Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00065 and CA264_00070 are separated by 903 nucleotides CA264_00070 and CA264_00075 are separated by 38 nucleotides CA264_00075 and CA264_00080 are separated by 27 nucleotides
CA264_00065: CA264_00065 - transposase, at 17,626 to 18,045
_00065
CA264_00070: CA264_00070 - hypothetical protein, at 18,949 to 20,298
_00070
CA264_00075: CA264_00075 - hypothetical protein, at 20,337 to 20,600
_00075
CA264_00080: CA264_00080 - cation acetate symporter, at 20,628 to 22,319
_00080
Position (kb) 18
19
20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 18.010 kb on + strand at 18.011 kb on - strand at 18.011 kb on - strand at 18.011 kb on - strand at 18.022 kb on - strand at 18.148 kb on + strand at 18.149 kb on - strand at 18.166 kb on + strand at 18.187 kb on - strand at 18.199 kb on - strand at 18.252 kb on + strand at 18.303 kb on - strand at 18.457 kb on - strand at 18.471 kb on + strand at 18.504 kb on + strand at 18.505 kb on - strand at 18.552 kb on + strand at 18.554 kb on + strand at 18.554 kb on + strand at 18.554 kb on + strand at 18.555 kb on - strand at 18.570 kb on - strand at 18.698 kb on + strand at 18.699 kb on - strand at 18.699 kb on - strand at 18.701 kb on + strand at 18.701 kb on + strand at 18.701 kb on + strand at 18.702 kb on - strand at 18.706 kb on + strand at 18.706 kb on + strand at 18.706 kb on + strand at 18.707 kb on - strand at 18.709 kb on - strand at 18.772 kb on + strand at 18.798 kb on - strand at 18.845 kb on + strand at 18.846 kb on - strand at 18.850 kb on + strand at 18.888 kb on + strand at 18.888 kb on + strand at 18.965 kb on + strand at 18.966 kb on - strand at 18.966 kb on - strand at 18.966 kb on - strand at 19.011 kb on + strand at 19.032 kb on - strand at 19.032 kb on - strand at 19.033 kb on + strand at 19.208 kb on - strand, within CA264_00070 at 19.316 kb on - strand, within CA264_00070 at 19.339 kb on + strand, within CA264_00070 at 19.339 kb on + strand, within CA264_00070 at 19.354 kb on - strand, within CA264_00070 at 19.358 kb on - strand, within CA264_00070 at 19.469 kb on + strand, within CA264_00070 at 19.603 kb on + strand, within CA264_00070 at 19.644 kb on + strand, within CA264_00070 at 19.644 kb on + strand, within CA264_00070 at 19.645 kb on - strand, within CA264_00070 at 19.700 kb on - strand, within CA264_00070 at 19.710 kb on + strand, within CA264_00070 at 19.711 kb on - strand, within CA264_00070 at 19.823 kb on + strand, within CA264_00070 at 19.823 kb on + strand, within CA264_00070 at 19.824 kb on - strand, within CA264_00070 at 19.824 kb on - strand, within CA264_00070 at 19.895 kb on - strand, within CA264_00070 at 19.895 kb on - strand, within CA264_00070 at 19.906 kb on + strand, within CA264_00070 at 19.907 kb on - strand, within CA264_00070 at 19.907 kb on - strand, within CA264_00070 at 19.907 kb on - strand, within CA264_00070 at 19.912 kb on + strand, within CA264_00070 at 19.913 kb on - strand, within CA264_00070 at 20.038 kb on + strand, within CA264_00070 at 20.098 kb on - strand, within CA264_00070 at 20.141 kb on + strand, within CA264_00070 at 20.141 kb on + strand, within CA264_00070 at 20.142 kb on - strand, within CA264_00070 at 20.142 kb on - strand, within CA264_00070 at 20.235 kb on + strand at 20.257 kb on + strand at 20.258 kb on - strand at 20.272 kb on - strand at 20.311 kb on - strand at 20.323 kb on + strand at 20.324 kb on - strand at 20.324 kb on - strand at 20.331 kb on + strand at 20.331 kb on + strand at 20.428 kb on - strand, within CA264_00075 at 20.638 kb on + strand at 20.639 kb on - strand at 20.639 kb on - strand at 20.650 kb on - strand at 20.667 kb on - strand at 20.727 kb on + strand at 20.728 kb on - strand at 20.728 kb on - strand at 20.804 kb on + strand, within CA264_00080 at 20.822 kb on + strand, within CA264_00080 at 20.823 kb on - strand, within CA264_00080 at 20.823 kb on - strand, within CA264_00080 at 20.853 kb on + strand, within CA264_00080 at 20.853 kb on + strand, within CA264_00080 at 20.925 kb on - strand, within CA264_00080 at 20.930 kb on + strand, within CA264_00080 at 20.959 kb on - strand, within CA264_00080 at 20.962 kb on - strand, within CA264_00080 at 21.005 kb on + strand, within CA264_00080 at 21.015 kb on - strand, within CA264_00080 at 21.019 kb on - strand, within CA264_00080 at 21.149 kb on + strand, within CA264_00080 at 21.150 kb on - strand, within CA264_00080 at 21.192 kb on + strand, within CA264_00080 at 21.193 kb on - strand, within CA264_00080 at 21.207 kb on - strand, within CA264_00080 at 21.212 kb on + strand, within CA264_00080 at 21.213 kb on - strand, within CA264_00080
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 18,010 + +0.2 18,011 - +0.3 18,011 - -0.2 18,011 - -0.1 18,022 - +0.1 18,148 + -2.4 18,149 - -0.8 18,166 + +0.6 18,187 - -0.3 18,199 - -0.4 18,252 + -0.7 18,303 - +0.5 18,457 - +0.2 18,471 + -1.0 18,504 + -0.8 18,505 - +0.1 18,552 + -2.4 18,554 + -1.8 18,554 + -1.6 18,554 + -0.7 18,555 - -1.3 18,570 - -0.9 18,698 + -1.5 18,699 - -1.4 18,699 - -1.7 18,701 + -0.6 18,701 + -1.5 18,701 + -0.5 18,702 - -1.9 18,706 + -1.7 18,706 + -1.3 18,706 + -0.6 18,707 - -2.0 18,709 - -2.4 18,772 + -0.3 18,798 - -0.8 18,845 + +1.5 18,846 - -0.4 18,850 + -1.0 18,888 + +0.6 18,888 + -1.2 18,965 + -0.2 18,966 - -1.3 18,966 - -0.4 18,966 - -0.8 19,011 + -1.7 19,032 - -1.8 19,032 - -0.8 19,033 + -0.7 19,208 - CA264_00070 0.19 -1.8 19,316 - CA264_00070 0.27 -0.4 19,339 + CA264_00070 0.29 -0.4 19,339 + CA264_00070 0.29 -1.0 19,354 - CA264_00070 0.30 -1.3 19,358 - CA264_00070 0.30 +0.0 19,469 + CA264_00070 0.39 -1.3 19,603 + CA264_00070 0.48 -1.6 19,644 + CA264_00070 0.51 -1.4 19,644 + CA264_00070 0.51 +0.1 19,645 - CA264_00070 0.52 +0.5 19,700 - CA264_00070 0.56 -0.0 19,710 + CA264_00070 0.56 +1.0 19,711 - CA264_00070 0.56 -1.1 19,823 + CA264_00070 0.65 -2.8 19,823 + CA264_00070 0.65 -0.6 19,824 - CA264_00070 0.65 -0.9 19,824 - CA264_00070 0.65 -1.8 19,895 - CA264_00070 0.70 -1.4 19,895 - CA264_00070 0.70 -1.6 19,906 + CA264_00070 0.71 -1.6 19,907 - CA264_00070 0.71 -2.0 19,907 - CA264_00070 0.71 -0.6 19,907 - CA264_00070 0.71 -1.2 19,912 + CA264_00070 0.71 -0.9 19,913 - CA264_00070 0.71 -1.2 20,038 + CA264_00070 0.81 -1.4 20,098 - CA264_00070 0.85 -0.2 20,141 + CA264_00070 0.88 +0.6 20,141 + CA264_00070 0.88 -1.8 20,142 - CA264_00070 0.88 -2.2 20,142 - CA264_00070 0.88 -0.7 20,235 + -1.5 20,257 + -1.3 20,258 - +0.3 20,272 - -0.6 20,311 - -2.3 20,323 + -0.3 20,324 - -0.9 20,324 - -0.2 20,331 + +0.2 20,331 + +1.0 20,428 - CA264_00075 0.34 -1.3 20,638 + +0.1 20,639 - -1.4 20,639 - -0.6 20,650 - -0.0 20,667 - +0.0 20,727 + -0.1 20,728 - -0.6 20,728 - +0.0 20,804 + CA264_00080 0.10 +0.2 20,822 + CA264_00080 0.11 -0.6 20,823 - CA264_00080 0.12 -0.2 20,823 - CA264_00080 0.12 -0.2 20,853 + CA264_00080 0.13 +0.2 20,853 + CA264_00080 0.13 -0.6 20,925 - CA264_00080 0.18 +0.5 20,930 + CA264_00080 0.18 -1.5 20,959 - CA264_00080 0.20 -0.4 20,962 - CA264_00080 0.20 +0.2 21,005 + CA264_00080 0.22 -0.9 21,015 - CA264_00080 0.23 +0.4 21,019 - CA264_00080 0.23 -0.1 21,149 + CA264_00080 0.31 -0.4 21,150 - CA264_00080 0.31 -1.5 21,192 + CA264_00080 0.33 -0.7 21,193 - CA264_00080 0.33 -0.0 21,207 - CA264_00080 0.34 -0.5 21,212 + CA264_00080 0.35 -0.3 21,213 - CA264_00080 0.35 -0.1
Or see this region's nucleotide sequence