Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01935

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01925 and CA264_01930 are separated by 11 nucleotidesCA264_01930 and CA264_01935 are separated by 183 nucleotidesCA264_01935 and CA264_01940 are separated by 626 nucleotides CA264_01925: CA264_01925 - tRNA-Leu, at 448,431 to 448,514 _01925 CA264_01930: CA264_01930 - Fe-S protein assembly co-chaperone HscB, at 448,526 to 449,062 _01930 CA264_01935: CA264_01935 - DNA-binding response regulator, at 449,246 to 449,884 _01935 CA264_01940: CA264_01940 - antibiotic biosynthesis monooxygenase, at 450,511 to 450,801 _01940 Position (kb) 449 450Strain fitness (log2 ratio) -2 -1 0 1 2at 448.288 kb on - strandat 448.334 kb on + strandat 448.340 kb on + strandat 448.340 kb on + strandat 448.393 kb on + strandat 448.402 kb on + strandat 449.064 kb on + strandat 449.064 kb on + strandat 449.065 kb on - strandat 449.065 kb on - strandat 449.077 kb on - strandat 449.082 kb on - strandat 449.118 kb on + strandat 449.119 kb on - strandat 449.119 kb on - strandat 449.161 kb on - strandat 449.246 kb on - strandat 449.246 kb on - strandat 449.313 kb on + strand, within CA264_01935at 449.313 kb on + strand, within CA264_01935at 449.313 kb on + strand, within CA264_01935at 449.314 kb on - strand, within CA264_01935at 449.416 kb on + strand, within CA264_01935at 449.457 kb on + strand, within CA264_01935at 449.552 kb on + strand, within CA264_01935at 449.553 kb on - strand, within CA264_01935at 449.566 kb on - strand, within CA264_01935at 449.623 kb on + strand, within CA264_01935at 449.623 kb on + strand, within CA264_01935at 449.653 kb on + strand, within CA264_01935at 449.653 kb on + strand, within CA264_01935at 449.732 kb on - strand, within CA264_01935at 449.782 kb on + strand, within CA264_01935at 449.782 kb on + strand, within CA264_01935at 449.794 kb on + strand, within CA264_01935at 449.801 kb on - strand, within CA264_01935at 449.820 kb on + strand, within CA264_01935at 449.820 kb on + strand, within CA264_01935at 449.869 kb on - strandat 449.869 kb on - strandat 449.896 kb on - strandat 449.941 kb on + strandat 449.943 kb on + strandat 449.943 kb on + strandat 449.943 kb on + strandat 449.943 kb on + strandat 449.944 kb on - strandat 449.944 kb on - strandat 449.947 kb on + strandat 449.947 kb on + strandat 450.057 kb on - strandat 450.074 kb on + strandat 450.081 kb on - strandat 450.081 kb on - strandat 450.081 kb on - strandat 450.084 kb on + strandat 450.111 kb on + strandat 450.112 kb on - strandat 450.112 kb on - strandat 450.151 kb on + strandat 450.152 kb on - strandat 450.185 kb on + strandat 450.185 kb on + strandat 450.330 kb on - strandat 450.350 kb on + strandat 450.351 kb on - strandat 450.389 kb on - strandat 450.391 kb on - strandat 450.439 kb on + strandat 450.512 kb on + strandat 450.580 kb on + strand, within CA264_01940at 450.581 kb on - strand, within CA264_01940at 450.644 kb on + strand, within CA264_01940at 450.654 kb on - strand, within CA264_01940at 450.771 kb on + strand, within CA264_01940at 450.802 kb on - strandat 450.810 kb on + strandat 450.811 kb on - strandat 450.867 kb on + strandat 450.868 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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448,288 - -0.8
448,334 + +0.1
448,340 + +0.9
448,340 + -0.8
448,393 + -2.5
448,402 + -0.6
449,064 + +1.2
449,064 + -0.2
449,065 - -1.7
449,065 - -0.7
449,077 - +1.7
449,082 - -0.5
449,118 + +1.2
449,119 - -1.1
449,119 - +0.2
449,161 - -0.4
449,246 - -0.4
449,246 - -1.1
449,313 + CA264_01935 0.10 +1.0
449,313 + CA264_01935 0.10 -0.2
449,313 + CA264_01935 0.10 +1.3
449,314 - CA264_01935 0.11 +0.2
449,416 + CA264_01935 0.27 +0.2
449,457 + CA264_01935 0.33 +0.8
449,552 + CA264_01935 0.48 +1.6
449,553 - CA264_01935 0.48 +0.7
449,566 - CA264_01935 0.50 -0.2
449,623 + CA264_01935 0.59 +1.3
449,623 + CA264_01935 0.59 +0.6
449,653 + CA264_01935 0.64 +1.2
449,653 + CA264_01935 0.64 +2.2
449,732 - CA264_01935 0.76 +0.3
449,782 + CA264_01935 0.84 +1.6
449,782 + CA264_01935 0.84 +1.7
449,794 + CA264_01935 0.86 +1.8
449,801 - CA264_01935 0.87 +0.0
449,820 + CA264_01935 0.90 +1.1
449,820 + CA264_01935 0.90 +1.3
449,869 - -0.3
449,869 - -0.6
449,896 - +0.5
449,941 + +1.1
449,943 + +1.7
449,943 + +1.9
449,943 + +1.4
449,943 + +1.8
449,944 - +2.6
449,944 - -0.1
449,947 + +1.8
449,947 + +0.8
450,057 - +0.5
450,074 + +1.7
450,081 - +0.4
450,081 - -0.1
450,081 - -0.1
450,084 + +0.9
450,111 + +1.3
450,112 - -1.4
450,112 - -0.1
450,151 + +1.6
450,152 - +0.8
450,185 + +1.6
450,185 + +1.4
450,330 - -0.1
450,350 + -2.0
450,351 - -1.7
450,389 - -1.0
450,391 - -0.8
450,439 + -0.3
450,512 + +1.9
450,580 + CA264_01940 0.24 +0.4
450,581 - CA264_01940 0.24 -0.2
450,644 + CA264_01940 0.46 +0.2
450,654 - CA264_01940 0.49 -0.9
450,771 + CA264_01940 0.89 +0.6
450,802 - -0.4
450,810 + +1.0
450,811 - -0.4
450,867 + +0.4
450,868 - -1.4

Or see this region's nucleotide sequence