Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2000

Experiment: D-Cellobiose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cellobiose (C)
2,349,482	+				+0.0
2,349,522	+				-0.5
2,349,574	+		Echvi_1998	0.13	+1.4
2,349,574	+		Echvi_1998	0.13	+0.2
2,349,574	+		Echvi_1998	0.13	+0.6
2,349,575	-		Echvi_1998	0.13	+0.8
2,349,575	-		Echvi_1998	0.13	+0.8
2,349,596	-		Echvi_1998	0.18	-0.3
2,349,689	-		Echvi_1998	0.40	+0.1
2,349,708	+		Echvi_1998	0.45	-0.0
2,349,770	+		Echvi_1998	0.59	+0.9
2,349,846	-		Echvi_1998	0.77	-0.5
2,349,872	+		Echvi_1998	0.84	+1.3
2,349,873	-		Echvi_1998	0.84	+0.0
2,349,890	-		Echvi_1998	0.88	-0.5
2,349,902	+				-0.1
2,349,903	-				-2.3
2,349,903	-				-0.4
2,349,930	-				-1.3
2,350,243	-				-3.0
2,350,246	+				+0.5
2,350,246	+				+0.2
2,350,247	-				-2.0
2,350,247	-				-3.1
2,350,258	-				-1.0
2,350,258	-				-1.9
2,350,330	-		Echvi_1999	0.63	-1.5
2,350,339	-		Echvi_1999	0.71	-0.9
2,350,354	-		Echvi_1999	0.83	-3.6
2,350,373	-				-1.5
2,350,385	-				-1.5
2,350,389	-				-0.2
2,350,389	-				-2.1
2,350,391	+				+1.0
2,350,393	+				+1.2
2,350,393	+				-1.1
2,350,394	-				-2.6
2,350,394	-				-2.1
2,350,394	-				-3.3
2,350,431	+				+0.2
2,350,431	+				-0.0
2,350,431	+				-2.3
2,350,507	+				-2.4
2,350,508	-				-2.3
2,350,653	+				-3.0
2,350,653	+				-3.1
2,350,653	+				-4.7
2,350,653	+				-3.6
2,350,654	-				-2.5
2,350,654	-				+0.8
2,350,703	+				-2.4
2,350,704	-				-3.8
2,350,704	-				-3.7
2,350,786	+		Echvi_2000	0.13	-2.4
2,350,786	+		Echvi_2000	0.13	-2.0
2,350,823	-		Echvi_2000	0.15	-3.8
2,350,823	-		Echvi_2000	0.15	-3.3
2,350,889	+		Echvi_2000	0.17	-2.7
2,350,889	+		Echvi_2000	0.17	-4.1
2,350,900	+		Echvi_2000	0.18	-1.8
2,350,900	+		Echvi_2000	0.18	-3.7
2,350,900	+		Echvi_2000	0.18	-2.4
2,350,900	+		Echvi_2000	0.18	-4.4
2,350,901	-		Echvi_2000	0.18	-4.1
2,350,901	-		Echvi_2000	0.18	-2.2
2,350,962	+		Echvi_2000	0.20	-4.3
2,350,963	-		Echvi_2000	0.20	-1.4
2,351,087	-		Echvi_2000	0.25	-3.3
2,351,088	+		Echvi_2000	0.25	-2.6
2,351,088	+		Echvi_2000	0.25	-3.2
2,351,183	-		Echvi_2000	0.29	-0.5
2,351,183	-		Echvi_2000	0.29	-1.4
2,351,212	+		Echvi_2000	0.30	-4.2
2,351,212	+		Echvi_2000	0.30	-2.3
2,351,212	+		Echvi_2000	0.30	-2.4
2,351,213	-		Echvi_2000	0.30	-2.7
2,351,213	-		Echvi_2000	0.30	-2.6
2,351,213	-		Echvi_2000	0.30	-2.0
2,351,301	-		Echvi_2000	0.34	-1.5
2,351,303	-		Echvi_2000	0.34	-2.1
2,351,303	-		Echvi_2000	0.34	-2.5
2,351,303	-		Echvi_2000	0.34	-2.4
2,351,303	-		Echvi_2000	0.34	-1.7
2,351,304	+		Echvi_2000	0.34	-2.4
2,351,400	+		Echvi_2000	0.38	-1.9
2,351,401	-		Echvi_2000	0.38	-0.2
2,351,401	-		Echvi_2000	0.38	-3.3
2,351,401	-		Echvi_2000	0.38	-0.5
2,351,401	-		Echvi_2000	0.38	-5.0
2,351,526	+		Echvi_2000	0.43	-2.0
2,351,526	+		Echvi_2000	0.43	-3.4
2,351,526	+		Echvi_2000	0.43	-2.5
2,351,727	+		Echvi_2000	0.51	-2.6
2,351,728	-		Echvi_2000	0.51	-2.4
2,351,986	+		Echvi_2000	0.62	-3.9
2,351,989	-		Echvi_2000	0.62	-4.9
2,351,989	-		Echvi_2000	0.62	-3.1
2,352,027	-		Echvi_2000	0.64	-4.1
2,352,027	-		Echvi_2000	0.64	-4.2
2,352,027	-		Echvi_2000	0.64	-1.9
2,352,027	-		Echvi_2000	0.64	-2.5
2,352,054	+		Echvi_2000	0.65	-0.5
2,352,066	+		Echvi_2000	0.65	-3.7
2,352,073	-		Echvi_2000	0.66	-1.5
2,352,075	-		Echvi_2000	0.66	-4.0
2,352,124	-		Echvi_2000	0.68	-3.0
2,352,152	-		Echvi_2000	0.69	-1.5
2,352,176	+		Echvi_2000	0.70	-3.6
2,352,177	-		Echvi_2000	0.70	-1.4
2,352,185	+		Echvi_2000	0.70	-1.5
2,352,185	+		Echvi_2000	0.70	-3.1
2,352,185	+		Echvi_2000	0.70	-4.0
2,352,185	+		Echvi_2000	0.70	-2.3
2,352,186	-		Echvi_2000	0.70	-2.4
2,352,186	-		Echvi_2000	0.70	-4.1
2,352,186	-		Echvi_2000	0.70	-2.7
2,352,195	+		Echvi_2000	0.71	-4.5
2,352,226	+		Echvi_2000	0.72	-3.3
2,352,264	-		Echvi_2000	0.73	-1.7
2,352,365	+		Echvi_2000	0.77	-2.0
2,352,366	-		Echvi_2000	0.78	-0.8
2,352,388	-		Echvi_2000	0.78	-2.6
2,352,428	+		Echvi_2000	0.80	-0.7
2,352,456	+		Echvi_2000	0.81	-5.0
2,352,456	+		Echvi_2000	0.81	-2.6
2,352,457	-		Echvi_2000	0.81	-3.6
2,352,558	-		Echvi_2000	0.85	-2.7
2,352,765	+				-3.2
2,352,771	+				-0.2
2,352,783	+				-1.4
2,352,783	+				-4.1
2,352,833	+				-2.5
2,352,833	+				-2.5
2,352,834	-				-4.0
2,352,834	-				-3.5
2,353,092	-		Echvi_2001	0.19	-4.8
2,353,136	-		Echvi_2001	0.24	-2.7
2,353,142	+		Echvi_2001	0.25	-0.8
2,353,168	-		Echvi_2001	0.27	-1.5
2,353,378	-		Echvi_2001	0.50	-2.7
2,353,378	-				+1.8
2,353,378	-		Echvi_2001	0.50	-4.5
2,353,378	-		Echvi_2001	0.50	-1.5
2,353,423	-		Echvi_2001	0.55	-3.2
2,353,423	-		Echvi_2001	0.55	-3.9
2,353,423	-		Echvi_2001	0.55	-4.0
2,353,477	+		Echvi_2001	0.60	-2.8
2,353,477	+		Echvi_2001	0.60	-4.4
2,353,511	+		Echvi_2001	0.64	-1.0
2,353,512	-		Echvi_2001	0.64	-2.8
2,353,552	-		Echvi_2001	0.68	-1.5
2,353,655	-		Echvi_2001	0.79	-3.4
2,353,709	+		Echvi_2001	0.85	-0.2
2,353,709	+		Echvi_2001	0.85	-2.7
2,353,709	+		Echvi_2001	0.85	-3.8
2,353,754	-				-3.1
2,353,765	+				-1.5
2,353,797	+				-1.2
2,353,797	+				-1.9
2,353,797	+				-1.4
2,353,798	-				-2.5
2,353,811	-				-2.0
2,353,815	-				+0.8
2,353,827	+				-2.1
2,353,827	+				-2.7
2,353,828	-				-2.5
2,353,828	-				-3.0
2,353,845	+				-1.4
2,353,846	-				-2.8
2,353,846	-				-4.1
2,353,864	-				-1.5