Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22505 and PS417_22510 are separated by 135 nucleotides PS417_22510 and PS417_22515 are separated by 123 nucleotides PS417_22515 and PS417_22520 are separated by 46 nucleotides
PS417_22505: PS417_22505 - mechanosensitive ion channel protein MscS, at 4,871,376 to 4,872,218
_22505
PS417_22510: PS417_22510 - nucleotide-binding protein, at 4,872,354 to 4,872,839
_22510
PS417_22515: PS417_22515 - 2-dehydropantoate 2-reductase, at 4,872,963 to 4,873,880
_22515
PS417_22520: PS417_22520 - histidine kinase, at 4,873,927 to 4,875,963
_22520
Position (kb) 4872
4873
4874 Strain fitness (log2 ratio) -1
0
1 at 4872.020 kb on + strand, within PS417_22505 at 4872.050 kb on + strand, within PS417_22505 at 4872.087 kb on + strand, within PS417_22505 at 4872.087 kb on + strand at 4872.088 kb on - strand, within PS417_22505 at 4872.088 kb on - strand, within PS417_22505 at 4872.220 kb on + strand at 4872.220 kb on + strand at 4872.220 kb on + strand at 4872.221 kb on - strand at 4872.221 kb on - strand at 4872.221 kb on - strand at 4872.221 kb on - strand at 4872.221 kb on - strand at 4872.251 kb on - strand at 4872.263 kb on + strand at 4872.263 kb on + strand at 4872.264 kb on - strand at 4872.264 kb on - strand at 4872.264 kb on - strand at 4872.293 kb on - strand at 4872.854 kb on - strand at 4872.854 kb on - strand at 4872.854 kb on - strand at 4872.855 kb on + strand at 4872.855 kb on + strand at 4872.856 kb on - strand at 4872.856 kb on - strand at 4872.856 kb on - strand at 4872.909 kb on + strand at 4872.911 kb on + strand at 4872.911 kb on + strand at 4872.912 kb on - strand at 4872.912 kb on - strand at 4872.980 kb on + strand at 4872.981 kb on - strand at 4872.981 kb on - strand at 4873.124 kb on - strand, within PS417_22515 at 4873.203 kb on + strand at 4873.204 kb on - strand, within PS417_22515 at 4873.399 kb on - strand, within PS417_22515 at 4873.555 kb on - strand, within PS417_22515 at 4873.555 kb on - strand, within PS417_22515 at 4873.711 kb on - strand, within PS417_22515 at 4873.723 kb on - strand, within PS417_22515 at 4873.723 kb on - strand, within PS417_22515 at 4873.762 kb on - strand, within PS417_22515 at 4873.762 kb on - strand, within PS417_22515 at 4873.765 kb on + strand, within PS417_22515 at 4873.765 kb on + strand, within PS417_22515 at 4873.765 kb on + strand, within PS417_22515 at 4873.766 kb on - strand, within PS417_22515 at 4873.766 kb on - strand at 4873.766 kb on - strand, within PS417_22515 at 4874.360 kb on + strand, within PS417_22520 at 4874.545 kb on + strand, within PS417_22520
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 4,872,020 + PS417_22505 0.76 +0.3 4,872,050 + PS417_22505 0.80 -0.8 4,872,087 + PS417_22505 0.84 -0.7 4,872,087 + -0.2 4,872,088 - PS417_22505 0.84 +0.5 4,872,088 - PS417_22505 0.84 +0.2 4,872,220 + +0.8 4,872,220 + -0.8 4,872,220 + -0.3 4,872,221 - +0.4 4,872,221 - +0.1 4,872,221 - +0.4 4,872,221 - -0.2 4,872,221 - -1.2 4,872,251 - -1.5 4,872,263 + +1.4 4,872,263 + +0.2 4,872,264 - +0.5 4,872,264 - +0.4 4,872,264 - +0.4 4,872,293 - +1.1 4,872,854 - +1.4 4,872,854 - +0.0 4,872,854 - -0.2 4,872,855 + +0.4 4,872,855 + -0.1 4,872,856 - +0.2 4,872,856 - -0.0 4,872,856 - -0.1 4,872,909 + -0.5 4,872,911 + +0.4 4,872,911 + +0.5 4,872,912 - -0.8 4,872,912 - -0.3 4,872,980 + +0.4 4,872,981 - +0.9 4,872,981 - -0.3 4,873,124 - PS417_22515 0.18 +0.2 4,873,203 + +0.4 4,873,204 - PS417_22515 0.26 -0.2 4,873,399 - PS417_22515 0.47 +0.1 4,873,555 - PS417_22515 0.64 -1.1 4,873,555 - PS417_22515 0.64 -0.2 4,873,711 - PS417_22515 0.81 -0.6 4,873,723 - PS417_22515 0.83 -0.3 4,873,723 - PS417_22515 0.83 +0.4 4,873,762 - PS417_22515 0.87 +0.7 4,873,762 - PS417_22515 0.87 +0.4 4,873,765 + PS417_22515 0.87 -0.3 4,873,765 + PS417_22515 0.87 +0.1 4,873,765 + PS417_22515 0.87 +0.4 4,873,766 - PS417_22515 0.87 +0.6 4,873,766 - +1.4 4,873,766 - PS417_22515 0.87 +0.1 4,874,360 + PS417_22520 0.21 +0.1 4,874,545 + PS417_22520 0.30 -0.4
Or see this region's nucleotide sequence