Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00095

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00090 and CA264_00095 are separated by 15 nucleotidesCA264_00095 and CA264_00100 are separated by 23 nucleotides CA264_00090: CA264_00090 - histidine kinase, at 22,654 to 25,377 _00090 CA264_00095: CA264_00095 - response regulator, at 25,393 to 25,776 _00095 CA264_00100: CA264_00100 - acetate--CoA ligase, at 25,800 to 29,657 _00100 Position (kb) 25 26Strain fitness (log2 ratio) -2 -1 0 1 2at 24.496 kb on - strand, within CA264_00090at 24.496 kb on - strand, within CA264_00090at 24.496 kb on - strand, within CA264_00090at 24.527 kb on + strand, within CA264_00090at 24.527 kb on + strand, within CA264_00090at 24.528 kb on - strand, within CA264_00090at 24.528 kb on - strand, within CA264_00090at 24.531 kb on + strand, within CA264_00090at 24.532 kb on - strand, within CA264_00090at 24.532 kb on - strand, within CA264_00090at 24.532 kb on - strand, within CA264_00090at 24.532 kb on - strand, within CA264_00090at 24.534 kb on - strand, within CA264_00090at 24.577 kb on - strand, within CA264_00090at 24.577 kb on - strand, within CA264_00090at 24.724 kb on - strand, within CA264_00090at 24.750 kb on - strand, within CA264_00090at 24.750 kb on - strand, within CA264_00090at 24.755 kb on - strand, within CA264_00090at 24.755 kb on - strand, within CA264_00090at 24.755 kb on - strand, within CA264_00090at 24.840 kb on + strand, within CA264_00090at 24.918 kb on - strand, within CA264_00090at 25.005 kb on + strand, within CA264_00090at 25.005 kb on + strand, within CA264_00090at 25.005 kb on + strand, within CA264_00090at 25.006 kb on - strand, within CA264_00090at 25.006 kb on - strand, within CA264_00090at 25.031 kb on + strand, within CA264_00090at 25.031 kb on + strand, within CA264_00090at 25.051 kb on - strand, within CA264_00090at 25.098 kb on - strand, within CA264_00090at 25.111 kb on + strandat 25.272 kb on - strandat 25.272 kb on - strandat 25.346 kb on + strandat 25.374 kb on - strandat 25.382 kb on - strandat 25.382 kb on - strandat 25.393 kb on - strandat 25.393 kb on - strandat 25.399 kb on - strandat 25.399 kb on - strandat 25.443 kb on + strand, within CA264_00095at 25.444 kb on - strand, within CA264_00095at 25.446 kb on + strand, within CA264_00095at 25.447 kb on - strand, within CA264_00095at 25.569 kb on + strand, within CA264_00095at 25.569 kb on + strand, within CA264_00095at 25.598 kb on + strand, within CA264_00095at 25.599 kb on - strand, within CA264_00095at 25.712 kb on - strand, within CA264_00095at 25.800 kb on - strandat 25.831 kb on - strandat 25.853 kb on + strandat 25.853 kb on + strandat 25.853 kb on + strandat 25.854 kb on - strandat 25.950 kb on + strandat 25.951 kb on - strandat 25.959 kb on + strandat 26.077 kb on - strandat 26.082 kb on + strandat 26.167 kb on - strandat 26.178 kb on - strandat 26.228 kb on - strand, within CA264_00100at 26.460 kb on + strand, within CA264_00100at 26.464 kb on + strand, within CA264_00100at 26.465 kb on - strand, within CA264_00100at 26.465 kb on - strand, within CA264_00100at 26.465 kb on - strand, within CA264_00100at 26.527 kb on - strand, within CA264_00100at 26.527 kb on - strand, within CA264_00100at 26.530 kb on + strand, within CA264_00100at 26.530 kb on + strand, within CA264_00100at 26.531 kb on - strand, within CA264_00100at 26.531 kb on - strand, within CA264_00100at 26.531 kb on - strand, within CA264_00100at 26.531 kb on - strand, within CA264_00100at 26.535 kb on + strand, within CA264_00100at 26.536 kb on - strand, within CA264_00100at 26.608 kb on - strand, within CA264_00100at 26.608 kb on - strand, within CA264_00100at 26.608 kb on - strand, within CA264_00100at 26.632 kb on + strand, within CA264_00100at 26.692 kb on - strand, within CA264_00100at 26.692 kb on - strand, within CA264_00100

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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24,496 - CA264_00090 0.68 -1.7
24,496 - CA264_00090 0.68 -0.4
24,496 - CA264_00090 0.68 +0.3
24,527 + CA264_00090 0.69 +0.6
24,527 + CA264_00090 0.69 +0.1
24,528 - CA264_00090 0.69 -0.7
24,528 - CA264_00090 0.69 -1.4
24,531 + CA264_00090 0.69 +0.1
24,532 - CA264_00090 0.69 -0.5
24,532 - CA264_00090 0.69 -0.3
24,532 - CA264_00090 0.69 +0.2
24,532 - CA264_00090 0.69 -0.6
24,534 - CA264_00090 0.69 -0.8
24,577 - CA264_00090 0.71 -0.2
24,577 - CA264_00090 0.71 +0.8
24,724 - CA264_00090 0.76 -0.5
24,750 - CA264_00090 0.77 +0.2
24,750 - CA264_00090 0.77 -0.6
24,755 - CA264_00090 0.77 +0.1
24,755 - CA264_00090 0.77 -0.6
24,755 - CA264_00090 0.77 +0.4
24,840 + CA264_00090 0.80 +0.2
24,918 - CA264_00090 0.83 +1.0
25,005 + CA264_00090 0.86 -0.0
25,005 + CA264_00090 0.86 +0.3
25,005 + CA264_00090 0.86 +0.4
25,006 - CA264_00090 0.86 +1.2
25,006 - CA264_00090 0.86 -1.2
25,031 + CA264_00090 0.87 +0.1
25,031 + CA264_00090 0.87 +0.3
25,051 - CA264_00090 0.88 -0.3
25,098 - CA264_00090 0.90 +0.5
25,111 + +0.4
25,272 - -0.7
25,272 - -0.1
25,346 + +0.2
25,374 - -0.7
25,382 - -1.1
25,382 - -1.7
25,393 - +0.3
25,393 - -0.1
25,399 - -0.3
25,399 - +0.3
25,443 + CA264_00095 0.13 +0.2
25,444 - CA264_00095 0.13 -0.7
25,446 + CA264_00095 0.14 -0.5
25,447 - CA264_00095 0.14 +0.0
25,569 + CA264_00095 0.46 +0.3
25,569 + CA264_00095 0.46 +0.2
25,598 + CA264_00095 0.53 +0.6
25,599 - CA264_00095 0.54 +0.5
25,712 - CA264_00095 0.83 -0.2
25,800 - -1.3
25,831 - +0.3
25,853 + +0.2
25,853 + -0.4
25,853 + -1.0
25,854 - -2.1
25,950 + +0.2
25,951 - -0.5
25,959 + +0.0
26,077 - -0.3
26,082 + +0.5
26,167 - -0.3
26,178 - -0.2
26,228 - CA264_00100 0.11 -0.6
26,460 + CA264_00100 0.17 -0.2
26,464 + CA264_00100 0.17 +0.6
26,465 - CA264_00100 0.17 -0.1
26,465 - CA264_00100 0.17 -0.3
26,465 - CA264_00100 0.17 +0.1
26,527 - CA264_00100 0.19 +0.0
26,527 - CA264_00100 0.19 +0.3
26,530 + CA264_00100 0.19 +2.2
26,530 + CA264_00100 0.19 +0.3
26,531 - CA264_00100 0.19 +0.0
26,531 - CA264_00100 0.19 -0.7
26,531 - CA264_00100 0.19 +0.8
26,531 - CA264_00100 0.19 -0.7
26,535 + CA264_00100 0.19 +0.5
26,536 - CA264_00100 0.19 -0.4
26,608 - CA264_00100 0.21 -0.2
26,608 - CA264_00100 0.21 -0.0
26,608 - CA264_00100 0.21 +0.2
26,632 + CA264_00100 0.22 +0.2
26,692 - CA264_00100 0.23 +0.7
26,692 - CA264_00100 0.23 +0.4

Or see this region's nucleotide sequence