Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00540

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00530 and CA264_00535 are separated by 101 nucleotidesCA264_00535 and CA264_00540 are separated by 201 nucleotidesCA264_00540 and CA264_00545 are separated by 215 nucleotidesCA264_00545 and CA264_00550 are separated by 106 nucleotides CA264_00530: CA264_00530 - hypothetical protein, at 119,074 to 119,619 _00530 CA264_00535: CA264_00535 - hypothetical protein, at 119,721 to 120,290 _00535 CA264_00540: CA264_00540 - translational GTPase TypA, at 120,492 to 122,300 _00540 CA264_00545: CA264_00545 - peptide-methionine (R)-S-oxide reductase, at 122,516 to 123,064 _00545 CA264_00550: CA264_00550 - heme oxygenase, at 123,171 to 123,947 _00550 Position (kb) 120 121 122 123Strain fitness (log2 ratio) -2 -1 0 1 2at 119.539 kb on - strand, within CA264_00530at 119.541 kb on + strand, within CA264_00530at 119.542 kb on - strand, within CA264_00530at 119.542 kb on - strand, within CA264_00530at 119.551 kb on + strand, within CA264_00530at 119.572 kb on + strandat 119.584 kb on + strandat 119.596 kb on + strandat 119.634 kb on + strandat 119.722 kb on + strandat 119.759 kb on + strandat 119.759 kb on + strandat 119.808 kb on - strand, within CA264_00535at 119.872 kb on + strand, within CA264_00535at 119.872 kb on + strand, within CA264_00535at 119.873 kb on - strand, within CA264_00535at 119.894 kb on + strand, within CA264_00535at 119.968 kb on + strand, within CA264_00535at 119.969 kb on - strand, within CA264_00535at 119.969 kb on - strand, within CA264_00535at 119.991 kb on + strand, within CA264_00535at 119.991 kb on + strand, within CA264_00535at 119.992 kb on - strand, within CA264_00535at 120.019 kb on + strand, within CA264_00535at 120.019 kb on + strand, within CA264_00535at 120.020 kb on - strand, within CA264_00535at 120.023 kb on - strand, within CA264_00535at 120.024 kb on + strand, within CA264_00535at 120.024 kb on + strand, within CA264_00535at 120.080 kb on + strand, within CA264_00535at 120.080 kb on + strand, within CA264_00535at 120.081 kb on - strand, within CA264_00535at 120.081 kb on - strand, within CA264_00535at 120.082 kb on + strand, within CA264_00535at 120.083 kb on - strand, within CA264_00535at 120.083 kb on - strand, within CA264_00535at 120.099 kb on + strand, within CA264_00535at 120.190 kb on - strand, within CA264_00535at 120.190 kb on - strand, within CA264_00535at 120.191 kb on + strand, within CA264_00535at 120.191 kb on + strand, within CA264_00535at 120.224 kb on + strand, within CA264_00535at 120.242 kb on + strandat 120.242 kb on + strandat 120.261 kb on + strandat 120.262 kb on - strandat 120.262 kb on - strandat 120.351 kb on + strandat 120.372 kb on + strandat 120.373 kb on - strandat 120.380 kb on + strandat 120.381 kb on - strandat 120.454 kb on - strandat 120.493 kb on + strandat 120.566 kb on + strandat 120.602 kb on - strandat 120.757 kb on + strand, within CA264_00540at 120.758 kb on - strand, within CA264_00540at 120.759 kb on + strand, within CA264_00540at 120.760 kb on - strand, within CA264_00540at 120.765 kb on + strand, within CA264_00540at 120.766 kb on - strand, within CA264_00540at 120.766 kb on - strand, within CA264_00540at 120.766 kb on - strand, within CA264_00540at 120.786 kb on + strand, within CA264_00540at 120.817 kb on + strand, within CA264_00540at 120.818 kb on - strand, within CA264_00540at 120.818 kb on - strand, within CA264_00540at 121.062 kb on + strand, within CA264_00540at 121.093 kb on - strand, within CA264_00540at 121.142 kb on - strand, within CA264_00540at 121.142 kb on - strand, within CA264_00540at 121.147 kb on - strand, within CA264_00540at 121.410 kb on - strand, within CA264_00540at 121.595 kb on + strand, within CA264_00540at 121.666 kb on + strand, within CA264_00540at 121.802 kb on + strand, within CA264_00540at 121.821 kb on - strand, within CA264_00540at 121.857 kb on - strand, within CA264_00540at 121.914 kb on + strand, within CA264_00540at 121.915 kb on - strand, within CA264_00540at 121.940 kb on + strand, within CA264_00540at 121.961 kb on + strand, within CA264_00540at 122.111 kb on - strand, within CA264_00540at 122.353 kb on - strandat 122.512 kb on - strandat 122.516 kb on - strandat 122.643 kb on + strand, within CA264_00545at 122.644 kb on - strand, within CA264_00545at 122.644 kb on - strand, within CA264_00545at 122.644 kb on - strand, within CA264_00545at 122.804 kb on + strand, within CA264_00545at 122.805 kb on - strand, within CA264_00545at 123.072 kb on + strandat 123.093 kb on - strandat 123.141 kb on + strandat 123.143 kb on + strandat 123.151 kb on + strandat 123.151 kb on + strandat 123.151 kb on + strandat 123.151 kb on + strandat 123.151 kb on + strandat 123.151 kb on + strandat 123.152 kb on - strandat 123.152 kb on - strandat 123.184 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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119,539 - CA264_00530 0.85 -0.1
119,541 + CA264_00530 0.86 -0.7
119,542 - CA264_00530 0.86 +0.3
119,542 - CA264_00530 0.86 +0.5
119,551 + CA264_00530 0.87 -1.8
119,572 + -0.0
119,584 + -0.6
119,596 + +0.6
119,634 + +0.3
119,722 + -0.8
119,759 + -0.2
119,759 + -1.2
119,808 - CA264_00535 0.15 +0.2
119,872 + CA264_00535 0.26 +0.6
119,872 + CA264_00535 0.26 +0.5
119,873 - CA264_00535 0.27 -0.2
119,894 + CA264_00535 0.30 +0.6
119,968 + CA264_00535 0.43 +0.4
119,969 - CA264_00535 0.44 -0.5
119,969 - CA264_00535 0.44 -0.5
119,991 + CA264_00535 0.47 +0.2
119,991 + CA264_00535 0.47 -0.0
119,992 - CA264_00535 0.48 -0.2
120,019 + CA264_00535 0.52 +0.0
120,019 + CA264_00535 0.52 -0.1
120,020 - CA264_00535 0.52 +0.5
120,023 - CA264_00535 0.53 +0.0
120,024 + CA264_00535 0.53 +0.1
120,024 + CA264_00535 0.53 -0.2
120,080 + CA264_00535 0.63 -0.8
120,080 + CA264_00535 0.63 -0.1
120,081 - CA264_00535 0.63 -0.3
120,081 - CA264_00535 0.63 -0.2
120,082 + CA264_00535 0.63 +0.2
120,083 - CA264_00535 0.64 -0.8
120,083 - CA264_00535 0.64 +0.1
120,099 + CA264_00535 0.66 +1.6
120,190 - CA264_00535 0.82 -0.3
120,190 - CA264_00535 0.82 -0.3
120,191 + CA264_00535 0.82 +0.4
120,191 + CA264_00535 0.82 +1.0
120,224 + CA264_00535 0.88 +0.4
120,242 + +0.8
120,242 + +1.4
120,261 + +1.3
120,262 - +0.1
120,262 - +1.5
120,351 + +0.3
120,372 + -0.8
120,373 - +0.0
120,380 + +0.1
120,381 - -0.2
120,454 - -0.1
120,493 + -2.5
120,566 + +2.0
120,602 - +0.5
120,757 + CA264_00540 0.15 +0.9
120,758 - CA264_00540 0.15 +0.0
120,759 + CA264_00540 0.15 -0.1
120,760 - CA264_00540 0.15 +0.8
120,765 + CA264_00540 0.15 +0.3
120,766 - CA264_00540 0.15 +0.1
120,766 - CA264_00540 0.15 +0.5
120,766 - CA264_00540 0.15 +0.3
120,786 + CA264_00540 0.16 -0.7
120,817 + CA264_00540 0.18 -0.0
120,818 - CA264_00540 0.18 +0.1
120,818 - CA264_00540 0.18 +0.7
121,062 + CA264_00540 0.32 +0.0
121,093 - CA264_00540 0.33 -1.1
121,142 - CA264_00540 0.36 +0.7
121,142 - CA264_00540 0.36 +1.2
121,147 - CA264_00540 0.36 +0.4
121,410 - CA264_00540 0.51 -0.1
121,595 + CA264_00540 0.61 +0.2
121,666 + CA264_00540 0.65 +0.3
121,802 + CA264_00540 0.72 +0.5
121,821 - CA264_00540 0.73 +0.8
121,857 - CA264_00540 0.75 +0.1
121,914 + CA264_00540 0.79 -0.0
121,915 - CA264_00540 0.79 +0.3
121,940 + CA264_00540 0.80 +0.2
121,961 + CA264_00540 0.81 +0.3
122,111 - CA264_00540 0.89 +0.1
122,353 - +1.2
122,512 - +0.6
122,516 - +0.0
122,643 + CA264_00545 0.23 +0.5
122,644 - CA264_00545 0.23 -2.0
122,644 - CA264_00545 0.23 +0.8
122,644 - CA264_00545 0.23 -0.0
122,804 + CA264_00545 0.52 +1.2
122,805 - CA264_00545 0.53 +0.8
123,072 + +0.6
123,093 - -0.4
123,141 + +0.3
123,143 + +0.9
123,151 + -0.5
123,151 + +0.4
123,151 + +0.4
123,151 + -0.3
123,151 + +0.1
123,151 + +0.3
123,152 - +0.6
123,152 - -0.7
123,184 + +0.1

Or see this region's nucleotide sequence