Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00665 and CA264_00670 are separated by 184 nucleotides CA264_00670 and CA264_00675 are separated by 49 nucleotides CA264_00675 and CA264_00680 are separated by 448 nucleotides
CA264_00665: CA264_00665 - RNA polymerase subunit sigma-24, at 146,769 to 147,377
_00665
CA264_00670: CA264_00670 - hypothetical protein, at 147,562 to 147,783
_00670
CA264_00675: CA264_00675 - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 147,833 to 148,459
_00675
CA264_00680: CA264_00680 - alpha/beta hydrolase, at 148,908 to 149,861
_00680
Position (kb)
147
148
149 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 146.834 kb on - strand, within CA264_00665 at 146.874 kb on - strand, within CA264_00665 at 146.878 kb on - strand, within CA264_00665 at 146.981 kb on + strand, within CA264_00665 at 146.981 kb on + strand, within CA264_00665 at 146.982 kb on - strand, within CA264_00665 at 146.982 kb on - strand, within CA264_00665 at 146.982 kb on - strand, within CA264_00665 at 146.982 kb on - strand, within CA264_00665 at 147.008 kb on + strand, within CA264_00665 at 147.009 kb on - strand, within CA264_00665 at 147.009 kb on - strand, within CA264_00665 at 147.041 kb on + strand, within CA264_00665 at 147.188 kb on + strand, within CA264_00665 at 147.189 kb on - strand, within CA264_00665 at 147.223 kb on - strand, within CA264_00665 at 147.343 kb on - strand at 147.396 kb on + strand at 147.397 kb on - strand at 147.397 kb on - strand at 147.448 kb on - strand at 147.449 kb on + strand at 147.449 kb on + strand at 147.450 kb on - strand at 147.450 kb on - strand at 147.453 kb on + strand at 147.453 kb on + strand at 147.454 kb on - strand at 147.478 kb on + strand at 147.491 kb on + strand at 147.492 kb on - strand at 147.503 kb on + strand at 147.504 kb on - strand at 147.527 kb on + strand at 147.527 kb on + strand at 147.528 kb on - strand at 147.529 kb on + strand at 147.557 kb on + strand at 147.558 kb on - strand at 147.558 kb on - strand at 147.558 kb on - strand at 147.558 kb on - strand at 147.559 kb on + strand at 147.560 kb on - strand at 147.560 kb on - strand at 147.560 kb on - strand at 147.573 kb on - strand at 147.585 kb on + strand, within CA264_00670 at 147.585 kb on + strand, within CA264_00670 at 147.585 kb on + strand, within CA264_00670 at 147.586 kb on - strand, within CA264_00670 at 147.587 kb on + strand, within CA264_00670 at 147.587 kb on + strand, within CA264_00670 at 147.588 kb on - strand, within CA264_00670 at 147.593 kb on + strand, within CA264_00670 at 147.593 kb on + strand, within CA264_00670 at 147.593 kb on + strand, within CA264_00670 at 147.594 kb on - strand, within CA264_00670 at 147.594 kb on - strand, within CA264_00670 at 147.594 kb on - strand, within CA264_00670 at 147.594 kb on - strand, within CA264_00670 at 147.594 kb on - strand, within CA264_00670 at 147.599 kb on + strand, within CA264_00670 at 147.610 kb on + strand, within CA264_00670 at 147.627 kb on + strand, within CA264_00670 at 147.657 kb on + strand, within CA264_00670 at 147.667 kb on + strand, within CA264_00670 at 147.730 kb on - strand, within CA264_00670 at 147.730 kb on - strand, within CA264_00670 at 147.732 kb on - strand, within CA264_00670 at 147.732 kb on - strand, within CA264_00670 at 147.732 kb on - strand, within CA264_00670 at 147.732 kb on - strand, within CA264_00670 at 147.782 kb on - strand at 147.796 kb on - strand at 147.796 kb on - strand at 147.803 kb on - strand at 147.817 kb on - strand at 147.823 kb on + strand at 147.912 kb on - strand, within CA264_00675 at 147.912 kb on - strand, within CA264_00675 at 148.000 kb on - strand, within CA264_00675 at 148.013 kb on - strand, within CA264_00675 at 148.013 kb on - strand, within CA264_00675 at 148.220 kb on + strand, within CA264_00675 at 148.229 kb on - strand, within CA264_00675 at 148.322 kb on + strand, within CA264_00675 at 148.323 kb on - strand, within CA264_00675 at 148.370 kb on - strand, within CA264_00675 at 148.372 kb on + strand, within CA264_00675 at 148.389 kb on + strand, within CA264_00675 at 148.457 kb on + strand at 148.478 kb on + strand at 148.479 kb on - strand at 148.507 kb on + strand at 148.507 kb on + strand at 148.508 kb on - strand at 148.511 kb on + strand at 148.512 kb on - strand at 148.738 kb on + strand at 148.738 kb on + strand at 148.749 kb on + strand at 148.792 kb on + strand at 148.793 kb on - strand at 148.793 kb on - strand at 148.794 kb on + strand at 148.794 kb on + strand at 148.795 kb on - strand at 148.795 kb on - strand at 148.795 kb on - strand at 148.795 kb on - strand at 148.798 kb on + strand at 148.799 kb on - strand at 148.799 kb on - strand at 148.893 kb on - strand at 148.909 kb on + strand at 149.024 kb on - strand, within CA264_00680 at 149.150 kb on - strand, within CA264_00680 at 149.150 kb on - strand, within CA264_00680 at 149.152 kb on + strand, within CA264_00680 at 149.152 kb on + strand, within CA264_00680 at 149.231 kb on - strand, within CA264_00680 at 149.257 kb on + strand, within CA264_00680 at 149.258 kb on - strand, within CA264_00680 at 149.258 kb on - strand, within CA264_00680 at 149.314 kb on + strand, within CA264_00680 at 149.314 kb on + strand, within CA264_00680 at 149.315 kb on - strand, within CA264_00680 at 149.316 kb on + strand, within CA264_00680 at 149.317 kb on - strand, within CA264_00680 at 149.419 kb on + strand, within CA264_00680 at 149.420 kb on - strand, within CA264_00680
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 146,834 - CA264_00665 0.11 -1.3 146,874 - CA264_00665 0.17 -0.9 146,878 - CA264_00665 0.18 -1.3 146,981 + CA264_00665 0.35 -0.4 146,981 + CA264_00665 0.35 +0.1 146,982 - CA264_00665 0.35 -0.6 146,982 - CA264_00665 0.35 -1.8 146,982 - CA264_00665 0.35 -2.4 146,982 - CA264_00665 0.35 -1.3 147,008 + CA264_00665 0.39 -0.1 147,009 - CA264_00665 0.39 -1.8 147,009 - CA264_00665 0.39 -0.5 147,041 + CA264_00665 0.45 -0.2 147,188 + CA264_00665 0.69 -0.5 147,189 - CA264_00665 0.69 -1.9 147,223 - CA264_00665 0.75 -1.0 147,343 - -0.8 147,396 + +0.3 147,397 - -1.6 147,397 - -0.5 147,448 - -0.3 147,449 + -0.0 147,449 + +0.4 147,450 - -1.0 147,450 - -0.8 147,453 + +0.1 147,453 + -0.4 147,454 - -0.1 147,478 + +0.5 147,491 + -0.5 147,492 - +0.9 147,503 + +1.3 147,504 - -0.3 147,527 + -1.2 147,527 + -0.2 147,528 - -0.8 147,529 + -0.5 147,557 + +0.9 147,558 - -0.8 147,558 - -0.8 147,558 - -1.2 147,558 - -0.6 147,559 + +1.0 147,560 - +0.5 147,560 - +0.6 147,560 - -2.2 147,573 - -0.6 147,585 + CA264_00670 0.10 -0.2 147,585 + CA264_00670 0.10 -0.8 147,585 + CA264_00670 0.10 +0.7 147,586 - CA264_00670 0.11 -0.2 147,587 + CA264_00670 0.11 -0.5 147,587 + CA264_00670 0.11 -0.3 147,588 - CA264_00670 0.12 +0.1 147,593 + CA264_00670 0.14 +0.2 147,593 + CA264_00670 0.14 -0.0 147,593 + CA264_00670 0.14 -0.2 147,594 - CA264_00670 0.14 -0.7 147,594 - CA264_00670 0.14 +0.3 147,594 - CA264_00670 0.14 +0.3 147,594 - CA264_00670 0.14 -1.5 147,594 - CA264_00670 0.14 -1.1 147,599 + CA264_00670 0.17 -0.3 147,610 + CA264_00670 0.22 +0.1 147,627 + CA264_00670 0.29 -0.5 147,657 + CA264_00670 0.43 +0.3 147,667 + CA264_00670 0.47 -0.2 147,730 - CA264_00670 0.76 -1.0 147,730 - CA264_00670 0.76 -2.4 147,732 - CA264_00670 0.77 -2.2 147,732 - CA264_00670 0.77 -1.0 147,732 - CA264_00670 0.77 -0.9 147,732 - CA264_00670 0.77 -1.3 147,782 - -1.3 147,796 - -0.9 147,796 - -1.2 147,803 - +0.1 147,817 - -0.2 147,823 + +0.8 147,912 - CA264_00675 0.13 +1.2 147,912 - CA264_00675 0.13 +1.3 148,000 - CA264_00675 0.27 +0.8 148,013 - CA264_00675 0.29 -0.3 148,013 - CA264_00675 0.29 +0.3 148,220 + CA264_00675 0.62 +0.6 148,229 - CA264_00675 0.63 +0.3 148,322 + CA264_00675 0.78 +1.1 148,323 - CA264_00675 0.78 +0.7 148,370 - CA264_00675 0.86 +1.0 148,372 + CA264_00675 0.86 -0.5 148,389 + CA264_00675 0.89 +1.9 148,457 + +0.1 148,478 + +0.3 148,479 - -0.8 148,507 + +1.2 148,507 + +0.8 148,508 - -0.2 148,511 + -0.5 148,512 - -0.2 148,738 + +0.6 148,738 + -0.3 148,749 + +0.5 148,792 + -0.3 148,793 - -0.4 148,793 - -0.6 148,794 + -2.1 148,794 + +0.3 148,795 - -0.6 148,795 - -0.0 148,795 - +1.9 148,795 - -0.1 148,798 + +0.2 148,799 - -0.6 148,799 - -1.3 148,893 - -0.4 148,909 + +1.3 149,024 - CA264_00680 0.12 -0.4 149,150 - CA264_00680 0.25 -0.4 149,150 - CA264_00680 0.25 -0.8 149,152 + CA264_00680 0.26 +0.1 149,152 + CA264_00680 0.26 -0.4 149,231 - CA264_00680 0.34 +1.0 149,257 + CA264_00680 0.37 -0.0 149,258 - CA264_00680 0.37 +0.2 149,258 - CA264_00680 0.37 +0.6 149,314 + CA264_00680 0.43 -1.1 149,314 + CA264_00680 0.43 +0.4 149,315 - CA264_00680 0.43 -0.4 149,316 + CA264_00680 0.43 +0.6 149,317 - CA264_00680 0.43 -0.3 149,419 + CA264_00680 0.54 +0.0 149,420 - CA264_00680 0.54 -0.6
Or see this region's nucleotide sequence