - strand, within CA264_03215

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
remove
751,481 + CA264_03205 0.33 +1.4
751,482 - CA264_03205 0.33 -0.9
751,521 + CA264_03205 0.37 -1.3
751,708 - CA264_03205 0.54 -1.7
751,737 + CA264_03205 0.57 +1.0
751,737 + CA264_03205 0.57 +0.2
751,738 - CA264_03205 0.57 +0.5
751,740 - CA264_03205 0.58 +0.2
751,740 - CA264_03205 0.58 +0.4
751,794 + CA264_03205 0.63 -0.1
751,893 + CA264_03205 0.72 +0.0
751,893 + CA264_03205 0.72 +0.2
751,894 - CA264_03205 0.72 -0.3
751,895 + CA264_03205 0.72 +0.1
751,896 - CA264_03205 0.72 +0.4
752,010 + CA264_03205 0.83 +0.3
752,141 + +0.1
752,180 - -0.9
752,191 + +1.3
752,198 + +0.0
752,199 - +0.5
752,395 - -0.8
752,408 + -0.5
752,413 + +0.1
752,449 + -0.2
752,450 - +0.5
752,524 + -0.2
752,525 - +0.1
752,543 + +0.2
752,544 - +0.4
752,548 + +1.3
752,548 + +0.7
752,548 + -0.2
752,549 - +0.2
752,549 - +1.0
752,549 - +1.8
752,549 - +0.5
752,617 + -0.7
752,618 - +0.4
752,621 + +0.2
752,623 + +1.9
752,623 + +0.4
752,807 + CA264_03210 0.14 -0.8
752,807 + CA264_03210 0.14 +0.1
752,808 - CA264_03210 0.14 -0.8
752,846 - CA264_03210 0.16 -0.5
752,937 - CA264_03210 0.19 +0.7
753,006 + CA264_03210 0.22 +0.5
753,028 + CA264_03210 0.22 -0.1
753,029 - CA264_03210 0.22 +0.4
753,051 + CA264_03210 0.23 +0.0
753,052 - CA264_03210 0.23 +0.4
753,126 - CA264_03210 0.26 +0.2
753,138 - CA264_03210 0.26 +0.7
753,158 + CA264_03210 0.27 -0.7
753,159 - CA264_03210 0.27 +0.9
753,258 - CA264_03210 0.31 +0.3
753,265 + CA264_03210 0.31 -0.3
753,306 - CA264_03210 0.33 -0.0
753,417 + CA264_03210 0.37 +0.7
753,417 + CA264_03210 0.37 -0.7
753,420 - CA264_03210 0.37 +1.1
753,420 - CA264_03210 0.37 -0.1
753,420 - CA264_03210 0.37 +0.5
753,455 - CA264_03210 0.38 -0.4
753,503 + CA264_03210 0.40 +0.7
753,503 + CA264_03210 0.40 +0.8
753,596 + CA264_03210 0.43 +0.1
753,597 - CA264_03210 0.43 +0.4
753,698 + CA264_03210 0.47 +0.1
753,698 + CA264_03210 0.47 -0.2
753,700 + CA264_03210 0.47 -0.4
753,730 + CA264_03210 0.48 +0.1
753,731 - CA264_03210 0.48 -0.0
753,732 + CA264_03210 0.48 +0.7
753,732 + CA264_03210 0.48 -0.1
753,732 + CA264_03210 0.48 -0.8
753,768 - CA264_03210 0.50 -0.5
753,782 + CA264_03210 0.50 -0.2
753,844 - CA264_03210 0.53 +0.6
753,923 - CA264_03210 0.55 -0.5
754,116 - CA264_03210 0.63 -0.4
754,141 + CA264_03210 0.64 -0.7
754,181 + CA264_03210 0.65 +0.8
754,181 + CA264_03210 0.65 -1.3
754,182 - CA264_03210 0.65 -0.3
754,182 - CA264_03210 0.65 -1.9
754,189 - CA264_03210 0.65 -0.6
754,277 + CA264_03210 0.69 -0.2
754,277 + CA264_03210 0.69 -0.5
754,284 - CA264_03210 0.69 -0.2
754,300 + CA264_03210 0.69 +0.2
754,300 + CA264_03210 0.69 +1.1
754,332 + CA264_03210 0.71 +0.5
754,333 - CA264_03210 0.71 +0.4
754,342 + CA264_03210 0.71 +0.3
754,343 - CA264_03210 0.71 -0.7
754,346 - CA264_03210 0.71 -0.6
754,346 - CA264_03210 0.71 +0.5
754,346 - CA264_03210 0.71 -0.1
754,413 + CA264_03210 0.74 -0.3
754,493 + CA264_03210 0.77 +0.2
754,495 + CA264_03210 0.77 -0.2
754,495 + CA264_03210 0.77 -0.9
754,496 - CA264_03210 0.77 -0.0
754,496 - CA264_03210 0.77 -1.0
754,613 + CA264_03210 0.81 +0.7
754,677 + CA264_03210 0.83 -0.1
754,678 - CA264_03210 0.83 -0.9
754,710 - CA264_03210 0.85 +0.0
754,710 - CA264_03210 0.85 +0.7
754,819 - CA264_03210 0.89 +0.7
754,841 + CA264_03210 0.89 -0.2
754,990 + -0.0
754,991 - -1.4
755,094 + +0.3
755,094 + -0.4
755,095 - -0.4
755,095 - -1.2
755,099 + -0.4
755,099 + +1.3
755,100 - +0.0
755,100 - -0.6
755,101 + +1.0
755,102 - +0.2
755,102 - -0.3
755,102 - -1.2
755,102 - -0.2
755,123 + -0.1
755,123 + +0.3
755,127 + -1.6
755,127 + +1.1
755,127 + +0.2
755,128 - -0.5
755,130 - -1.6
755,130 - +0.6
755,134 - +0.6
755,134 - +0.3
755,134 - -0.2
755,181 + +0.5
755,188 + +0.3
755,189 - +0.3
755,193 + +0.8
755,217 - +1.0
755,270 + -0.4
755,277 - +0.8
755,277 - +0.6
755,277 - +0.7
755,279 + -0.2
755,287 + -0.9
755,328 - +0.7
755,469 - +1.3
755,505 - +0.7
755,505 - -0.3
755,514 - +0.3
755,563 + CA264_03215 0.11 -0.1
755,563 + CA264_03215 0.11 -0.3
755,564 - CA264_03215 0.11 +0.6
755,564 - CA264_03215 0.11 +0.2
755,573 - CA264_03215 0.12 +1.6
755,590 + CA264_03215 0.12 -0.0
755,591 - CA264_03215 0.12 +0.2
755,613 + CA264_03215 0.13 +0.0
755,716 + CA264_03215 0.18 +1.0
755,856 + CA264_03215 0.23 +0.2
755,870 - CA264_03215 0.24 -0.1
755,870 - CA264_03215 0.24 +0.5
755,947 + CA264_03215 0.27 -0.5
755,948 - CA264_03215 0.27 +0.1
755,948 - CA264_03215 0.27 -0.0
755,987 - CA264_03215 0.29 -0.5
755,998 + CA264_03215 0.29 -0.5
756,029 - CA264_03215 0.30 -0.6
756,053 - CA264_03215 0.31 +0.1
756,059 - CA264_03215 0.32 +0.0
756,070 + CA264_03215 0.32 -0.4
756,082 - CA264_03215 0.33 +0.9

Or see this region's nucleotide sequence