Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02755

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02750 and CA264_02755 are separated by 73 nucleotidesCA264_02755 and CA264_02760 are separated by 228 nucleotides CA264_02750: CA264_02750 - RNA-binding transcriptional accessory protein, at 633,488 to 635,758 _02750 CA264_02755: CA264_02755 - PKD domain-containing protein, at 635,832 to 637,178 _02755 CA264_02760: CA264_02760 - hypothetical protein, at 637,407 to 638,078 _02760 Position (kb) 635 636 637 638Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 634.938 kb on + strand, within CA264_02750at 634.938 kb on + strand, within CA264_02750at 634.939 kb on - strand, within CA264_02750at 634.979 kb on + strand, within CA264_02750at 634.979 kb on + strand, within CA264_02750at 634.979 kb on + strand, within CA264_02750at 634.979 kb on + strand, within CA264_02750at 634.979 kb on + strand, within CA264_02750at 634.979 kb on + strand, within CA264_02750at 634.979 kb on + strand, within CA264_02750at 634.979 kb on + strand, within CA264_02750at 634.979 kb on + strand, within CA264_02750at 634.980 kb on - strand, within CA264_02750at 634.980 kb on - strand, within CA264_02750at 634.980 kb on - strand, within CA264_02750at 634.980 kb on - strand, within CA264_02750at 634.980 kb on - strand, within CA264_02750at 634.983 kb on + strand, within CA264_02750at 634.984 kb on - strand, within CA264_02750at 634.984 kb on - strand, within CA264_02750at 635.090 kb on - strand, within CA264_02750at 635.270 kb on + strand, within CA264_02750at 635.270 kb on + strand, within CA264_02750at 635.271 kb on - strand, within CA264_02750at 635.274 kb on + strand, within CA264_02750at 635.322 kb on + strand, within CA264_02750at 635.383 kb on - strand, within CA264_02750at 635.430 kb on + strand, within CA264_02750at 635.547 kb on + strandat 635.559 kb on + strandat 635.559 kb on + strandat 635.565 kb on + strandat 635.565 kb on + strandat 635.566 kb on - strandat 635.566 kb on - strandat 635.594 kb on - strandat 635.594 kb on - strandat 635.612 kb on - strandat 635.665 kb on + strandat 635.757 kb on - strandat 635.775 kb on - strandat 635.851 kb on - strandat 635.864 kb on + strandat 635.891 kb on - strandat 635.891 kb on - strandat 635.906 kb on - strandat 636.024 kb on + strand, within CA264_02755at 636.163 kb on + strand, within CA264_02755at 636.164 kb on - strand, within CA264_02755at 636.197 kb on - strand, within CA264_02755at 636.310 kb on - strand, within CA264_02755at 636.318 kb on + strand, within CA264_02755at 636.348 kb on + strand, within CA264_02755at 636.349 kb on - strand, within CA264_02755at 636.370 kb on + strand, within CA264_02755at 636.370 kb on + strand, within CA264_02755at 636.371 kb on - strand, within CA264_02755at 636.541 kb on + strand, within CA264_02755at 636.549 kb on + strand, within CA264_02755at 636.550 kb on - strand, within CA264_02755at 636.550 kb on - strand, within CA264_02755at 636.585 kb on + strand, within CA264_02755at 636.654 kb on + strand, within CA264_02755at 636.655 kb on - strand, within CA264_02755at 636.742 kb on - strand, within CA264_02755at 636.807 kb on + strand, within CA264_02755at 636.808 kb on - strand, within CA264_02755at 636.832 kb on + strand, within CA264_02755at 636.832 kb on + strand, within CA264_02755at 636.833 kb on - strand, within CA264_02755at 636.836 kb on - strand, within CA264_02755at 636.836 kb on - strand, within CA264_02755at 636.836 kb on - strand, within CA264_02755at 636.836 kb on - strand, within CA264_02755at 636.893 kb on - strand, within CA264_02755at 636.893 kb on - strand, within CA264_02755at 636.893 kb on - strand, within CA264_02755at 636.897 kb on - strand, within CA264_02755at 636.897 kb on - strand, within CA264_02755at 636.962 kb on - strand, within CA264_02755at 636.976 kb on + strand, within CA264_02755at 636.976 kb on + strand, within CA264_02755at 637.000 kb on + strand, within CA264_02755at 637.001 kb on - strand, within CA264_02755at 637.003 kb on + strand, within CA264_02755at 637.054 kb on + strandat 637.054 kb on + strandat 637.055 kb on - strandat 637.055 kb on - strandat 637.055 kb on - strandat 637.055 kb on - strandat 637.112 kb on - strandat 637.149 kb on + strandat 637.155 kb on - strandat 637.187 kb on - strandat 637.199 kb on + strandat 637.200 kb on - strandat 637.233 kb on + strandat 637.243 kb on + strandat 637.248 kb on + strandat 637.249 kb on - strandat 637.332 kb on + strandat 637.333 kb on - strandat 637.333 kb on - strandat 637.335 kb on - strandat 637.341 kb on - strandat 637.354 kb on + strandat 637.370 kb on + strandat 637.370 kb on + strandat 637.371 kb on - strandat 637.374 kb on + strandat 637.375 kb on - strandat 637.375 kb on - strandat 637.375 kb on - strandat 637.380 kb on - strandat 637.388 kb on + strandat 637.406 kb on + strandat 637.482 kb on - strand, within CA264_02760at 637.502 kb on + strand, within CA264_02760at 637.503 kb on - strand, within CA264_02760at 637.503 kb on - strand, within CA264_02760at 637.503 kb on - strand, within CA264_02760at 637.567 kb on + strand, within CA264_02760at 637.648 kb on + strand, within CA264_02760at 637.648 kb on + strand, within CA264_02760at 637.653 kb on + strand, within CA264_02760at 637.654 kb on - strand, within CA264_02760at 637.668 kb on + strand, within CA264_02760at 637.671 kb on - strand, within CA264_02760at 637.730 kb on - strand, within CA264_02760at 637.740 kb on + strand, within CA264_02760at 637.740 kb on + strand, within CA264_02760at 637.740 kb on + strand, within CA264_02760at 637.740 kb on + strand, within CA264_02760at 637.740 kb on + strand, within CA264_02760at 637.740 kb on + strand, within CA264_02760at 637.741 kb on - strand, within CA264_02760at 637.741 kb on - strand, within CA264_02760at 637.741 kb on - strand, within CA264_02760at 637.741 kb on - strand, within CA264_02760at 637.741 kb on - strand, within CA264_02760at 637.746 kb on + strand, within CA264_02760at 637.831 kb on - strand, within CA264_02760at 637.938 kb on + strand, within CA264_02760at 637.938 kb on + strand, within CA264_02760at 637.939 kb on - strand, within CA264_02760at 637.939 kb on - strand, within CA264_02760at 637.997 kb on + strand, within CA264_02760at 638.012 kb on + strandat 638.013 kb on - strandat 638.054 kb on - strandat 638.054 kb on - strandat 638.077 kb on - strandat 638.090 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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634,938 + CA264_02750 0.64 +1.0
634,938 + CA264_02750 0.64 +0.3
634,939 - CA264_02750 0.64 +0.8
634,979 + CA264_02750 0.66 +0.6
634,979 + CA264_02750 0.66 +0.6
634,979 + CA264_02750 0.66 +0.4
634,979 + CA264_02750 0.66 +0.3
634,979 + CA264_02750 0.66 +0.5
634,979 + CA264_02750 0.66 +0.2
634,979 + CA264_02750 0.66 +0.7
634,979 + CA264_02750 0.66 +0.4
634,979 + CA264_02750 0.66 +0.7
634,980 - CA264_02750 0.66 -1.6
634,980 - CA264_02750 0.66 -1.0
634,980 - CA264_02750 0.66 -0.4
634,980 - CA264_02750 0.66 -1.3
634,980 - CA264_02750 0.66 +1.2
634,983 + CA264_02750 0.66 +0.4
634,984 - CA264_02750 0.66 -1.1
634,984 - CA264_02750 0.66 -0.9
635,090 - CA264_02750 0.71 -1.5
635,270 + CA264_02750 0.78 +0.2
635,270 + CA264_02750 0.78 +0.2
635,271 - CA264_02750 0.79 -0.8
635,274 + CA264_02750 0.79 +0.2
635,322 + CA264_02750 0.81 -0.5
635,383 - CA264_02750 0.83 -0.2
635,430 + CA264_02750 0.86 +1.0
635,547 + +1.1
635,559 + +0.4
635,559 + +0.4
635,565 + +0.6
635,565 + -0.3
635,566 - -3.0
635,566 - -0.3
635,594 - -0.6
635,594 - -0.2
635,612 - -0.3
635,665 + +1.0
635,757 - -0.1
635,775 - -0.8
635,851 - +0.7
635,864 + -0.0
635,891 - -1.0
635,891 - -0.1
635,906 - +0.4
636,024 + CA264_02755 0.14 +0.0
636,163 + CA264_02755 0.25 -1.0
636,164 - CA264_02755 0.25 -0.7
636,197 - CA264_02755 0.27 +1.5
636,310 - CA264_02755 0.35 +0.3
636,318 + CA264_02755 0.36 +0.4
636,348 + CA264_02755 0.38 -0.2
636,349 - CA264_02755 0.38 -0.3
636,370 + CA264_02755 0.40 -0.3
636,370 + CA264_02755 0.40 -1.1
636,371 - CA264_02755 0.40 -0.9
636,541 + CA264_02755 0.53 +0.2
636,549 + CA264_02755 0.53 +0.1
636,550 - CA264_02755 0.53 -1.5
636,550 - CA264_02755 0.53 +0.3
636,585 + CA264_02755 0.56 -0.9
636,654 + CA264_02755 0.61 +0.3
636,655 - CA264_02755 0.61 +0.5
636,742 - CA264_02755 0.68 +0.8
636,807 + CA264_02755 0.72 -0.2
636,808 - CA264_02755 0.72 -0.1
636,832 + CA264_02755 0.74 +0.1
636,832 + CA264_02755 0.74 -0.0
636,833 - CA264_02755 0.74 +0.2
636,836 - CA264_02755 0.75 +0.0
636,836 - CA264_02755 0.75 +0.2
636,836 - CA264_02755 0.75 +0.9
636,836 - CA264_02755 0.75 +0.2
636,893 - CA264_02755 0.79 -0.0
636,893 - CA264_02755 0.79 +0.3
636,893 - CA264_02755 0.79 -0.6
636,897 - CA264_02755 0.79 +0.2
636,897 - CA264_02755 0.79 +0.3
636,962 - CA264_02755 0.84 +0.2
636,976 + CA264_02755 0.85 -0.4
636,976 + CA264_02755 0.85 -0.7
637,000 + CA264_02755 0.87 +0.5
637,001 - CA264_02755 0.87 +0.9
637,003 + CA264_02755 0.87 -0.3
637,054 + +0.4
637,054 + +0.6
637,055 - -0.1
637,055 - +0.6
637,055 - -0.4
637,055 - -0.2
637,112 - -1.1
637,149 + +0.1
637,155 - +0.2
637,187 - -1.4
637,199 + -0.3
637,200 - +0.4
637,233 + +0.4
637,243 + -0.0
637,248 + +0.8
637,249 - -0.4
637,332 + -0.2
637,333 - -0.1
637,333 - +0.0
637,335 - -1.3
637,341 - -0.5
637,354 + -0.7
637,370 + -0.6
637,370 + -0.5
637,371 - -0.6
637,374 + +0.7
637,375 - -0.2
637,375 - -0.7
637,375 - -0.6
637,380 - +0.1
637,388 + -0.2
637,406 + +0.2
637,482 - CA264_02760 0.11 +0.3
637,502 + CA264_02760 0.14 +0.6
637,503 - CA264_02760 0.14 -0.9
637,503 - CA264_02760 0.14 -0.9
637,503 - CA264_02760 0.14 -0.0
637,567 + CA264_02760 0.24 -0.4
637,648 + CA264_02760 0.36 +0.8
637,648 + CA264_02760 0.36 +0.2
637,653 + CA264_02760 0.37 -0.3
637,654 - CA264_02760 0.37 -1.4
637,668 + CA264_02760 0.39 -0.6
637,671 - CA264_02760 0.39 +0.0
637,730 - CA264_02760 0.48 -0.7
637,740 + CA264_02760 0.50 +0.3
637,740 + CA264_02760 0.50 -0.1
637,740 + CA264_02760 0.50 +0.6
637,740 + CA264_02760 0.50 +0.5
637,740 + CA264_02760 0.50 +0.3
637,740 + CA264_02760 0.50 +0.5
637,741 - CA264_02760 0.50 -1.6
637,741 - CA264_02760 0.50 -1.5
637,741 - CA264_02760 0.50 -2.0
637,741 - CA264_02760 0.50 -1.3
637,741 - CA264_02760 0.50 -2.7
637,746 + CA264_02760 0.50 +1.6
637,831 - CA264_02760 0.63 -0.8
637,938 + CA264_02760 0.79 +1.8
637,938 + CA264_02760 0.79 -0.6
637,939 - CA264_02760 0.79 -2.0
637,939 - CA264_02760 0.79 -1.2
637,997 + CA264_02760 0.88 +0.7
638,012 + +1.4
638,013 - -1.8
638,054 - -0.9
638,054 - -2.1
638,077 - -0.7
638,090 - -0.7

Or see this region's nucleotide sequence