Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02435

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02430 and CA264_02435 are separated by 338 nucleotidesCA264_02435 and CA264_02440 are separated by 186 nucleotides CA264_02430: CA264_02430 - glucoamylase, at 565,986 to 567,818 _02430 CA264_02435: CA264_02435 - hypothetical protein, at 568,157 to 568,807 _02435 CA264_02440: CA264_02440 - vitamin K epoxide reductase, at 568,994 to 570,556 _02440 Position (kb) 568 569Strain fitness (log2 ratio) -3 -2 -1 0 1at 567.195 kb on - strand, within CA264_02430at 567.220 kb on + strand, within CA264_02430at 567.220 kb on + strand, within CA264_02430at 567.221 kb on - strand, within CA264_02430at 567.221 kb on - strand, within CA264_02430at 567.221 kb on - strand, within CA264_02430at 567.614 kb on - strand, within CA264_02430at 567.623 kb on + strand, within CA264_02430at 567.625 kb on + strand, within CA264_02430at 567.767 kb on + strandat 567.767 kb on + strandat 567.791 kb on - strandat 567.809 kb on - strandat 567.809 kb on - strandat 567.821 kb on + strandat 567.823 kb on + strandat 567.868 kb on + strandat 567.869 kb on - strandat 568.067 kb on + strandat 568.075 kb on + strandat 568.076 kb on - strandat 568.148 kb on + strandat 568.200 kb on + strandat 568.204 kb on - strandat 568.378 kb on + strand, within CA264_02435at 568.391 kb on - strand, within CA264_02435at 568.484 kb on + strand, within CA264_02435at 568.484 kb on + strand, within CA264_02435at 568.486 kb on + strand, within CA264_02435at 568.486 kb on + strand, within CA264_02435at 568.486 kb on + strand, within CA264_02435at 568.487 kb on - strand, within CA264_02435at 568.543 kb on + strand, within CA264_02435at 568.590 kb on + strand, within CA264_02435at 568.631 kb on + strand, within CA264_02435at 568.638 kb on - strand, within CA264_02435at 568.755 kb on - strandat 568.790 kb on + strandat 568.790 kb on + strandat 568.799 kb on - strandat 568.807 kb on + strandat 568.807 kb on + strandat 568.807 kb on + strandat 568.807 kb on + strandat 568.807 kb on + strandat 568.807 kb on + strandat 568.807 kb on + strandat 568.807 kb on + strandat 568.807 kb on + strandat 568.808 kb on - strandat 568.808 kb on - strandat 568.808 kb on - strandat 568.810 kb on + strandat 568.811 kb on - strandat 568.844 kb on + strandat 568.888 kb on + strandat 568.889 kb on - strandat 568.889 kb on - strandat 568.895 kb on + strandat 568.944 kb on + strandat 568.944 kb on + strandat 568.945 kb on - strandat 568.947 kb on - strandat 568.953 kb on - strandat 568.953 kb on - strandat 568.962 kb on - strandat 568.990 kb on - strandat 568.990 kb on - strandat 568.990 kb on - strandat 569.053 kb on + strandat 569.074 kb on + strandat 569.075 kb on - strandat 569.140 kb on + strandat 569.310 kb on + strand, within CA264_02440at 569.529 kb on + strand, within CA264_02440at 569.615 kb on + strand, within CA264_02440at 569.615 kb on + strand, within CA264_02440at 569.616 kb on - strand, within CA264_02440at 569.711 kb on + strand, within CA264_02440

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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567,195 - CA264_02430 0.66 +0.8
567,220 + CA264_02430 0.67 -0.8
567,220 + CA264_02430 0.67 +0.6
567,221 - CA264_02430 0.67 -1.0
567,221 - CA264_02430 0.67 +0.0
567,221 - CA264_02430 0.67 +0.4
567,614 - CA264_02430 0.89 -0.1
567,623 + CA264_02430 0.89 -0.9
567,625 + CA264_02430 0.89 -0.4
567,767 + -0.4
567,767 + -0.0
567,791 - +1.2
567,809 - -0.6
567,809 - -0.9
567,821 + +0.3
567,823 + -0.3
567,868 + -0.8
567,869 - +1.0
568,067 + -0.4
568,075 + -0.5
568,076 - -0.2
568,148 + -0.7
568,200 + -2.1
568,204 - +0.3
568,378 + CA264_02435 0.34 -1.0
568,391 - CA264_02435 0.36 -0.4
568,484 + CA264_02435 0.50 +0.4
568,484 + CA264_02435 0.50 -0.7
568,486 + CA264_02435 0.51 -1.0
568,486 + CA264_02435 0.51 -1.8
568,486 + CA264_02435 0.51 -0.8
568,487 - CA264_02435 0.51 -0.0
568,543 + CA264_02435 0.59 -1.1
568,590 + CA264_02435 0.67 -2.1
568,631 + CA264_02435 0.73 +0.9
568,638 - CA264_02435 0.74 -0.6
568,755 - -0.7
568,790 + -2.6
568,790 + -2.6
568,799 - +0.0
568,807 + -2.0
568,807 + -0.6
568,807 + -2.4
568,807 + -1.7
568,807 + -1.0
568,807 + -1.0
568,807 + -2.6
568,807 + -1.7
568,807 + -1.8
568,808 - +0.8
568,808 - -0.6
568,808 - -0.6
568,810 + -1.3
568,811 - -1.1
568,844 + -1.8
568,888 + -1.2
568,889 - -0.6
568,889 - -0.1
568,895 + -1.3
568,944 + -2.4
568,944 + -1.1
568,945 - -1.0
568,947 - +0.1
568,953 - -1.1
568,953 - +0.1
568,962 - -2.8
568,990 - -1.0
568,990 - +0.6
568,990 - -1.0
569,053 + -1.9
569,074 + -0.7
569,075 - -0.3
569,140 + +0.1
569,310 + CA264_02440 0.20 -1.2
569,529 + CA264_02440 0.34 -0.9
569,615 + CA264_02440 0.40 +0.6
569,615 + CA264_02440 0.40 -0.0
569,616 - CA264_02440 0.40 +0.4
569,711 + CA264_02440 0.46 -0.4

Or see this region's nucleotide sequence