Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26510 and PS417_26515 are separated by 77 nucleotides PS417_26515 and PS417_26520 are separated by 73 nucleotides
PS417_26510: PS417_26510 - 5,10-methylenetetrahydrofolate reductase, at 5,733,540 to 5,734,385
_26510
PS417_26515: PS417_26515 - hypothetical protein, at 5,734,463 to 5,735,545
_26515
PS417_26520: PS417_26520 - amino acid ABC transporter substrate-binding protein, at 5,735,619 to 5,736,410
_26520
Position (kb) 5734
5735
5736 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5733.504 kb on + strand at 5733.505 kb on - strand at 5733.505 kb on - strand at 5733.636 kb on + strand, within PS417_26510 at 5733.636 kb on + strand, within PS417_26510 at 5733.636 kb on + strand, within PS417_26510 at 5733.637 kb on - strand, within PS417_26510 at 5733.885 kb on + strand, within PS417_26510 at 5734.050 kb on + strand, within PS417_26510 at 5734.051 kb on - strand, within PS417_26510 at 5734.071 kb on + strand, within PS417_26510 at 5734.071 kb on + strand, within PS417_26510 at 5734.072 kb on - strand, within PS417_26510 at 5734.072 kb on - strand, within PS417_26510 at 5734.149 kb on + strand, within PS417_26510 at 5734.150 kb on - strand, within PS417_26510 at 5734.209 kb on - strand, within PS417_26510 at 5734.277 kb on + strand, within PS417_26510 at 5734.277 kb on + strand, within PS417_26510 at 5734.277 kb on + strand, within PS417_26510 at 5734.278 kb on - strand, within PS417_26510 at 5734.278 kb on - strand, within PS417_26510 at 5734.323 kb on + strand at 5734.323 kb on + strand at 5734.324 kb on - strand at 5734.324 kb on - strand at 5734.438 kb on + strand at 5734.454 kb on + strand at 5734.455 kb on - strand at 5734.468 kb on + strand at 5734.468 kb on + strand at 5734.468 kb on + strand at 5734.469 kb on - strand at 5734.503 kb on - strand at 5734.527 kb on - strand at 5734.653 kb on + strand, within PS417_26515 at 5734.853 kb on + strand, within PS417_26515 at 5734.854 kb on - strand, within PS417_26515 at 5734.889 kb on + strand, within PS417_26515 at 5734.890 kb on - strand, within PS417_26515 at 5735.049 kb on - strand, within PS417_26515 at 5735.337 kb on - strand, within PS417_26515 at 5735.658 kb on - strand at 5735.658 kb on - strand at 5735.658 kb on - strand at 5735.680 kb on - strand at 5735.722 kb on - strand, within PS417_26520 at 5735.722 kb on - strand, within PS417_26520 at 5735.722 kb on - strand, within PS417_26520 at 5735.722 kb on - strand, within PS417_26520 at 5735.722 kb on - strand, within PS417_26520 at 5735.722 kb on - strand, within PS417_26520 at 5735.728 kb on - strand, within PS417_26520 at 5736.031 kb on - strand, within PS417_26520 at 5736.342 kb on + strand at 5736.421 kb on - strand at 5736.421 kb on - strand at 5736.422 kb on + strand at 5736.423 kb on - strand at 5736.423 kb on - strand at 5736.423 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 5,733,504 + +0.2 5,733,505 - +0.1 5,733,505 - +0.7 5,733,636 + PS417_26510 0.11 +0.2 5,733,636 + PS417_26510 0.11 +0.1 5,733,636 + PS417_26510 0.11 +0.2 5,733,637 - PS417_26510 0.11 -2.4 5,733,885 + PS417_26510 0.41 -0.1 5,734,050 + PS417_26510 0.60 -0.0 5,734,051 - PS417_26510 0.60 -0.2 5,734,071 + PS417_26510 0.63 +1.2 5,734,071 + PS417_26510 0.63 -0.6 5,734,072 - PS417_26510 0.63 -0.3 5,734,072 - PS417_26510 0.63 +0.4 5,734,149 + PS417_26510 0.72 -0.1 5,734,150 - PS417_26510 0.72 -0.5 5,734,209 - PS417_26510 0.79 -0.4 5,734,277 + PS417_26510 0.87 -0.6 5,734,277 + PS417_26510 0.87 -0.6 5,734,277 + PS417_26510 0.87 -0.1 5,734,278 - PS417_26510 0.87 -0.7 5,734,278 - PS417_26510 0.87 -1.4 5,734,323 + -0.3 5,734,323 + +0.7 5,734,324 - +0.1 5,734,324 - -2.9 5,734,438 + -0.2 5,734,454 + -0.2 5,734,455 - +0.2 5,734,468 + +0.0 5,734,468 + +0.6 5,734,468 + -0.4 5,734,469 - -0.1 5,734,503 - -0.3 5,734,527 - -0.1 5,734,653 + PS417_26515 0.18 -0.5 5,734,853 + PS417_26515 0.36 +0.2 5,734,854 - PS417_26515 0.36 -1.1 5,734,889 + PS417_26515 0.39 -0.4 5,734,890 - PS417_26515 0.39 -1.0 5,735,049 - PS417_26515 0.54 -1.8 5,735,337 - PS417_26515 0.81 -0.1 5,735,658 - +0.6 5,735,658 - +0.4 5,735,658 - +0.3 5,735,680 - +0.3 5,735,722 - PS417_26520 0.13 -0.3 5,735,722 - PS417_26520 0.13 -0.8 5,735,722 - PS417_26520 0.13 +0.1 5,735,722 - PS417_26520 0.13 -0.3 5,735,722 - PS417_26520 0.13 -0.1 5,735,722 - PS417_26520 0.13 +0.3 5,735,728 - PS417_26520 0.14 -0.2 5,736,031 - PS417_26520 0.52 -1.3 5,736,342 + +0.5 5,736,421 - -0.4 5,736,421 - -0.4 5,736,422 + +0.0 5,736,423 - +0.1 5,736,423 - +0.0 5,736,423 - +0.4
Or see this region's nucleotide sequence