Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3297 and Atu3298 are separated by 695 nucleotides Atu3298 and Atu3299 are separated by 177 nucleotides Atu3299 and Atu3300 are separated by 41 nucleotides
Atu3297: Atu3297 - two component sensor kinase for C4-dicarboxylate transport, at 323,054 to 324,436
Atu3297
Atu3298: Atu3298 - C4-dicarboxylate transporter DctA, at 325,132 to 326,478
Atu3298
Atu3299: Atu3299 - hypothetical protein, at 326,656 to 327,093
Atu3299
Atu3300: Atu3300 - aminotransferase, at 327,135 to 328,487
Atu3300
Position (kb) 325
326
327 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 324.140 kb on + strand, within Atu3297 at 324.163 kb on + strand, within Atu3297 at 324.224 kb on - strand, within Atu3297 at 324.240 kb on + strand, within Atu3297 at 324.278 kb on + strand, within Atu3297 at 324.281 kb on - strand, within Atu3297 at 324.333 kb on + strand at 324.487 kb on + strand at 324.549 kb on + strand at 324.566 kb on - strand at 324.702 kb on + strand at 324.710 kb on - strand at 324.727 kb on - strand at 324.802 kb on + strand at 324.810 kb on - strand at 324.829 kb on - strand at 324.876 kb on + strand at 325.049 kb on - strand at 325.049 kb on - strand at 325.092 kb on - strand at 325.312 kb on + strand, within Atu3298 at 325.410 kb on + strand, within Atu3298 at 325.439 kb on + strand, within Atu3298 at 325.484 kb on - strand, within Atu3298 at 325.513 kb on + strand, within Atu3298 at 325.521 kb on - strand, within Atu3298 at 325.535 kb on + strand, within Atu3298 at 325.540 kb on + strand, within Atu3298 at 325.615 kb on - strand, within Atu3298 at 325.621 kb on + strand, within Atu3298 at 325.626 kb on + strand, within Atu3298 at 325.748 kb on - strand, within Atu3298 at 325.905 kb on + strand, within Atu3298 at 325.978 kb on + strand, within Atu3298 at 325.987 kb on + strand, within Atu3298 at 326.035 kb on - strand, within Atu3298 at 326.068 kb on - strand, within Atu3298 at 326.090 kb on - strand, within Atu3298 at 326.114 kb on - strand, within Atu3298 at 326.163 kb on + strand, within Atu3298 at 326.202 kb on + strand, within Atu3298 at 326.381 kb on + strand at 326.451 kb on + strand at 326.492 kb on + strand at 326.492 kb on + strand at 326.500 kb on - strand at 326.526 kb on + strand at 326.537 kb on + strand at 326.654 kb on - strand at 326.983 kb on - strand, within Atu3299 at 327.022 kb on - strand, within Atu3299 at 327.131 kb on - strand at 327.133 kb on + strand at 327.141 kb on - strand at 327.141 kb on - strand at 327.263 kb on - strand at 327.311 kb on + strand, within Atu3300 at 327.329 kb on + strand, within Atu3300 at 327.421 kb on + strand, within Atu3300 at 327.447 kb on - strand, within Atu3300
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 324,140 + Atu3297 0.79 -2.7 324,163 + Atu3297 0.80 -1.7 324,224 - Atu3297 0.85 -2.0 324,240 + Atu3297 0.86 -0.5 324,278 + Atu3297 0.89 -2.0 324,281 - Atu3297 0.89 -0.2 324,333 + -1.0 324,487 + -2.2 324,549 + -1.0 324,566 - -1.6 324,702 + -1.6 324,710 - -2.6 324,727 - -1.9 324,802 + -1.5 324,810 - -3.8 324,829 - -1.8 324,876 + +0.2 325,049 - -0.7 325,049 - -0.9 325,092 - -2.4 325,312 + Atu3298 0.13 -1.3 325,410 + Atu3298 0.21 -2.3 325,439 + Atu3298 0.23 -1.4 325,484 - Atu3298 0.26 -2.0 325,513 + Atu3298 0.28 -2.5 325,521 - Atu3298 0.29 -2.0 325,535 + Atu3298 0.30 -1.0 325,540 + Atu3298 0.30 -2.0 325,615 - Atu3298 0.36 -1.8 325,621 + Atu3298 0.36 -1.8 325,626 + Atu3298 0.37 -1.8 325,748 - Atu3298 0.46 -1.4 325,905 + Atu3298 0.57 -0.8 325,978 + Atu3298 0.63 -2.6 325,987 + Atu3298 0.63 -2.2 326,035 - Atu3298 0.67 -1.5 326,068 - Atu3298 0.69 -2.2 326,090 - Atu3298 0.71 -1.6 326,114 - Atu3298 0.73 -1.6 326,163 + Atu3298 0.77 -4.0 326,202 + Atu3298 0.79 -1.0 326,381 + +0.2 326,451 + -0.5 326,492 + -0.4 326,492 + -0.7 326,500 - -0.5 326,526 + +0.2 326,537 + -0.0 326,654 - -0.1 326,983 - Atu3299 0.75 +3.0 327,022 - Atu3299 0.84 +0.0 327,131 - +0.0 327,133 + +0.5 327,141 - +0.3 327,141 - +0.1 327,263 - +0.3 327,311 + Atu3300 0.13 +0.2 327,329 + Atu3300 0.14 +0.2 327,421 + Atu3300 0.21 +1.9 327,447 - Atu3300 0.23 -0.4
Or see this region's nucleotide sequence