Experiment: D-Cellobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0165 and Echvi_0166 are separated by 100 nucleotides Echvi_0166 and Echvi_0167 are separated by 17 nucleotides
Echvi_0165: Echvi_0165 - KpsF/GutQ family protein, at 168,377 to 169,345
_0165
Echvi_0166: Echvi_0166 - ATP-dependent DNA helicase RecQ, at 169,446 to 171,623
_0166
Echvi_0167: Echvi_0167 - phosphoribosylamine--glycine ligase, at 171,641 to 172,933
_0167
Position (kb) 169
170
171
172 Strain fitness (log2 ratio) -2
-1
0
1
2 at 168.463 kb on + strand at 168.528 kb on - strand, within Echvi_0165 at 168.528 kb on - strand, within Echvi_0165 at 168.528 kb on - strand, within Echvi_0165 at 168.560 kb on + strand, within Echvi_0165 at 168.680 kb on + strand, within Echvi_0165 at 168.680 kb on + strand, within Echvi_0165 at 168.958 kb on + strand, within Echvi_0165 at 168.964 kb on + strand, within Echvi_0165 at 168.965 kb on - strand, within Echvi_0165 at 168.967 kb on + strand, within Echvi_0165 at 168.967 kb on + strand, within Echvi_0165 at 168.967 kb on + strand, within Echvi_0165 at 168.972 kb on - strand, within Echvi_0165 at 169.037 kb on - strand, within Echvi_0165 at 169.061 kb on + strand, within Echvi_0165 at 169.088 kb on + strand, within Echvi_0165 at 169.088 kb on + strand, within Echvi_0165 at 169.088 kb on + strand, within Echvi_0165 at 169.088 kb on + strand, within Echvi_0165 at 169.089 kb on - strand, within Echvi_0165 at 169.103 kb on - strand, within Echvi_0165 at 169.310 kb on - strand at 170.036 kb on + strand, within Echvi_0166 at 170.776 kb on - strand at 171.233 kb on - strand, within Echvi_0166 at 171.638 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C) remove 168,463 + -1.8 168,528 - Echvi_0165 0.16 -0.3 168,528 - Echvi_0165 0.16 +1.8 168,528 - Echvi_0165 0.16 +0.4 168,560 + Echvi_0165 0.19 -0.2 168,680 + Echvi_0165 0.31 -0.4 168,680 + Echvi_0165 0.31 -1.3 168,958 + Echvi_0165 0.60 -0.5 168,964 + Echvi_0165 0.61 +1.1 168,965 - Echvi_0165 0.61 -0.4 168,967 + Echvi_0165 0.61 -0.4 168,967 + Echvi_0165 0.61 -0.5 168,967 + Echvi_0165 0.61 -0.6 168,972 - Echvi_0165 0.61 -1.0 169,037 - Echvi_0165 0.68 -2.4 169,061 + Echvi_0165 0.71 -0.5 169,088 + Echvi_0165 0.73 -0.5 169,088 + Echvi_0165 0.73 -0.6 169,088 + Echvi_0165 0.73 -1.0 169,088 + Echvi_0165 0.73 -0.6 169,089 - Echvi_0165 0.73 -1.1 169,103 - Echvi_0165 0.75 -1.2 169,310 - -0.7 170,036 + Echvi_0166 0.27 +1.8 170,776 - +0.2 171,233 - Echvi_0166 0.82 -2.0 171,638 + -1.2
Or see this region's nucleotide sequence