Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00530 and CA264_00535 are separated by 101 nucleotides CA264_00535 and CA264_00540 are separated by 201 nucleotides CA264_00540 and CA264_00545 are separated by 215 nucleotides CA264_00545 and CA264_00550 are separated by 106 nucleotides
CA264_00530: CA264_00530 - hypothetical protein, at 119,074 to 119,619
_00530
CA264_00535: CA264_00535 - hypothetical protein, at 119,721 to 120,290
_00535
CA264_00540: CA264_00540 - translational GTPase TypA, at 120,492 to 122,300
_00540
CA264_00545: CA264_00545 - peptide-methionine (R)-S-oxide reductase, at 122,516 to 123,064
_00545
CA264_00550: CA264_00550 - heme oxygenase, at 123,171 to 123,947
_00550
Position (kb)
120
121
122
123 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 119.539 kb on - strand, within CA264_00530 at 119.541 kb on + strand, within CA264_00530 at 119.542 kb on - strand, within CA264_00530 at 119.542 kb on - strand, within CA264_00530 at 119.551 kb on + strand, within CA264_00530 at 119.572 kb on + strand at 119.584 kb on + strand at 119.596 kb on + strand at 119.634 kb on + strand at 119.722 kb on + strand at 119.759 kb on + strand at 119.759 kb on + strand at 119.808 kb on - strand, within CA264_00535 at 119.872 kb on + strand, within CA264_00535 at 119.872 kb on + strand, within CA264_00535 at 119.873 kb on - strand, within CA264_00535 at 119.894 kb on + strand, within CA264_00535 at 119.968 kb on + strand, within CA264_00535 at 119.969 kb on - strand, within CA264_00535 at 119.969 kb on - strand, within CA264_00535 at 119.991 kb on + strand, within CA264_00535 at 119.991 kb on + strand, within CA264_00535 at 119.992 kb on - strand, within CA264_00535 at 120.019 kb on + strand, within CA264_00535 at 120.019 kb on + strand, within CA264_00535 at 120.020 kb on - strand, within CA264_00535 at 120.023 kb on - strand, within CA264_00535 at 120.024 kb on + strand, within CA264_00535 at 120.024 kb on + strand, within CA264_00535 at 120.080 kb on + strand, within CA264_00535 at 120.080 kb on + strand, within CA264_00535 at 120.081 kb on - strand, within CA264_00535 at 120.081 kb on - strand, within CA264_00535 at 120.082 kb on + strand, within CA264_00535 at 120.083 kb on - strand, within CA264_00535 at 120.083 kb on - strand, within CA264_00535 at 120.099 kb on + strand, within CA264_00535 at 120.190 kb on - strand, within CA264_00535 at 120.190 kb on - strand, within CA264_00535 at 120.191 kb on + strand, within CA264_00535 at 120.191 kb on + strand, within CA264_00535 at 120.224 kb on + strand, within CA264_00535 at 120.242 kb on + strand at 120.242 kb on + strand at 120.261 kb on + strand at 120.262 kb on - strand at 120.262 kb on - strand at 120.351 kb on + strand at 120.372 kb on + strand at 120.373 kb on - strand at 120.380 kb on + strand at 120.381 kb on - strand at 120.454 kb on - strand at 120.493 kb on + strand at 120.566 kb on + strand at 120.602 kb on - strand at 120.757 kb on + strand, within CA264_00540 at 120.758 kb on - strand, within CA264_00540 at 120.759 kb on + strand, within CA264_00540 at 120.760 kb on - strand, within CA264_00540 at 120.765 kb on + strand, within CA264_00540 at 120.766 kb on - strand, within CA264_00540 at 120.766 kb on - strand, within CA264_00540 at 120.766 kb on - strand, within CA264_00540 at 120.786 kb on + strand, within CA264_00540 at 120.817 kb on + strand, within CA264_00540 at 120.818 kb on - strand, within CA264_00540 at 120.818 kb on - strand, within CA264_00540 at 121.062 kb on + strand, within CA264_00540 at 121.093 kb on - strand, within CA264_00540 at 121.142 kb on - strand, within CA264_00540 at 121.142 kb on - strand, within CA264_00540 at 121.147 kb on - strand, within CA264_00540 at 121.410 kb on - strand, within CA264_00540 at 121.595 kb on + strand, within CA264_00540 at 121.666 kb on + strand, within CA264_00540 at 121.802 kb on + strand, within CA264_00540 at 121.821 kb on - strand, within CA264_00540 at 121.857 kb on - strand, within CA264_00540 at 121.914 kb on + strand, within CA264_00540 at 121.915 kb on - strand, within CA264_00540 at 121.940 kb on + strand, within CA264_00540 at 121.961 kb on + strand, within CA264_00540 at 122.111 kb on - strand, within CA264_00540 at 122.353 kb on - strand at 122.512 kb on - strand at 122.516 kb on - strand at 122.643 kb on + strand, within CA264_00545 at 122.644 kb on - strand, within CA264_00545 at 122.644 kb on - strand, within CA264_00545 at 122.644 kb on - strand, within CA264_00545 at 122.804 kb on + strand, within CA264_00545 at 122.805 kb on - strand, within CA264_00545 at 123.072 kb on + strand at 123.093 kb on - strand at 123.141 kb on + strand at 123.143 kb on + strand at 123.151 kb on + strand at 123.151 kb on + strand at 123.151 kb on + strand at 123.151 kb on + strand at 123.151 kb on + strand at 123.151 kb on + strand at 123.152 kb on - strand at 123.152 kb on - strand at 123.184 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 119,539 - CA264_00530 0.85 -0.1 119,541 + CA264_00530 0.86 -0.7 119,542 - CA264_00530 0.86 +0.3 119,542 - CA264_00530 0.86 +0.5 119,551 + CA264_00530 0.87 -1.8 119,572 + -0.0 119,584 + -0.6 119,596 + +0.6 119,634 + +0.3 119,722 + -0.8 119,759 + -0.2 119,759 + -1.2 119,808 - CA264_00535 0.15 +0.2 119,872 + CA264_00535 0.26 +0.6 119,872 + CA264_00535 0.26 +0.5 119,873 - CA264_00535 0.27 -0.2 119,894 + CA264_00535 0.30 +0.6 119,968 + CA264_00535 0.43 +0.4 119,969 - CA264_00535 0.44 -0.5 119,969 - CA264_00535 0.44 -0.5 119,991 + CA264_00535 0.47 +0.2 119,991 + CA264_00535 0.47 -0.0 119,992 - CA264_00535 0.48 -0.2 120,019 + CA264_00535 0.52 +0.0 120,019 + CA264_00535 0.52 -0.1 120,020 - CA264_00535 0.52 +0.5 120,023 - CA264_00535 0.53 +0.0 120,024 + CA264_00535 0.53 +0.1 120,024 + CA264_00535 0.53 -0.2 120,080 + CA264_00535 0.63 -0.8 120,080 + CA264_00535 0.63 -0.1 120,081 - CA264_00535 0.63 -0.3 120,081 - CA264_00535 0.63 -0.2 120,082 + CA264_00535 0.63 +0.2 120,083 - CA264_00535 0.64 -0.8 120,083 - CA264_00535 0.64 +0.1 120,099 + CA264_00535 0.66 +1.6 120,190 - CA264_00535 0.82 -0.3 120,190 - CA264_00535 0.82 -0.3 120,191 + CA264_00535 0.82 +0.4 120,191 + CA264_00535 0.82 +1.0 120,224 + CA264_00535 0.88 +0.4 120,242 + +0.8 120,242 + +1.4 120,261 + +1.3 120,262 - +0.1 120,262 - +1.5 120,351 + +0.3 120,372 + -0.8 120,373 - +0.0 120,380 + +0.1 120,381 - -0.2 120,454 - -0.1 120,493 + -2.5 120,566 + +2.0 120,602 - +0.5 120,757 + CA264_00540 0.15 +0.9 120,758 - CA264_00540 0.15 +0.0 120,759 + CA264_00540 0.15 -0.1 120,760 - CA264_00540 0.15 +0.8 120,765 + CA264_00540 0.15 +0.3 120,766 - CA264_00540 0.15 +0.1 120,766 - CA264_00540 0.15 +0.5 120,766 - CA264_00540 0.15 +0.3 120,786 + CA264_00540 0.16 -0.7 120,817 + CA264_00540 0.18 -0.0 120,818 - CA264_00540 0.18 +0.1 120,818 - CA264_00540 0.18 +0.7 121,062 + CA264_00540 0.32 +0.0 121,093 - CA264_00540 0.33 -1.1 121,142 - CA264_00540 0.36 +0.7 121,142 - CA264_00540 0.36 +1.2 121,147 - CA264_00540 0.36 +0.4 121,410 - CA264_00540 0.51 -0.1 121,595 + CA264_00540 0.61 +0.2 121,666 + CA264_00540 0.65 +0.3 121,802 + CA264_00540 0.72 +0.5 121,821 - CA264_00540 0.73 +0.8 121,857 - CA264_00540 0.75 +0.1 121,914 + CA264_00540 0.79 -0.0 121,915 - CA264_00540 0.79 +0.3 121,940 + CA264_00540 0.80 +0.2 121,961 + CA264_00540 0.81 +0.3 122,111 - CA264_00540 0.89 +0.1 122,353 - +1.2 122,512 - +0.6 122,516 - +0.0 122,643 + CA264_00545 0.23 +0.5 122,644 - CA264_00545 0.23 -2.0 122,644 - CA264_00545 0.23 +0.8 122,644 - CA264_00545 0.23 -0.0 122,804 + CA264_00545 0.52 +1.2 122,805 - CA264_00545 0.53 +0.8 123,072 + +0.6 123,093 - -0.4 123,141 + +0.3 123,143 + +0.9 123,151 + -0.5 123,151 + +0.4 123,151 + +0.4 123,151 + -0.3 123,151 + +0.1 123,151 + +0.3 123,152 - +0.6 123,152 - -0.7 123,184 + +0.1
Or see this region's nucleotide sequence