Strain Fitness in Pseudomonas simiae WCS417 around PS417_13340

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13335 and PS417_13340 are separated by 20 nucleotidesPS417_13340 and PS417_13345 are separated by 10 nucleotides PS417_13335: PS417_13335 - aldo/keto reductase, at 2,931,500 to 2,932,486 _13335 PS417_13340: PS417_13340 - hypothetical protein, at 2,932,507 to 2,933,664 _13340 PS417_13345: PS417_13345 - MFS transporter permease, at 2,933,675 to 2,935,054 _13345 Position (kb) 2932 2933 2934Strain fitness (log2 ratio) -2 -1 0 1at 2931.849 kb on - strand, within PS417_13335at 2931.883 kb on + strand, within PS417_13335at 2932.452 kb on - strandat 2932.664 kb on - strand, within PS417_13340at 2932.664 kb on - strand, within PS417_13340at 2932.686 kb on - strand, within PS417_13340at 2932.932 kb on + strand, within PS417_13340at 2933.050 kb on + strand, within PS417_13340at 2933.163 kb on + strand, within PS417_13340at 2933.164 kb on - strand, within PS417_13340at 2933.164 kb on - strand, within PS417_13340at 2933.167 kb on + strand, within PS417_13340at 2933.167 kb on + strand, within PS417_13340at 2933.168 kb on - strand, within PS417_13340at 2933.168 kb on - strand, within PS417_13340at 2933.168 kb on - strand, within PS417_13340at 2933.311 kb on + strandat 2933.831 kb on + strand, within PS417_13345at 2934.311 kb on + strand, within PS417_13345at 2934.586 kb on + strand, within PS417_13345at 2934.586 kb on + strand, within PS417_13345

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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2,931,849 - PS417_13335 0.35 +0.2
2,931,883 + PS417_13335 0.39 -0.3
2,932,452 - +1.2
2,932,664 - PS417_13340 0.14 -0.7
2,932,664 - PS417_13340 0.14 -0.0
2,932,686 - PS417_13340 0.15 -1.5
2,932,932 + PS417_13340 0.37 +0.4
2,933,050 + PS417_13340 0.47 -1.5
2,933,163 + PS417_13340 0.57 +0.5
2,933,164 - PS417_13340 0.57 -1.0
2,933,164 - PS417_13340 0.57 -1.9
2,933,167 + PS417_13340 0.57 -1.2
2,933,167 + PS417_13340 0.57 -0.5
2,933,168 - PS417_13340 0.57 +0.0
2,933,168 - PS417_13340 0.57 -1.8
2,933,168 - PS417_13340 0.57 -0.1
2,933,311 + +1.2
2,933,831 + PS417_13345 0.11 -0.9
2,934,311 + PS417_13345 0.46 -0.7
2,934,586 + PS417_13345 0.66 -0.6
2,934,586 + PS417_13345 0.66 -0.2

Or see this region's nucleotide sequence