Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6011 and Atu6012 are separated by 697 nucleotides Atu6012 and Atu6013 are separated by 515 nucleotides
Atu6011: Atu6011 - tryptophan 2-monooxygenase, at 16,372 to 18,639
Atu6011
Atu6012: Atu6012 - isopentenyl transferase, at 19,337 to 20,059
Atu6012
Atu6013: Atu6013 - 6a protein, at 20,575 to 21,135
Atu6013
Position (kb) 19
20
21 Strain fitness (log2 ratio) -1
0
1
2
3 at 18.346 kb on + strand, within Atu6011 at 18.377 kb on - strand, within Atu6011 at 18.450 kb on - strand at 18.503 kb on - strand at 18.506 kb on + strand at 18.518 kb on + strand at 18.531 kb on - strand at 18.532 kb on + strand at 18.585 kb on + strand at 18.593 kb on - strand at 18.622 kb on - strand at 19.097 kb on + strand at 19.130 kb on + strand at 19.130 kb on + strand at 19.138 kb on - strand at 19.138 kb on - strand at 19.140 kb on + strand at 19.183 kb on - strand at 19.217 kb on - strand at 19.221 kb on + strand at 19.224 kb on - strand at 19.295 kb on - strand at 19.381 kb on - strand at 19.381 kb on - strand at 19.397 kb on - strand at 19.408 kb on + strand at 19.423 kb on + strand, within Atu6012 at 19.431 kb on - strand, within Atu6012 at 19.439 kb on + strand, within Atu6012 at 19.446 kb on - strand, within Atu6012 at 19.446 kb on - strand, within Atu6012 at 19.446 kb on - strand, within Atu6012 at 19.446 kb on - strand, within Atu6012 at 19.446 kb on - strand, within Atu6012 at 19.447 kb on - strand, within Atu6012 at 19.457 kb on - strand, within Atu6012 at 19.490 kb on - strand, within Atu6012 at 19.508 kb on + strand, within Atu6012 at 19.509 kb on + strand, within Atu6012 at 19.509 kb on + strand, within Atu6012 at 19.509 kb on + strand, within Atu6012 at 19.509 kb on + strand, within Atu6012 at 19.509 kb on + strand, within Atu6012 at 19.509 kb on + strand, within Atu6012 at 19.517 kb on - strand, within Atu6012 at 19.517 kb on - strand, within Atu6012 at 19.528 kb on - strand, within Atu6012 at 19.534 kb on + strand, within Atu6012 at 19.540 kb on + strand, within Atu6012 at 19.542 kb on - strand, within Atu6012 at 19.548 kb on - strand, within Atu6012 at 19.576 kb on + strand, within Atu6012 at 19.586 kb on + strand, within Atu6012 at 19.586 kb on + strand, within Atu6012 at 19.600 kb on + strand, within Atu6012 at 19.611 kb on + strand, within Atu6012 at 19.629 kb on + strand, within Atu6012 at 19.632 kb on + strand, within Atu6012 at 19.637 kb on - strand, within Atu6012 at 19.642 kb on + strand, within Atu6012 at 19.642 kb on + strand, within Atu6012 at 19.642 kb on + strand, within Atu6012 at 19.650 kb on - strand, within Atu6012 at 19.655 kb on + strand, within Atu6012 at 19.655 kb on + strand, within Atu6012 at 19.744 kb on + strand, within Atu6012 at 19.749 kb on + strand, within Atu6012 at 19.752 kb on - strand, within Atu6012 at 19.752 kb on - strand, within Atu6012 at 19.757 kb on - strand, within Atu6012 at 19.757 kb on - strand, within Atu6012 at 19.825 kb on + strand, within Atu6012 at 19.830 kb on + strand, within Atu6012 at 19.830 kb on + strand, within Atu6012 at 19.836 kb on + strand, within Atu6012 at 19.838 kb on - strand, within Atu6012 at 19.873 kb on - strand, within Atu6012 at 19.873 kb on - strand, within Atu6012 at 19.896 kb on + strand, within Atu6012 at 19.899 kb on - strand, within Atu6012 at 19.915 kb on + strand, within Atu6012 at 19.936 kb on - strand, within Atu6012 at 19.955 kb on + strand, within Atu6012 at 19.963 kb on - strand, within Atu6012 at 19.968 kb on - strand, within Atu6012 at 20.061 kb on - strand at 20.061 kb on - strand at 20.069 kb on + strand at 20.114 kb on - strand at 20.591 kb on + strand at 20.591 kb on + strand at 20.599 kb on - strand at 20.613 kb on + strand at 20.686 kb on - strand, within Atu6013 at 20.709 kb on - strand, within Atu6013 at 20.822 kb on + strand, within Atu6013 at 20.829 kb on + strand, within Atu6013 at 20.829 kb on + strand, within Atu6013 at 20.843 kb on + strand, within Atu6013 at 20.843 kb on + strand, within Atu6013 at 20.851 kb on - strand, within Atu6013 at 20.874 kb on - strand, within Atu6013 at 20.879 kb on + strand, within Atu6013 at 20.902 kb on - strand, within Atu6013 at 20.917 kb on + strand, within Atu6013 at 20.925 kb on - strand, within Atu6013 at 20.929 kb on + strand, within Atu6013 at 20.973 kb on + strand, within Atu6013 at 20.973 kb on + strand, within Atu6013 at 20.981 kb on - strand, within Atu6013 at 20.981 kb on - strand, within Atu6013 at 20.993 kb on + strand, within Atu6013 at 21.001 kb on - strand, within Atu6013 at 21.012 kb on - strand, within Atu6013 at 21.023 kb on + strand, within Atu6013
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 18,346 + Atu6011 0.87 +0.5 18,377 - Atu6011 0.88 -0.4 18,450 - +1.2 18,503 - +0.0 18,506 + +0.3 18,518 + -0.6 18,531 - +0.2 18,532 + +2.5 18,585 + +0.9 18,593 - -0.1 18,622 - -0.2 19,097 + +1.7 19,130 + +1.1 19,130 + +0.2 19,138 - +0.9 19,138 - +0.4 19,140 + +0.7 19,183 - +1.4 19,217 - +1.2 19,221 + +0.7 19,224 - +1.4 19,295 - -0.3 19,381 - -0.0 19,381 - +0.6 19,397 - +1.8 19,408 + +0.4 19,423 + Atu6012 0.12 +0.7 19,431 - Atu6012 0.13 +1.4 19,439 + Atu6012 0.14 +1.7 19,446 - Atu6012 0.15 +1.2 19,446 - Atu6012 0.15 +0.7 19,446 - Atu6012 0.15 +2.2 19,446 - Atu6012 0.15 +1.7 19,446 - Atu6012 0.15 -1.0 19,447 - Atu6012 0.15 -0.4 19,457 - Atu6012 0.17 +0.8 19,490 - Atu6012 0.21 +1.1 19,508 + Atu6012 0.24 -1.1 19,509 + Atu6012 0.24 -0.4 19,509 + Atu6012 0.24 -0.9 19,509 + Atu6012 0.24 +2.5 19,509 + Atu6012 0.24 +0.5 19,509 + Atu6012 0.24 +0.6 19,509 + Atu6012 0.24 +1.9 19,517 - Atu6012 0.25 +1.1 19,517 - Atu6012 0.25 +0.8 19,528 - Atu6012 0.26 +3.6 19,534 + Atu6012 0.27 -1.4 19,540 + Atu6012 0.28 +2.1 19,542 - Atu6012 0.28 -0.6 19,548 - Atu6012 0.29 +2.0 19,576 + Atu6012 0.33 +1.1 19,586 + Atu6012 0.34 +1.4 19,586 + Atu6012 0.34 +0.4 19,600 + Atu6012 0.36 +0.5 19,611 + Atu6012 0.38 +1.9 19,629 + Atu6012 0.40 +0.4 19,632 + Atu6012 0.41 +0.6 19,637 - Atu6012 0.41 +2.1 19,642 + Atu6012 0.42 +0.0 19,642 + Atu6012 0.42 +0.5 19,642 + Atu6012 0.42 +0.2 19,650 - Atu6012 0.43 +0.6 19,655 + Atu6012 0.44 -0.1 19,655 + Atu6012 0.44 +0.9 19,744 + Atu6012 0.56 +0.1 19,749 + Atu6012 0.57 +1.3 19,752 - Atu6012 0.57 +1.5 19,752 - Atu6012 0.57 +1.9 19,757 - Atu6012 0.58 +2.0 19,757 - Atu6012 0.58 +0.5 19,825 + Atu6012 0.67 -0.8 19,830 + Atu6012 0.68 +1.4 19,830 + Atu6012 0.68 +0.1 19,836 + Atu6012 0.69 +0.6 19,838 - Atu6012 0.69 +0.6 19,873 - Atu6012 0.74 +0.6 19,873 - Atu6012 0.74 +1.7 19,896 + Atu6012 0.77 -0.9 19,899 - Atu6012 0.78 +1.2 19,915 + Atu6012 0.80 +0.3 19,936 - Atu6012 0.83 +1.7 19,955 + Atu6012 0.85 +0.8 19,963 - Atu6012 0.87 +3.1 19,968 - Atu6012 0.87 +0.0 20,061 - +1.2 20,061 - -0.6 20,069 + +0.9 20,114 - +1.0 20,591 + -0.5 20,591 + +2.0 20,599 - +1.8 20,613 + +0.5 20,686 - Atu6013 0.20 +0.1 20,709 - Atu6013 0.24 -0.0 20,822 + Atu6013 0.44 +0.1 20,829 + Atu6013 0.45 +1.5 20,829 + Atu6013 0.45 +1.1 20,843 + Atu6013 0.48 +0.5 20,843 + Atu6013 0.48 +0.8 20,851 - Atu6013 0.49 +0.9 20,874 - Atu6013 0.53 -0.5 20,879 + Atu6013 0.54 +1.7 20,902 - Atu6013 0.58 -0.7 20,917 + Atu6013 0.61 +0.2 20,925 - Atu6013 0.62 +0.4 20,929 + Atu6013 0.63 +0.9 20,973 + Atu6013 0.71 -0.0 20,973 + Atu6013 0.71 +0.5 20,981 - Atu6013 0.72 +0.6 20,981 - Atu6013 0.72 -0.8 20,993 + Atu6013 0.75 +0.4 21,001 - Atu6013 0.76 +2.1 21,012 - Atu6013 0.78 +0.2 21,023 + Atu6013 0.80 +0.8
Or see this region's nucleotide sequence