Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19055 and PS417_19060 are separated by 61 nucleotides PS417_19060 and PS417_19065 overlap by 4 nucleotides PS417_19065 and PS417_19070 overlap by 12 nucleotides
PS417_19055: PS417_19055 - ArsR family transcriptional regulator, at 4,123,914 to 4,124,216
_19055
PS417_19060: PS417_19060 - NADPH:quinone oxidoreductase, at 4,124,278 to 4,125,258
_19060
PS417_19065: PS417_19065 - monooxygenase, at 4,125,255 to 4,125,593
_19065
PS417_19070: PS417_19070 - hypothetical protein, at 4,125,582 to 4,126,310
_19070
Position (kb) 4124
4125
4126 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4123.317 kb on + strand at 4123.317 kb on + strand at 4123.532 kb on - strand at 4123.746 kb on + strand at 4123.768 kb on + strand at 4123.870 kb on - strand at 4123.922 kb on - strand at 4123.930 kb on + strand at 4124.027 kb on + strand, within PS417_19055 at 4124.094 kb on + strand, within PS417_19055 at 4124.157 kb on + strand, within PS417_19055 at 4124.157 kb on + strand, within PS417_19055 at 4124.157 kb on + strand, within PS417_19055 at 4124.157 kb on + strand, within PS417_19055 at 4124.158 kb on - strand, within PS417_19055 at 4124.158 kb on - strand, within PS417_19055 at 4124.291 kb on + strand at 4124.292 kb on - strand at 4124.292 kb on - strand at 4124.295 kb on + strand at 4124.295 kb on + strand at 4124.295 kb on + strand at 4124.296 kb on - strand at 4124.296 kb on - strand at 4124.407 kb on + strand, within PS417_19060 at 4124.537 kb on - strand, within PS417_19060 at 4124.578 kb on + strand, within PS417_19060 at 4124.579 kb on - strand, within PS417_19060 at 4124.723 kb on + strand, within PS417_19060 at 4124.724 kb on - strand, within PS417_19060 at 4124.724 kb on - strand, within PS417_19060 at 4124.724 kb on - strand, within PS417_19060 at 4124.872 kb on + strand, within PS417_19060 at 4124.872 kb on + strand, within PS417_19060 at 4124.872 kb on + strand, within PS417_19060 at 4124.873 kb on - strand, within PS417_19060 at 4124.873 kb on - strand, within PS417_19060 at 4125.098 kb on + strand, within PS417_19060 at 4125.099 kb on - strand, within PS417_19060 at 4125.148 kb on + strand, within PS417_19060 at 4125.522 kb on + strand, within PS417_19065 at 4125.660 kb on + strand, within PS417_19070 at 4125.674 kb on - strand, within PS417_19070 at 4125.688 kb on - strand, within PS417_19070 at 4125.945 kb on + strand, within PS417_19070 at 4125.945 kb on + strand, within PS417_19070 at 4125.946 kb on - strand, within PS417_19070 at 4125.947 kb on + strand at 4125.947 kb on + strand, within PS417_19070 at 4125.948 kb on - strand, within PS417_19070 at 4125.948 kb on - strand, within PS417_19070 at 4126.056 kb on + strand, within PS417_19070 at 4126.057 kb on - strand, within PS417_19070 at 4126.076 kb on - strand, within PS417_19070 at 4126.085 kb on + strand, within PS417_19070 at 4126.086 kb on - strand, within PS417_19070 at 4126.258 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 4,123,317 + -0.7 4,123,317 + +0.1 4,123,532 - -0.3 4,123,746 + +0.1 4,123,768 + +0.1 4,123,870 - +0.1 4,123,922 - -0.2 4,123,930 + -0.4 4,124,027 + PS417_19055 0.37 -0.4 4,124,094 + PS417_19055 0.59 +0.4 4,124,157 + PS417_19055 0.80 -1.6 4,124,157 + PS417_19055 0.80 +0.2 4,124,157 + PS417_19055 0.80 -1.1 4,124,157 + PS417_19055 0.80 +0.1 4,124,158 - PS417_19055 0.81 +0.2 4,124,158 - PS417_19055 0.81 -0.9 4,124,291 + -0.2 4,124,292 - +0.6 4,124,292 - -0.2 4,124,295 + -0.0 4,124,295 + +0.1 4,124,295 + +0.1 4,124,296 - +0.6 4,124,296 - +0.0 4,124,407 + PS417_19060 0.13 -2.0 4,124,537 - PS417_19060 0.26 -1.7 4,124,578 + PS417_19060 0.31 -1.6 4,124,579 - PS417_19060 0.31 -0.1 4,124,723 + PS417_19060 0.45 +1.1 4,124,724 - PS417_19060 0.45 -0.1 4,124,724 - PS417_19060 0.45 -0.4 4,124,724 - PS417_19060 0.45 +0.2 4,124,872 + PS417_19060 0.61 -1.1 4,124,872 + PS417_19060 0.61 -2.5 4,124,872 + PS417_19060 0.61 -0.4 4,124,873 - PS417_19060 0.61 +0.5 4,124,873 - PS417_19060 0.61 -0.4 4,125,098 + PS417_19060 0.84 -0.1 4,125,099 - PS417_19060 0.84 -0.9 4,125,148 + PS417_19060 0.89 -0.6 4,125,522 + PS417_19065 0.79 -1.0 4,125,660 + PS417_19070 0.11 +0.6 4,125,674 - PS417_19070 0.13 -1.0 4,125,688 - PS417_19070 0.15 +0.4 4,125,945 + PS417_19070 0.50 -0.9 4,125,945 + PS417_19070 0.50 +0.8 4,125,946 - PS417_19070 0.50 +0.8 4,125,947 + -1.7 4,125,947 + PS417_19070 0.50 -0.3 4,125,948 - PS417_19070 0.50 -1.1 4,125,948 - PS417_19070 0.50 -0.6 4,126,056 + PS417_19070 0.65 +0.3 4,126,057 - PS417_19070 0.65 -1.4 4,126,076 - PS417_19070 0.68 +0.1 4,126,085 + PS417_19070 0.69 -0.5 4,126,086 - PS417_19070 0.69 +2.5 4,126,258 + +0.1
Or see this region's nucleotide sequence