Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03105 and CA264_03110 are separated by 149 nucleotides CA264_03110 and CA264_03115 are separated by 68 nucleotides CA264_03115 and CA264_03120 are separated by 152 nucleotides
CA264_03105: CA264_03105 - T9SS C-terminal target domain-containing protein, at 724,725 to 726,305
_03105
CA264_03110: CA264_03110 - transporter, at 726,455 to 727,366
_03110
CA264_03115: CA264_03115 - hypothetical protein, at 727,435 to 728,061
_03115
CA264_03120: CA264_03120 - protoporphyrinogen IX oxidase, at 728,214 to 728,750
_03120
Position (kb) 726
727
728 Strain fitness (log2 ratio) -2
-1
0
1
2 at 725.586 kb on + strand, within CA264_03105 at 725.586 kb on + strand, within CA264_03105 at 725.587 kb on - strand, within CA264_03105 at 725.748 kb on - strand, within CA264_03105 at 725.838 kb on - strand, within CA264_03105 at 725.843 kb on + strand, within CA264_03105 at 725.843 kb on + strand, within CA264_03105 at 725.844 kb on - strand, within CA264_03105 at 725.880 kb on + strand, within CA264_03105 at 725.880 kb on + strand, within CA264_03105 at 725.885 kb on - strand, within CA264_03105 at 725.885 kb on - strand, within CA264_03105 at 725.928 kb on + strand, within CA264_03105 at 725.971 kb on + strand, within CA264_03105 at 725.971 kb on + strand, within CA264_03105 at 725.972 kb on - strand, within CA264_03105 at 725.972 kb on - strand, within CA264_03105 at 725.973 kb on + strand, within CA264_03105 at 725.973 kb on + strand, within CA264_03105 at 725.974 kb on - strand, within CA264_03105 at 725.974 kb on - strand, within CA264_03105 at 725.974 kb on - strand, within CA264_03105 at 725.975 kb on + strand, within CA264_03105 at 725.976 kb on - strand, within CA264_03105 at 726.016 kb on - strand, within CA264_03105 at 726.071 kb on - strand, within CA264_03105 at 726.073 kb on - strand, within CA264_03105 at 726.098 kb on - strand, within CA264_03105 at 726.142 kb on + strand, within CA264_03105 at 726.143 kb on - strand, within CA264_03105 at 726.247 kb on - strand at 726.304 kb on - strand at 726.467 kb on - strand at 726.468 kb on + strand at 726.557 kb on - strand, within CA264_03110 at 726.560 kb on - strand, within CA264_03110 at 726.560 kb on - strand, within CA264_03110 at 726.563 kb on + strand, within CA264_03110 at 726.563 kb on + strand, within CA264_03110 at 726.563 kb on + strand, within CA264_03110 at 726.564 kb on - strand, within CA264_03110 at 726.564 kb on - strand, within CA264_03110 at 726.564 kb on - strand, within CA264_03110 at 726.564 kb on - strand, within CA264_03110 at 726.590 kb on + strand, within CA264_03110 at 726.590 kb on + strand, within CA264_03110 at 726.591 kb on - strand, within CA264_03110 at 726.730 kb on + strand, within CA264_03110 at 726.733 kb on - strand, within CA264_03110 at 726.736 kb on + strand, within CA264_03110 at 726.736 kb on + strand, within CA264_03110 at 726.845 kb on - strand, within CA264_03110 at 726.857 kb on - strand, within CA264_03110 at 726.982 kb on + strand, within CA264_03110 at 726.982 kb on + strand, within CA264_03110 at 726.982 kb on + strand, within CA264_03110 at 727.212 kb on + strand, within CA264_03110 at 727.216 kb on - strand, within CA264_03110 at 727.265 kb on + strand, within CA264_03110 at 727.272 kb on + strand, within CA264_03110 at 727.344 kb on - strand at 727.364 kb on + strand at 727.377 kb on + strand at 727.377 kb on + strand at 727.391 kb on - strand at 727.393 kb on - strand at 727.446 kb on - strand at 727.478 kb on + strand at 727.479 kb on - strand at 727.669 kb on + strand, within CA264_03115 at 727.670 kb on - strand, within CA264_03115 at 727.670 kb on - strand, within CA264_03115 at 727.670 kb on - strand, within CA264_03115 at 727.673 kb on + strand, within CA264_03115 at 727.673 kb on + strand, within CA264_03115 at 727.674 kb on - strand, within CA264_03115 at 728.061 kb on + strand at 728.062 kb on - strand at 728.082 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 725,586 + CA264_03105 0.54 +0.1 725,586 + CA264_03105 0.54 +2.5 725,587 - CA264_03105 0.55 +0.0 725,748 - CA264_03105 0.65 -1.0 725,838 - CA264_03105 0.70 +0.3 725,843 + CA264_03105 0.71 +0.0 725,843 + CA264_03105 0.71 +0.7 725,844 - CA264_03105 0.71 +0.9 725,880 + CA264_03105 0.73 +0.6 725,880 + CA264_03105 0.73 +1.2 725,885 - CA264_03105 0.73 -0.7 725,885 - CA264_03105 0.73 +0.9 725,928 + CA264_03105 0.76 -0.1 725,971 + CA264_03105 0.79 +0.1 725,971 + CA264_03105 0.79 +0.3 725,972 - CA264_03105 0.79 +1.8 725,972 - CA264_03105 0.79 -0.5 725,973 + CA264_03105 0.79 +1.0 725,973 + CA264_03105 0.79 +0.1 725,974 - CA264_03105 0.79 -1.1 725,974 - CA264_03105 0.79 +1.1 725,974 - CA264_03105 0.79 -0.8 725,975 + CA264_03105 0.79 +1.5 725,976 - CA264_03105 0.79 -0.1 726,016 - CA264_03105 0.82 -0.2 726,071 - CA264_03105 0.85 -1.3 726,073 - CA264_03105 0.85 +0.3 726,098 - CA264_03105 0.87 +0.1 726,142 + CA264_03105 0.90 -0.4 726,143 - CA264_03105 0.90 -0.6 726,247 - -0.7 726,304 - +0.4 726,467 - +0.3 726,468 + +0.6 726,557 - CA264_03110 0.11 +0.5 726,560 - CA264_03110 0.12 +0.1 726,560 - CA264_03110 0.12 +1.3 726,563 + CA264_03110 0.12 -0.1 726,563 + CA264_03110 0.12 +1.0 726,563 + CA264_03110 0.12 +1.2 726,564 - CA264_03110 0.12 +0.6 726,564 - CA264_03110 0.12 -0.3 726,564 - CA264_03110 0.12 +0.3 726,564 - CA264_03110 0.12 -0.8 726,590 + CA264_03110 0.15 -0.3 726,590 + CA264_03110 0.15 -0.1 726,591 - CA264_03110 0.15 -0.1 726,730 + CA264_03110 0.30 -0.3 726,733 - CA264_03110 0.30 +1.5 726,736 + CA264_03110 0.31 +0.8 726,736 + CA264_03110 0.31 +0.1 726,845 - CA264_03110 0.43 +0.2 726,857 - CA264_03110 0.44 -0.2 726,982 + CA264_03110 0.58 +0.1 726,982 + CA264_03110 0.58 -0.3 726,982 + CA264_03110 0.58 -0.4 727,212 + CA264_03110 0.83 -0.1 727,216 - CA264_03110 0.83 -1.0 727,265 + CA264_03110 0.89 +0.1 727,272 + CA264_03110 0.90 +0.8 727,344 - -0.0 727,364 + +1.2 727,377 + +0.4 727,377 + -0.4 727,391 - -0.5 727,393 - -0.6 727,446 - -0.7 727,478 + +0.4 727,479 - -0.4 727,669 + CA264_03115 0.37 +0.7 727,670 - CA264_03115 0.37 -0.8 727,670 - CA264_03115 0.37 -0.8 727,670 - CA264_03115 0.37 +0.5 727,673 + CA264_03115 0.38 +0.3 727,673 + CA264_03115 0.38 -0.1 727,674 - CA264_03115 0.38 -1.1 728,061 + -2.5 728,062 - -0.1 728,082 - -1.3
Or see this region's nucleotide sequence