Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02675 and CA264_02680 are separated by 190 nucleotides CA264_02680 and CA264_02685 overlap by 11 nucleotides CA264_02685 and CA264_02690 are separated by 71 nucleotides
CA264_02675: CA264_02675 - succinate-semialdehyde dehydrogenase, at 618,860 to 620,224
_02675
CA264_02680: CA264_02680 - RNA polymerase subunit sigma-70, at 620,415 to 620,972
_02680
CA264_02685: CA264_02685 - hypothetical protein, at 620,962 to 621,777
_02685
CA264_02690: CA264_02690 - rhodanese, at 621,849 to 622,328
_02690
Position (kb) 620
621 Strain fitness (log2 ratio) -2
-1
0
1
2 at 619.520 kb on - strand, within CA264_02675 at 619.775 kb on + strand, within CA264_02675 at 619.775 kb on + strand, within CA264_02675 at 619.776 kb on - strand, within CA264_02675 at 619.776 kb on - strand, within CA264_02675 at 619.854 kb on - strand, within CA264_02675 at 619.945 kb on - strand, within CA264_02675 at 620.074 kb on + strand, within CA264_02675 at 620.074 kb on + strand, within CA264_02675 at 620.075 kb on - strand, within CA264_02675 at 620.151 kb on - strand at 620.173 kb on + strand at 620.216 kb on + strand at 620.248 kb on + strand at 620.249 kb on - strand at 620.249 kb on - strand at 620.249 kb on - strand at 620.249 kb on - strand at 620.249 kb on - strand at 620.252 kb on + strand at 620.268 kb on + strand at 620.268 kb on + strand at 620.270 kb on + strand at 620.271 kb on - strand at 620.339 kb on - strand at 620.346 kb on + strand at 620.347 kb on - strand at 620.353 kb on - strand at 620.353 kb on - strand at 620.359 kb on + strand at 620.360 kb on - strand at 620.511 kb on + strand, within CA264_02680 at 620.667 kb on - strand, within CA264_02680 at 620.765 kb on + strand, within CA264_02680 at 620.847 kb on + strand, within CA264_02680 at 620.886 kb on + strand, within CA264_02680 at 620.933 kb on + strand at 620.934 kb on - strand at 620.980 kb on + strand at 620.980 kb on + strand at 620.984 kb on + strand at 621.169 kb on - strand, within CA264_02685 at 621.180 kb on - strand, within CA264_02685 at 621.393 kb on + strand, within CA264_02685 at 621.394 kb on - strand, within CA264_02685 at 621.457 kb on + strand, within CA264_02685 at 621.457 kb on + strand, within CA264_02685 at 621.458 kb on - strand, within CA264_02685 at 621.459 kb on + strand, within CA264_02685 at 621.539 kb on + strand, within CA264_02685 at 621.540 kb on - strand, within CA264_02685 at 621.542 kb on - strand, within CA264_02685 at 621.635 kb on + strand, within CA264_02685 at 621.636 kb on - strand, within CA264_02685 at 621.636 kb on - strand, within CA264_02685 at 621.642 kb on - strand, within CA264_02685 at 621.751 kb on + strand at 621.751 kb on + strand at 621.832 kb on + strand at 621.836 kb on + strand at 621.859 kb on + strand at 621.892 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 619,520 - CA264_02675 0.48 -0.0 619,775 + CA264_02675 0.67 -0.8 619,775 + CA264_02675 0.67 -0.4 619,776 - CA264_02675 0.67 +2.2 619,776 - CA264_02675 0.67 -1.0 619,854 - CA264_02675 0.73 +1.7 619,945 - CA264_02675 0.79 +0.2 620,074 + CA264_02675 0.89 +0.5 620,074 + CA264_02675 0.89 -0.3 620,075 - CA264_02675 0.89 +0.4 620,151 - +0.6 620,173 + +0.1 620,216 + -1.3 620,248 + +0.1 620,249 - -0.8 620,249 - +0.1 620,249 - +0.7 620,249 - +0.4 620,249 - +1.2 620,252 + -1.2 620,268 + -1.1 620,268 + -0.4 620,270 + +0.1 620,271 - -0.6 620,339 - -0.8 620,346 + -2.3 620,347 - -1.1 620,353 - +0.4 620,353 - -0.3 620,359 + +0.0 620,360 - +0.1 620,511 + CA264_02680 0.17 +0.4 620,667 - CA264_02680 0.45 +0.5 620,765 + CA264_02680 0.63 -0.7 620,847 + CA264_02680 0.77 -0.4 620,886 + CA264_02680 0.84 -1.4 620,933 + -0.5 620,934 - +0.2 620,980 + -0.1 620,980 + +2.5 620,984 + -1.0 621,169 - CA264_02685 0.25 +0.5 621,180 - CA264_02685 0.27 -0.9 621,393 + CA264_02685 0.53 -1.0 621,394 - CA264_02685 0.53 -0.4 621,457 + CA264_02685 0.61 -1.0 621,457 + CA264_02685 0.61 -1.1 621,458 - CA264_02685 0.61 +0.4 621,459 + CA264_02685 0.61 -2.4 621,539 + CA264_02685 0.71 -1.8 621,540 - CA264_02685 0.71 -0.5 621,542 - CA264_02685 0.71 -1.1 621,635 + CA264_02685 0.82 -1.0 621,636 - CA264_02685 0.83 -0.8 621,636 - CA264_02685 0.83 -0.9 621,642 - CA264_02685 0.83 -1.3 621,751 + -0.4 621,751 + +0.3 621,832 + -0.7 621,836 + +0.9 621,859 + -0.1 621,892 - -0.7
Or see this region's nucleotide sequence