Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02000 and CA264_02005 are separated by 150 nucleotides CA264_02005 and CA264_02010 are separated by 158 nucleotides CA264_02010 and CA264_02015 are separated by 161 nucleotides
CA264_02000: CA264_02000 - short chain dehydrogenase, at 460,586 to 461,395
_02000
CA264_02005: CA264_02005 - 23S rRNA (uracil-5-)-methyltransferase RumA, at 461,546 to 462,958
_02005
CA264_02010: CA264_02010 - hypothetical protein, at 463,117 to 463,485
_02010
CA264_02015: CA264_02015 - thiamine-phosphate kinase, at 463,647 to 464,672
_02015
Position (kb) 461
462
463 Strain fitness (log2 ratio) -2
-1
0
1
2 at 460.587 kb on + strand at 460.588 kb on - strand at 460.588 kb on - strand at 460.588 kb on - strand at 460.588 kb on - strand at 460.588 kb on - strand at 461.481 kb on + strand at 461.481 kb on + strand at 461.481 kb on + strand at 461.482 kb on - strand at 461.482 kb on - strand at 461.484 kb on - strand at 461.484 kb on - strand at 461.514 kb on - strand at 461.554 kb on + strand at 461.652 kb on + strand at 461.806 kb on + strand, within CA264_02005 at 461.806 kb on + strand, within CA264_02005 at 461.807 kb on - strand, within CA264_02005 at 461.807 kb on - strand, within CA264_02005 at 461.959 kb on + strand, within CA264_02005 at 462.058 kb on + strand, within CA264_02005 at 462.084 kb on - strand, within CA264_02005 at 462.182 kb on + strand, within CA264_02005 at 462.184 kb on + strand, within CA264_02005 at 462.212 kb on - strand, within CA264_02005 at 462.245 kb on + strand, within CA264_02005 at 462.245 kb on + strand, within CA264_02005 at 462.379 kb on + strand, within CA264_02005 at 462.392 kb on + strand, within CA264_02005 at 462.393 kb on - strand, within CA264_02005 at 462.393 kb on - strand, within CA264_02005 at 462.436 kb on + strand, within CA264_02005 at 462.437 kb on - strand, within CA264_02005 at 462.471 kb on - strand, within CA264_02005 at 462.525 kb on + strand, within CA264_02005 at 462.528 kb on - strand, within CA264_02005 at 462.528 kb on - strand, within CA264_02005 at 462.536 kb on + strand, within CA264_02005 at 462.559 kb on + strand, within CA264_02005 at 462.588 kb on + strand, within CA264_02005 at 462.602 kb on + strand, within CA264_02005 at 462.603 kb on - strand, within CA264_02005 at 462.672 kb on - strand, within CA264_02005 at 462.876 kb on - strand at 462.876 kb on - strand at 462.882 kb on + strand at 462.937 kb on - strand at 462.937 kb on - strand at 462.939 kb on + strand at 462.939 kb on + strand at 462.940 kb on - strand at 462.940 kb on - strand at 462.940 kb on - strand at 462.952 kb on + strand at 462.952 kb on + strand at 462.953 kb on - strand at 462.956 kb on + strand at 462.956 kb on + strand at 462.956 kb on + strand at 462.957 kb on - strand at 462.977 kb on - strand at 462.977 kb on - strand at 463.037 kb on - strand at 463.037 kb on - strand at 463.096 kb on + strand at 463.097 kb on - strand at 463.143 kb on + strand at 463.320 kb on + strand, within CA264_02010 at 463.323 kb on + strand, within CA264_02010 at 463.324 kb on - strand, within CA264_02010 at 463.324 kb on - strand, within CA264_02010 at 463.334 kb on - strand, within CA264_02010 at 463.348 kb on - strand, within CA264_02010 at 463.349 kb on + strand, within CA264_02010 at 463.389 kb on + strand, within CA264_02010 at 463.390 kb on - strand, within CA264_02010 at 463.400 kb on - strand, within CA264_02010 at 463.401 kb on + strand, within CA264_02010 at 463.465 kb on - strand at 463.505 kb on - strand at 463.515 kb on + strand at 463.516 kb on - strand at 463.537 kb on + strand at 463.537 kb on + strand at 463.541 kb on + strand at 463.542 kb on - strand at 463.542 kb on - strand at 463.561 kb on - strand at 463.561 kb on - strand at 463.563 kb on + strand at 463.563 kb on + strand at 463.564 kb on - strand at 463.564 kb on - strand at 463.564 kb on - strand at 463.603 kb on + strand at 463.611 kb on + strand at 463.611 kb on + strand at 463.612 kb on - strand at 463.622 kb on - strand at 463.622 kb on - strand at 463.631 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 460,587 + +0.0 460,588 - +1.3 460,588 - -0.9 460,588 - +1.0 460,588 - +0.2 460,588 - +0.9 461,481 + -0.3 461,481 + -0.8 461,481 + -0.2 461,482 - +0.6 461,482 - -0.2 461,484 - -0.8 461,484 - -0.6 461,514 - +0.6 461,554 + +0.2 461,652 + +0.1 461,806 + CA264_02005 0.18 +0.5 461,806 + CA264_02005 0.18 -0.9 461,807 - CA264_02005 0.18 -0.1 461,807 - CA264_02005 0.18 -0.9 461,959 + CA264_02005 0.29 +0.1 462,058 + CA264_02005 0.36 +0.1 462,084 - CA264_02005 0.38 -1.2 462,182 + CA264_02005 0.45 +0.4 462,184 + CA264_02005 0.45 +0.7 462,212 - CA264_02005 0.47 +1.0 462,245 + CA264_02005 0.49 +0.3 462,245 + CA264_02005 0.49 +0.7 462,379 + CA264_02005 0.59 +0.2 462,392 + CA264_02005 0.60 +1.1 462,393 - CA264_02005 0.60 -0.4 462,393 - CA264_02005 0.60 -0.8 462,436 + CA264_02005 0.63 +0.4 462,437 - CA264_02005 0.63 +0.4 462,471 - CA264_02005 0.65 -0.9 462,525 + CA264_02005 0.69 +1.2 462,528 - CA264_02005 0.69 -0.9 462,528 - CA264_02005 0.69 +0.0 462,536 + CA264_02005 0.70 -0.2 462,559 + CA264_02005 0.72 -0.9 462,588 + CA264_02005 0.74 +0.9 462,602 + CA264_02005 0.75 -0.3 462,603 - CA264_02005 0.75 -0.5 462,672 - CA264_02005 0.80 +0.1 462,876 - -1.9 462,876 - -0.4 462,882 + +0.2 462,937 - -0.3 462,937 - -1.3 462,939 + +2.6 462,939 + +0.3 462,940 - -0.9 462,940 - -0.5 462,940 - +0.6 462,952 + +2.0 462,952 + +0.2 462,953 - -0.4 462,956 + +0.0 462,956 + +0.2 462,956 + +0.7 462,957 - +0.1 462,977 - -2.4 462,977 - -1.2 463,037 - -0.5 463,037 - -1.0 463,096 + +0.1 463,097 - -0.6 463,143 + +0.8 463,320 + CA264_02010 0.55 +0.1 463,323 + CA264_02010 0.56 +0.7 463,324 - CA264_02010 0.56 +0.4 463,324 - CA264_02010 0.56 +0.0 463,334 - CA264_02010 0.59 -0.0 463,348 - CA264_02010 0.63 -0.4 463,349 + CA264_02010 0.63 +1.7 463,389 + CA264_02010 0.74 +0.4 463,390 - CA264_02010 0.74 +0.1 463,400 - CA264_02010 0.77 +0.4 463,401 + CA264_02010 0.77 +1.0 463,465 - -0.4 463,505 - -0.8 463,515 + +1.0 463,516 - -0.5 463,537 + -0.2 463,537 + +0.7 463,541 + +0.6 463,542 - -0.8 463,542 - -2.1 463,561 - -0.8 463,561 - +0.3 463,563 + -0.4 463,563 + +0.9 463,564 - -1.0 463,564 - -1.2 463,564 - -1.0 463,603 + -0.2 463,611 + +0.9 463,611 + -0.6 463,612 - -1.7 463,622 - -0.1 463,622 - -1.6 463,631 + +0.9
Or see this region's nucleotide sequence