Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01400 and CA264_01405 are separated by 401 nucleotides CA264_01405 and CA264_01410 are separated by 351 nucleotides
CA264_01400: CA264_01400 - lipid-A-disaccharide synthase, at 333,373 to 334,494
_01400
CA264_01405: CA264_01405 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 334,896 to 336,119
_01405
CA264_01410: CA264_01410 - ATP-dependent Clp protease proteolytic subunit, at 336,471 to 337,172
_01410
Position (kb) 334
335
336
337 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 334.490 kb on + strand at 334.490 kb on + strand at 334.492 kb on + strand at 334.492 kb on + strand at 334.492 kb on + strand at 334.578 kb on - strand at 334.604 kb on + strand at 334.708 kb on - strand at 334.708 kb on - strand at 334.708 kb on - strand at 334.710 kb on + strand at 334.776 kb on - strand at 334.776 kb on - strand at 334.795 kb on - strand at 334.799 kb on + strand at 334.849 kb on - strand at 334.855 kb on + strand at 334.856 kb on - strand at 334.918 kb on - strand at 334.949 kb on - strand at 334.962 kb on - strand at 335.031 kb on - strand, within CA264_01405 at 335.142 kb on - strand, within CA264_01405 at 335.144 kb on - strand, within CA264_01405 at 335.328 kb on - strand, within CA264_01405 at 335.479 kb on - strand, within CA264_01405 at 335.586 kb on + strand, within CA264_01405 at 335.600 kb on - strand, within CA264_01405 at 335.631 kb on - strand, within CA264_01405 at 335.633 kb on - strand, within CA264_01405 at 335.646 kb on + strand, within CA264_01405 at 335.657 kb on + strand, within CA264_01405 at 335.658 kb on - strand, within CA264_01405 at 335.661 kb on + strand, within CA264_01405 at 335.662 kb on - strand, within CA264_01405 at 335.683 kb on - strand, within CA264_01405 at 335.703 kb on + strand, within CA264_01405 at 335.704 kb on - strand, within CA264_01405 at 335.704 kb on - strand, within CA264_01405 at 335.765 kb on - strand, within CA264_01405 at 335.795 kb on + strand, within CA264_01405 at 335.856 kb on - strand, within CA264_01405 at 335.857 kb on + strand, within CA264_01405 at 335.857 kb on + strand, within CA264_01405 at 335.858 kb on - strand, within CA264_01405 at 335.865 kb on - strand, within CA264_01405 at 335.866 kb on + strand, within CA264_01405 at 335.867 kb on - strand, within CA264_01405 at 336.073 kb on - strand at 336.330 kb on + strand at 336.351 kb on + strand at 336.451 kb on - strand at 336.457 kb on + strand at 336.458 kb on - strand at 336.460 kb on + strand at 336.462 kb on + strand at 336.462 kb on + strand at 336.463 kb on - strand at 336.465 kb on + strand at 336.465 kb on + strand at 336.472 kb on + strand at 336.764 kb on + strand, within CA264_01410 at 336.764 kb on + strand, within CA264_01410 at 336.807 kb on + strand, within CA264_01410 at 337.096 kb on + strand, within CA264_01410 at 337.096 kb on + strand, within CA264_01410
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 334,490 + +0.5 334,490 + +0.6 334,492 + +0.8 334,492 + -0.0 334,492 + -3.6 334,578 - -0.8 334,604 + -0.4 334,708 - +0.6 334,708 - +0.7 334,708 - -0.6 334,710 + +0.6 334,776 - -0.4 334,776 - +0.2 334,795 - -0.3 334,799 + +0.6 334,849 - -0.1 334,855 + -0.3 334,856 - +1.2 334,918 - +0.8 334,949 - +1.0 334,962 - +0.4 335,031 - CA264_01405 0.11 -0.3 335,142 - CA264_01405 0.20 -0.9 335,144 - CA264_01405 0.20 +0.3 335,328 - CA264_01405 0.35 +0.8 335,479 - CA264_01405 0.48 -0.1 335,586 + CA264_01405 0.56 -0.1 335,600 - CA264_01405 0.58 +0.2 335,631 - CA264_01405 0.60 +0.8 335,633 - CA264_01405 0.60 +0.6 335,646 + CA264_01405 0.61 +0.9 335,657 + CA264_01405 0.62 +0.2 335,658 - CA264_01405 0.62 -0.1 335,661 + CA264_01405 0.62 -1.3 335,662 - CA264_01405 0.63 +1.0 335,683 - CA264_01405 0.64 +0.5 335,703 + CA264_01405 0.66 +0.5 335,704 - CA264_01405 0.66 +0.6 335,704 - CA264_01405 0.66 +0.1 335,765 - CA264_01405 0.71 +0.6 335,795 + CA264_01405 0.73 +0.3 335,856 - CA264_01405 0.78 +0.2 335,857 + CA264_01405 0.79 -0.3 335,857 + CA264_01405 0.79 -0.9 335,858 - CA264_01405 0.79 +1.0 335,865 - CA264_01405 0.79 -0.1 335,866 + CA264_01405 0.79 +0.2 335,867 - CA264_01405 0.79 +0.1 336,073 - +0.3 336,330 + +0.7 336,351 + +0.9 336,451 - +0.1 336,457 + +0.7 336,458 - +0.6 336,460 + -1.1 336,462 + +0.4 336,462 + +0.2 336,463 - +0.0 336,465 + +0.7 336,465 + +0.8 336,472 + +0.4 336,764 + CA264_01410 0.42 -1.8 336,764 + CA264_01410 0.42 -1.0 336,807 + CA264_01410 0.48 -2.4 337,096 + CA264_01410 0.89 -2.6 337,096 + CA264_01410 0.89 -1.4
Or see this region's nucleotide sequence