Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03030

Experiment: m.b. A22 0.04 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_03025 and CA264_03030 are separated by 289 nucleotidesCA264_03030 and CA264_03035 are separated by 209 nucleotides CA264_03025: CA264_03025 - T9SS C-terminal target domain-containing protein, at 698,146 to 699,651 _03025 CA264_03030: CA264_03030 - T9SS C-terminal target domain-containing protein, at 699,941 to 702,130 _03030 CA264_03035: CA264_03035 - T9SS C-terminal target domain-containing protein, at 702,340 to 705,885 _03035 Position (kb) 699 700 701 702 703Strain fitness (log2 ratio) -2 -1 0 1 2at 698.944 kb on + strand, within CA264_03025at 698.944 kb on + strand, within CA264_03025at 698.944 kb on + strand, within CA264_03025at 698.960 kb on + strand, within CA264_03025at 698.975 kb on + strand, within CA264_03025at 698.975 kb on + strand, within CA264_03025at 698.976 kb on - strand, within CA264_03025at 698.976 kb on - strand, within CA264_03025at 699.020 kb on - strand, within CA264_03025at 699.025 kb on - strand, within CA264_03025at 699.043 kb on + strand, within CA264_03025at 699.151 kb on - strand, within CA264_03025at 699.211 kb on + strand, within CA264_03025at 699.213 kb on + strand, within CA264_03025at 699.214 kb on - strand, within CA264_03025at 699.214 kb on - strand, within CA264_03025at 699.265 kb on + strand, within CA264_03025at 699.304 kb on + strand, within CA264_03025at 699.304 kb on + strand, within CA264_03025at 699.305 kb on - strand, within CA264_03025at 699.305 kb on - strand, within CA264_03025at 699.341 kb on - strand, within CA264_03025at 699.341 kb on - strand, within CA264_03025at 699.524 kb on + strandat 699.663 kb on + strandat 699.666 kb on - strandat 699.671 kb on + strandat 699.687 kb on + strandat 699.690 kb on - strandat 699.690 kb on - strandat 699.691 kb on + strandat 699.705 kb on + strandat 699.705 kb on + strandat 699.706 kb on - strandat 699.707 kb on + strandat 699.708 kb on - strandat 699.712 kb on + strandat 699.742 kb on + strandat 699.854 kb on + strandat 699.855 kb on - strandat 699.855 kb on - strandat 699.860 kb on + strandat 699.861 kb on - strandat 699.868 kb on - strandat 699.868 kb on - strandat 700.029 kb on - strandat 700.037 kb on + strandat 700.194 kb on + strand, within CA264_03030at 700.194 kb on + strand, within CA264_03030at 700.195 kb on - strand, within CA264_03030at 700.195 kb on - strand, within CA264_03030at 700.234 kb on - strand, within CA264_03030at 700.357 kb on + strand, within CA264_03030at 700.357 kb on + strand, within CA264_03030at 700.358 kb on - strand, within CA264_03030at 700.358 kb on - strand, within CA264_03030at 700.470 kb on - strand, within CA264_03030at 700.471 kb on + strand, within CA264_03030at 700.560 kb on + strand, within CA264_03030at 700.560 kb on + strand, within CA264_03030at 700.647 kb on + strand, within CA264_03030at 700.660 kb on + strand, within CA264_03030at 700.661 kb on - strand, within CA264_03030at 700.700 kb on + strand, within CA264_03030at 700.700 kb on + strand, within CA264_03030at 700.706 kb on + strand, within CA264_03030at 700.707 kb on - strand, within CA264_03030at 700.714 kb on - strand, within CA264_03030at 700.784 kb on - strand, within CA264_03030at 700.784 kb on - strand, within CA264_03030at 700.784 kb on - strand, within CA264_03030at 700.826 kb on + strand, within CA264_03030at 700.827 kb on - strand, within CA264_03030at 700.829 kb on - strand, within CA264_03030at 700.974 kb on - strand, within CA264_03030at 700.974 kb on - strand, within CA264_03030at 700.974 kb on - strand, within CA264_03030at 700.974 kb on - strand, within CA264_03030at 700.974 kb on - strand, within CA264_03030at 700.975 kb on + strand, within CA264_03030at 700.982 kb on + strand, within CA264_03030at 701.090 kb on + strand, within CA264_03030at 701.122 kb on + strand, within CA264_03030at 701.369 kb on + strand, within CA264_03030at 701.369 kb on + strand, within CA264_03030at 701.369 kb on + strand, within CA264_03030at 701.370 kb on - strand, within CA264_03030at 701.370 kb on - strand, within CA264_03030at 701.405 kb on - strand, within CA264_03030at 701.408 kb on + strand, within CA264_03030at 701.408 kb on + strand, within CA264_03030at 701.478 kb on - strand, within CA264_03030at 701.499 kb on + strand, within CA264_03030at 701.558 kb on + strand, within CA264_03030at 701.558 kb on + strand, within CA264_03030at 701.559 kb on - strand, within CA264_03030at 701.729 kb on - strand, within CA264_03030at 701.744 kb on + strand, within CA264_03030at 701.747 kb on - strand, within CA264_03030at 701.758 kb on + strand, within CA264_03030at 701.758 kb on + strand, within CA264_03030at 701.760 kb on + strand, within CA264_03030at 701.760 kb on + strand, within CA264_03030at 701.787 kb on - strand, within CA264_03030at 701.794 kb on + strand, within CA264_03030at 701.819 kb on + strand, within CA264_03030at 701.820 kb on - strand, within CA264_03030at 701.840 kb on - strand, within CA264_03030at 701.840 kb on - strand, within CA264_03030at 701.883 kb on - strand, within CA264_03030at 701.899 kb on - strand, within CA264_03030at 702.015 kb on - strandat 702.068 kb on + strandat 702.070 kb on + strandat 702.071 kb on - strandat 702.189 kb on + strandat 702.189 kb on + strandat 702.195 kb on + strandat 702.196 kb on - strandat 702.198 kb on - strandat 702.198 kb on - strandat 702.204 kb on - strandat 702.213 kb on + strandat 702.214 kb on - strandat 702.217 kb on + strandat 702.241 kb on - strandat 702.431 kb on + strandat 702.439 kb on - strandat 702.450 kb on + strandat 702.451 kb on - strandat 702.451 kb on - strandat 702.463 kb on - strandat 702.463 kb on - strandat 702.489 kb on + strandat 702.490 kb on - strandat 702.571 kb on + strandat 702.571 kb on + strandat 702.572 kb on - strandat 702.572 kb on - strandat 702.656 kb on + strandat 702.656 kb on + strandat 702.728 kb on - strand, within CA264_03035at 702.740 kb on + strand, within CA264_03035at 702.740 kb on + strand, within CA264_03035at 702.781 kb on + strand, within CA264_03035at 702.781 kb on + strand, within CA264_03035at 702.782 kb on - strand, within CA264_03035at 702.782 kb on - strand, within CA264_03035at 702.782 kb on - strand, within CA264_03035at 702.782 kb on - strand, within CA264_03035at 702.782 kb on - strand, within CA264_03035at 702.782 kb on - strand, within CA264_03035at 702.803 kb on - strand, within CA264_03035at 702.880 kb on - strand, within CA264_03035at 702.912 kb on + strand, within CA264_03035at 702.922 kb on - strand, within CA264_03035at 702.925 kb on + strand, within CA264_03035at 702.926 kb on - strand, within CA264_03035at 702.926 kb on - strand, within CA264_03035at 702.926 kb on - strand, within CA264_03035at 702.926 kb on - strand, within CA264_03035at 703.091 kb on + strand, within CA264_03035at 703.124 kb on + strand, within CA264_03035

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
remove
698,944 + CA264_03025 0.53 +0.3
698,944 + CA264_03025 0.53 +1.4
698,944 + CA264_03025 0.53 +1.2
698,960 + CA264_03025 0.54 +0.5
698,975 + CA264_03025 0.55 +0.8
698,975 + CA264_03025 0.55 +0.5
698,976 - CA264_03025 0.55 -0.6
698,976 - CA264_03025 0.55 -0.5
699,020 - CA264_03025 0.58 -1.4
699,025 - CA264_03025 0.58 -1.4
699,043 + CA264_03025 0.60 -0.6
699,151 - CA264_03025 0.67 +0.0
699,211 + CA264_03025 0.71 -0.1
699,213 + CA264_03025 0.71 +0.9
699,214 - CA264_03025 0.71 -0.3
699,214 - CA264_03025 0.71 -0.2
699,265 + CA264_03025 0.74 -0.7
699,304 + CA264_03025 0.77 +0.0
699,304 + CA264_03025 0.77 -0.9
699,305 - CA264_03025 0.77 -0.3
699,305 - CA264_03025 0.77 +0.6
699,341 - CA264_03025 0.79 -0.7
699,341 - CA264_03025 0.79 -0.6
699,524 + +0.8
699,663 + +1.8
699,666 - -0.5
699,671 + -0.3
699,687 + +0.1
699,690 - -0.5
699,690 - -0.5
699,691 + +0.8
699,705 + +2.3
699,705 + -0.7
699,706 - -0.4
699,707 + +1.0
699,708 - +0.8
699,712 + -1.2
699,742 + +0.1
699,854 + +0.0
699,855 - +0.9
699,855 - -0.2
699,860 + +0.0
699,861 - -1.2
699,868 - -0.4
699,868 - +0.8
700,029 - -0.1
700,037 + +0.3
700,194 + CA264_03030 0.12 +0.7
700,194 + CA264_03030 0.12 +2.3
700,195 - CA264_03030 0.12 -0.1
700,195 - CA264_03030 0.12 -0.3
700,234 - CA264_03030 0.13 -0.7
700,357 + CA264_03030 0.19 +0.4
700,357 + CA264_03030 0.19 -0.3
700,358 - CA264_03030 0.19 -0.5
700,358 - CA264_03030 0.19 +0.1
700,470 - CA264_03030 0.24 -0.6
700,471 + CA264_03030 0.24 +0.7
700,560 + CA264_03030 0.28 -0.6
700,560 + CA264_03030 0.28 +0.3
700,647 + CA264_03030 0.32 +0.6
700,660 + CA264_03030 0.33 +0.6
700,661 - CA264_03030 0.33 +0.5
700,700 + CA264_03030 0.35 +0.6
700,700 + CA264_03030 0.35 +1.1
700,706 + CA264_03030 0.35 +0.2
700,707 - CA264_03030 0.35 +0.3
700,714 - CA264_03030 0.35 -0.2
700,784 - CA264_03030 0.38 -1.0
700,784 - CA264_03030 0.38 -0.6
700,784 - CA264_03030 0.38 +0.8
700,826 + CA264_03030 0.40 +1.3
700,827 - CA264_03030 0.40 -0.4
700,829 - CA264_03030 0.41 -0.7
700,974 - CA264_03030 0.47 +0.7
700,974 - CA264_03030 0.47 -0.5
700,974 - CA264_03030 0.47 -0.3
700,974 - CA264_03030 0.47 +0.6
700,974 - CA264_03030 0.47 -0.3
700,975 + CA264_03030 0.47 +1.2
700,982 + CA264_03030 0.48 +0.3
701,090 + CA264_03030 0.52 -0.3
701,122 + CA264_03030 0.54 +0.5
701,369 + CA264_03030 0.65 +0.6
701,369 + CA264_03030 0.65 +0.6
701,369 + CA264_03030 0.65 +0.6
701,370 - CA264_03030 0.65 -1.4
701,370 - CA264_03030 0.65 +0.0
701,405 - CA264_03030 0.67 -0.7
701,408 + CA264_03030 0.67 -0.1
701,408 + CA264_03030 0.67 -0.6
701,478 - CA264_03030 0.70 -0.5
701,499 + CA264_03030 0.71 +0.9
701,558 + CA264_03030 0.74 +0.2
701,558 + CA264_03030 0.74 +0.4
701,559 - CA264_03030 0.74 -0.9
701,729 - CA264_03030 0.82 -0.4
701,744 + CA264_03030 0.82 -0.6
701,747 - CA264_03030 0.82 -0.4
701,758 + CA264_03030 0.83 +0.4
701,758 + CA264_03030 0.83 +0.9
701,760 + CA264_03030 0.83 +1.1
701,760 + CA264_03030 0.83 +0.8
701,787 - CA264_03030 0.84 -0.4
701,794 + CA264_03030 0.85 +0.7
701,819 + CA264_03030 0.86 +0.5
701,820 - CA264_03030 0.86 -0.1
701,840 - CA264_03030 0.87 -0.0
701,840 - CA264_03030 0.87 -0.3
701,883 - CA264_03030 0.89 -0.6
701,899 - CA264_03030 0.89 +0.9
702,015 - -0.7
702,068 + +0.7
702,070 + +0.5
702,071 - -1.5
702,189 + -0.2
702,189 + +0.5
702,195 + +0.8
702,196 - -1.8
702,198 - -1.9
702,198 - -1.8
702,204 - -0.4
702,213 + +0.5
702,214 - -0.5
702,217 + +0.9
702,241 - -0.7
702,431 + -0.8
702,439 - -0.7
702,450 + +0.1
702,451 - -0.2
702,451 - -0.1
702,463 - -0.5
702,463 - -2.3
702,489 + -0.2
702,490 - -0.7
702,571 + -0.6
702,571 + -0.1
702,572 - -0.2
702,572 - -0.5
702,656 + +0.1
702,656 + -0.5
702,728 - CA264_03035 0.11 -0.5
702,740 + CA264_03035 0.11 -0.6
702,740 + CA264_03035 0.11 -0.2
702,781 + CA264_03035 0.12 +0.1
702,781 + CA264_03035 0.12 +0.3
702,782 - CA264_03035 0.12 -2.2
702,782 - CA264_03035 0.12 -0.7
702,782 - CA264_03035 0.12 -0.7
702,782 - CA264_03035 0.12 +0.1
702,782 - CA264_03035 0.12 +0.6
702,782 - CA264_03035 0.12 -0.8
702,803 - CA264_03035 0.13 -0.6
702,880 - CA264_03035 0.15 -1.1
702,912 + CA264_03035 0.16 -0.5
702,922 - CA264_03035 0.16 -0.2
702,925 + CA264_03035 0.16 -0.8
702,926 - CA264_03035 0.17 -0.5
702,926 - CA264_03035 0.17 -1.1
702,926 - CA264_03035 0.17 +0.5
702,926 - CA264_03035 0.17 -0.7
703,091 + CA264_03035 0.21 -0.8
703,124 + CA264_03035 0.22 +0.4

Or see this region's nucleotide sequence