Strain Fitness in Pseudomonas simiae WCS417 around PS417_06560

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06555 and PS417_06560 are separated by 106 nucleotidesPS417_06560 and PS417_06565 are separated by 96 nucleotidesPS417_06565 and PS417_06570 are separated by 105 nucleotides PS417_06555: PS417_06555 - hypothetical protein, at 1,453,031 to 1,454,644 _06555 PS417_06560: PS417_06560 - membrane protein, at 1,454,751 to 1,455,422 _06560 PS417_06565: PS417_06565 - short-chain dehydrogenase, at 1,455,519 to 1,456,118 _06565 PS417_06570: PS417_06570 - LysR family transcriptional regulator, at 1,456,224 to 1,457,132 _06570 Position (kb) 1454 1455 1456Strain fitness (log2 ratio) -2 -1 0 1 2at 1453.806 kb on + strand, within PS417_06555at 1453.806 kb on + strand, within PS417_06555at 1453.806 kb on + strand, within PS417_06555at 1453.806 kb on + strand, within PS417_06555at 1453.806 kb on + strand, within PS417_06555at 1453.807 kb on - strand, within PS417_06555at 1454.007 kb on - strand, within PS417_06555at 1454.007 kb on - strand, within PS417_06555at 1454.030 kb on - strand, within PS417_06555at 1454.030 kb on - strand, within PS417_06555at 1454.030 kb on - strand, within PS417_06555at 1454.052 kb on + strand, within PS417_06555at 1454.249 kb on + strand, within PS417_06555at 1454.250 kb on - strand, within PS417_06555at 1454.388 kb on + strand, within PS417_06555at 1454.389 kb on - strand, within PS417_06555at 1454.389 kb on - strand, within PS417_06555at 1454.458 kb on + strand, within PS417_06555at 1454.479 kb on - strand, within PS417_06555at 1454.518 kb on - strandat 1454.521 kb on + strandat 1454.521 kb on + strandat 1454.522 kb on - strandat 1454.522 kb on - strandat 1454.639 kb on + strandat 1454.700 kb on + strandat 1454.700 kb on + strandat 1454.700 kb on + strandat 1454.701 kb on - strandat 1454.702 kb on + strandat 1454.703 kb on - strandat 1454.703 kb on - strandat 1454.732 kb on - strandat 1454.947 kb on + strand, within PS417_06560at 1454.948 kb on - strand, within PS417_06560at 1455.101 kb on - strand, within PS417_06560at 1455.247 kb on + strand, within PS417_06560at 1455.247 kb on + strand, within PS417_06560at 1455.247 kb on + strand, within PS417_06560at 1455.248 kb on - strand, within PS417_06560at 1455.248 kb on - strand, within PS417_06560at 1455.396 kb on + strandat 1455.396 kb on + strandat 1455.530 kb on + strandat 1455.607 kb on + strand, within PS417_06565at 1455.619 kb on + strand, within PS417_06565at 1455.628 kb on + strand, within PS417_06565at 1455.628 kb on + strand, within PS417_06565at 1455.629 kb on - strand, within PS417_06565at 1456.002 kb on - strand, within PS417_06565at 1456.003 kb on + strand, within PS417_06565at 1456.140 kb on + strandat 1456.141 kb on - strandat 1456.157 kb on + strandat 1456.157 kb on + strandat 1456.157 kb on + strandat 1456.178 kb on + strandat 1456.190 kb on + strandat 1456.274 kb on + strandat 1456.280 kb on + strandat 1456.281 kb on - strandat 1456.391 kb on + strand, within PS417_06570at 1456.391 kb on + strand, within PS417_06570

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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1,453,806 + PS417_06555 0.48 -0.2
1,453,806 + PS417_06555 0.48 -0.9
1,453,806 + PS417_06555 0.48 +0.1
1,453,806 + PS417_06555 0.48 +0.2
1,453,806 + PS417_06555 0.48 +1.2
1,453,807 - PS417_06555 0.48 -0.4
1,454,007 - PS417_06555 0.60 +0.5
1,454,007 - PS417_06555 0.60 -0.6
1,454,030 - PS417_06555 0.62 +0.3
1,454,030 - PS417_06555 0.62 -0.2
1,454,030 - PS417_06555 0.62 +0.6
1,454,052 + PS417_06555 0.63 -0.5
1,454,249 + PS417_06555 0.75 -0.9
1,454,250 - PS417_06555 0.76 +0.5
1,454,388 + PS417_06555 0.84 -0.9
1,454,389 - PS417_06555 0.84 +0.9
1,454,389 - PS417_06555 0.84 +0.5
1,454,458 + PS417_06555 0.88 +0.1
1,454,479 - PS417_06555 0.90 -0.3
1,454,518 - -0.4
1,454,521 + +0.7
1,454,521 + -1.6
1,454,522 - -0.6
1,454,522 - +0.3
1,454,639 + -0.4
1,454,700 + +1.9
1,454,700 + -0.1
1,454,700 + -0.0
1,454,701 - -0.3
1,454,702 + +2.3
1,454,703 - -1.1
1,454,703 - -0.5
1,454,732 - -1.0
1,454,947 + PS417_06560 0.29 +0.4
1,454,948 - PS417_06560 0.29 +0.5
1,455,101 - PS417_06560 0.52 -0.1
1,455,247 + PS417_06560 0.74 +1.9
1,455,247 + PS417_06560 0.74 +0.3
1,455,247 + PS417_06560 0.74 +2.5
1,455,248 - PS417_06560 0.74 +0.1
1,455,248 - PS417_06560 0.74 -1.0
1,455,396 + -1.0
1,455,396 + +2.3
1,455,530 + -0.0
1,455,607 + PS417_06565 0.15 +0.4
1,455,619 + PS417_06565 0.17 +0.3
1,455,628 + PS417_06565 0.18 -0.3
1,455,628 + PS417_06565 0.18 +0.1
1,455,629 - PS417_06565 0.18 +0.9
1,456,002 - PS417_06565 0.81 +0.1
1,456,003 + PS417_06565 0.81 +0.2
1,456,140 + -0.3
1,456,141 - -0.5
1,456,157 + -1.9
1,456,157 + +0.2
1,456,157 + -0.5
1,456,178 + -0.6
1,456,190 + -1.5
1,456,274 + +0.3
1,456,280 + +0.1
1,456,281 - +0.1
1,456,391 + PS417_06570 0.18 -1.0
1,456,391 + PS417_06570 0.18 +0.3

Or see this region's nucleotide sequence