Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00945

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00930 and CA264_00935 are separated by 103 nucleotidesCA264_00935 and CA264_00940 are separated by 127 nucleotidesCA264_00940 and CA264_00945 are separated by 89 nucleotidesCA264_00945 and CA264_00950 are separated by 115 nucleotidesCA264_00950 and CA264_00955 are separated by 256 nucleotides CA264_00930: CA264_00930 - phosphorylase, at 199,188 to 200,045 _00930 CA264_00935: CA264_00935 - hypothetical protein, at 200,149 to 200,448 _00935 CA264_00940: CA264_00940 - hypothetical protein, at 200,576 to 200,875 _00940 CA264_00945: CA264_00945 - acyl-CoA reductase, at 200,965 to 201,975 _00945 CA264_00950: CA264_00950 - ferredoxin, at 202,091 to 202,441 _00950 CA264_00955: CA264_00955 - valine--tRNA ligase, at 202,698 to 205,331 _00955 Position (kb) 200 201 202Strain fitness (log2 ratio) -2 -1 0 1 2at 200.086 kb on + strandat 200.087 kb on - strandat 200.135 kb on + strandat 200.157 kb on - strandat 200.157 kb on - strandat 200.157 kb on - strandat 200.253 kb on + strand, within CA264_00935at 200.336 kb on + strand, within CA264_00935at 200.336 kb on + strand, within CA264_00935at 200.472 kb on + strandat 200.474 kb on + strandat 200.475 kb on - strandat 200.475 kb on - strandat 200.476 kb on + strandat 200.578 kb on - strandat 200.600 kb on - strandat 200.767 kb on + strand, within CA264_00940at 200.767 kb on + strand, within CA264_00940at 200.887 kb on + strandat 200.915 kb on + strandat 200.959 kb on - strandat 201.261 kb on - strand, within CA264_00945at 201.498 kb on - strand, within CA264_00945at 201.498 kb on - strand, within CA264_00945at 201.602 kb on - strand, within CA264_00945at 201.602 kb on - strand, within CA264_00945at 201.671 kb on + strand, within CA264_00945at 201.760 kb on - strand, within CA264_00945at 201.858 kb on + strand, within CA264_00945at 201.915 kb on + strandat 201.982 kb on - strandat 202.003 kb on - strandat 202.440 kb on - strandat 202.551 kb on - strandat 202.559 kb on + strandat 202.560 kb on - strandat 202.598 kb on + strandat 202.636 kb on + strandat 202.637 kb on - strandat 202.640 kb on - strandat 202.733 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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200,086 + +0.1
200,087 - -2.2
200,135 + -2.7
200,157 - +0.0
200,157 - +0.8
200,157 - +0.5
200,253 + CA264_00935 0.35 +0.3
200,336 + CA264_00935 0.62 -0.2
200,336 + CA264_00935 0.62 -0.3
200,472 + -0.5
200,474 + +0.9
200,475 - +0.1
200,475 - -0.1
200,476 + -0.4
200,578 - -0.8
200,600 - -0.2
200,767 + CA264_00940 0.64 +0.1
200,767 + CA264_00940 0.64 +0.5
200,887 + +0.6
200,915 + +1.2
200,959 - -0.2
201,261 - CA264_00945 0.29 -0.8
201,498 - CA264_00945 0.53 -0.6
201,498 - CA264_00945 0.53 -0.7
201,602 - CA264_00945 0.63 -0.9
201,602 - CA264_00945 0.63 -1.4
201,671 + CA264_00945 0.70 -1.8
201,760 - CA264_00945 0.79 -0.8
201,858 + CA264_00945 0.88 +1.3
201,915 + +1.0
201,982 - -0.7
202,003 - +0.0
202,440 - -0.3
202,551 - +0.6
202,559 + +0.9
202,560 - +1.7
202,598 + -1.0
202,636 + +1.0
202,637 - +0.6
202,640 - +0.8
202,733 - +2.1

Or see this region's nucleotide sequence