Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00350 and CA264_00355 are separated by 76 nucleotides CA264_00355 and CA264_00360 are separated by 208 nucleotides CA264_00360 and CA264_00365 are separated by 5 nucleotides
CA264_00350: CA264_00350 - hypothetical protein, at 79,944 to 80,618
_00350
CA264_00355: CA264_00355 - short-chain dehydrogenase, at 80,695 to 81,396
_00355
CA264_00360: CA264_00360 - ribosome small subunit-dependent GTPase A, at 81,605 to 82,528
_00360
CA264_00365: CA264_00365 - 3-deoxy-D-manno-octulosonic acid transferase, at 82,534 to 83,775
_00365
Position (kb) 81
82
83 Strain fitness (log2 ratio) -1
0
1
2
3 at 80.658 kb on + strand at 80.696 kb on + strand at 80.852 kb on - strand, within CA264_00355 at 80.876 kb on - strand, within CA264_00355 at 80.888 kb on + strand, within CA264_00355 at 80.889 kb on - strand, within CA264_00355 at 80.952 kb on - strand, within CA264_00355 at 81.083 kb on + strand, within CA264_00355 at 81.083 kb on + strand, within CA264_00355 at 81.083 kb on + strand, within CA264_00355 at 81.083 kb on + strand, within CA264_00355 at 81.083 kb on + strand, within CA264_00355 at 81.083 kb on + strand, within CA264_00355 at 81.084 kb on - strand, within CA264_00355 at 81.192 kb on + strand, within CA264_00355 at 81.193 kb on - strand, within CA264_00355 at 81.205 kb on + strand, within CA264_00355 at 81.213 kb on - strand, within CA264_00355 at 81.250 kb on + strand, within CA264_00355 at 81.301 kb on + strand, within CA264_00355 at 81.376 kb on - strand at 81.399 kb on + strand at 81.488 kb on - strand at 81.543 kb on + strand at 81.544 kb on - strand at 81.596 kb on - strand at 81.607 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 80,658 + +0.8 80,696 + +0.7 80,852 - CA264_00355 0.22 +1.4 80,876 - CA264_00355 0.26 +0.2 80,888 + CA264_00355 0.27 +2.9 80,889 - CA264_00355 0.28 +1.1 80,952 - CA264_00355 0.37 -0.2 81,083 + CA264_00355 0.55 +1.2 81,083 + CA264_00355 0.55 +0.6 81,083 + CA264_00355 0.55 +0.9 81,083 + CA264_00355 0.55 -0.6 81,083 + CA264_00355 0.55 +0.4 81,083 + CA264_00355 0.55 +1.0 81,084 - CA264_00355 0.55 +0.3 81,192 + CA264_00355 0.71 +0.7 81,193 - CA264_00355 0.71 +0.3 81,205 + CA264_00355 0.73 +0.6 81,213 - CA264_00355 0.74 -0.3 81,250 + CA264_00355 0.79 +0.9 81,301 + CA264_00355 0.86 +0.5 81,376 - +0.5 81,399 + +0.8 81,488 - -0.5 81,543 + +0.2 81,544 - +0.4 81,596 - +0.1 81,607 - +0.3
Or see this region's nucleotide sequence