Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0859 and Echvi_0860 are separated by 41 nucleotides Echvi_0860 and Echvi_0861 are separated by 27 nucleotides Echvi_0861 and Echvi_0862 are separated by 150 nucleotides Echvi_0862 and Echvi_0863 are separated by 184 nucleotides
Echvi_0859: Echvi_0859 - Predicted molecular chaperone distantly related to HSP70-fold metalloproteases, at 981,093 to 982,169
_0859
Echvi_0860: Echvi_0860 - hypothetical protein, at 982,211 to 982,309
_0860
Echvi_0861: Echvi_0861 - hypothetical protein, at 982,337 to 982,486
_0861
Echvi_0862: Echvi_0862 - Glutamate dehydrogenase/leucine dehydrogenase, at 982,637 to 983,863
_0862
Echvi_0863: Echvi_0863 - Na+/H+ antiporter NhaD and related arsenite permeases, at 984,048 to 985,574
_0863
Position (kb) 982
983
984 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 981.686 kb on - strand, within Echvi_0859 at 981.690 kb on + strand, within Echvi_0859 at 981.690 kb on + strand, within Echvi_0859 at 981.691 kb on - strand, within Echvi_0859 at 981.716 kb on + strand, within Echvi_0859 at 981.727 kb on + strand, within Echvi_0859 at 981.768 kb on + strand, within Echvi_0859 at 981.768 kb on + strand, within Echvi_0859 at 981.768 kb on + strand, within Echvi_0859 at 981.769 kb on - strand, within Echvi_0859 at 981.832 kb on + strand, within Echvi_0859 at 981.885 kb on + strand, within Echvi_0859 at 981.885 kb on + strand, within Echvi_0859 at 981.908 kb on - strand, within Echvi_0859 at 981.935 kb on + strand, within Echvi_0859 at 981.966 kb on + strand, within Echvi_0859 at 982.094 kb on + strand at 982.094 kb on + strand at 982.094 kb on + strand at 982.094 kb on + strand at 982.098 kb on - strand at 982.106 kb on - strand at 982.106 kb on - strand at 982.109 kb on + strand at 982.110 kb on - strand at 982.110 kb on - strand at 982.142 kb on + strand at 982.142 kb on + strand at 982.158 kb on + strand at 982.158 kb on + strand at 982.158 kb on + strand at 982.159 kb on - strand at 982.159 kb on - strand at 982.167 kb on + strand at 982.175 kb on + strand at 982.176 kb on - strand at 982.178 kb on + strand at 982.178 kb on + strand at 982.178 kb on + strand at 982.178 kb on + strand at 982.178 kb on + strand at 982.178 kb on + strand at 982.178 kb on + strand at 982.178 kb on + strand at 982.178 kb on + strand at 982.179 kb on - strand at 982.179 kb on - strand at 982.179 kb on - strand at 982.179 kb on - strand at 982.179 kb on - strand at 982.179 kb on - strand at 982.179 kb on - strand at 982.180 kb on + strand at 982.181 kb on - strand at 982.187 kb on - strand at 982.212 kb on + strand at 982.213 kb on - strand at 982.277 kb on + strand, within Echvi_0860 at 982.277 kb on + strand, within Echvi_0860 at 982.277 kb on + strand, within Echvi_0860 at 982.286 kb on + strand, within Echvi_0860 at 982.286 kb on + strand, within Echvi_0860 at 982.286 kb on + strand, within Echvi_0860 at 982.286 kb on + strand, within Echvi_0860 at 982.287 kb on - strand, within Echvi_0860 at 982.287 kb on - strand, within Echvi_0860 at 982.287 kb on - strand, within Echvi_0860 at 982.287 kb on - strand, within Echvi_0860 at 982.288 kb on + strand, within Echvi_0860 at 982.288 kb on + strand, within Echvi_0860 at 982.288 kb on + strand, within Echvi_0860 at 982.288 kb on + strand, within Echvi_0860 at 982.289 kb on - strand, within Echvi_0860 at 982.289 kb on - strand, within Echvi_0860 at 982.305 kb on - strand at 982.309 kb on + strand at 982.309 kb on + strand at 982.309 kb on + strand at 982.351 kb on + strand at 982.352 kb on - strand, within Echvi_0861 at 982.353 kb on + strand, within Echvi_0861 at 982.354 kb on - strand, within Echvi_0861 at 982.361 kb on + strand, within Echvi_0861 at 982.361 kb on + strand, within Echvi_0861 at 982.361 kb on + strand, within Echvi_0861 at 982.376 kb on - strand, within Echvi_0861 at 982.376 kb on - strand, within Echvi_0861 at 982.420 kb on + strand, within Echvi_0861 at 982.421 kb on - strand, within Echvi_0861 at 982.430 kb on - strand, within Echvi_0861 at 982.475 kb on + strand at 982.476 kb on - strand at 982.519 kb on + strand at 982.520 kb on - strand at 982.520 kb on - strand at 982.531 kb on + strand at 982.632 kb on - strand at 982.632 kb on - strand at 982.637 kb on - strand at 982.637 kb on - strand at 982.637 kb on - strand at 982.777 kb on + strand, within Echvi_0862 at 982.777 kb on + strand, within Echvi_0862 at 982.864 kb on + strand, within Echvi_0862 at 982.944 kb on + strand, within Echvi_0862 at 982.956 kb on - strand, within Echvi_0862 at 982.956 kb on - strand, within Echvi_0862 at 982.956 kb on - strand, within Echvi_0862 at 982.958 kb on + strand, within Echvi_0862 at 982.958 kb on + strand, within Echvi_0862 at 982.963 kb on + strand, within Echvi_0862 at 982.963 kb on + strand, within Echvi_0862 at 982.963 kb on + strand, within Echvi_0862 at 982.963 kb on + strand, within Echvi_0862 at 983.021 kb on + strand, within Echvi_0862 at 983.022 kb on - strand, within Echvi_0862 at 983.052 kb on + strand, within Echvi_0862 at 983.052 kb on + strand, within Echvi_0862 at 983.052 kb on + strand, within Echvi_0862 at 983.052 kb on + strand, within Echvi_0862 at 983.052 kb on + strand, within Echvi_0862 at 983.053 kb on - strand, within Echvi_0862 at 983.128 kb on - strand, within Echvi_0862 at 983.144 kb on + strand, within Echvi_0862 at 983.145 kb on - strand, within Echvi_0862 at 983.145 kb on - strand, within Echvi_0862 at 983.169 kb on - strand, within Echvi_0862 at 983.170 kb on + strand, within Echvi_0862 at 983.170 kb on + strand, within Echvi_0862 at 983.182 kb on + strand, within Echvi_0862 at 983.214 kb on + strand, within Echvi_0862 at 983.215 kb on - strand, within Echvi_0862 at 983.225 kb on + strand, within Echvi_0862 at 983.226 kb on - strand, within Echvi_0862 at 983.226 kb on - strand, within Echvi_0862 at 983.247 kb on + strand, within Echvi_0862 at 983.286 kb on + strand, within Echvi_0862 at 983.286 kb on + strand, within Echvi_0862 at 983.286 kb on + strand, within Echvi_0862 at 983.361 kb on + strand, within Echvi_0862 at 983.361 kb on + strand, within Echvi_0862 at 983.361 kb on + strand, within Echvi_0862 at 983.362 kb on - strand, within Echvi_0862 at 983.385 kb on + strand, within Echvi_0862 at 983.385 kb on + strand, within Echvi_0862 at 983.385 kb on + strand, within Echvi_0862 at 983.386 kb on - strand, within Echvi_0862 at 983.386 kb on - strand, within Echvi_0862 at 983.446 kb on - strand, within Echvi_0862 at 983.485 kb on - strand, within Echvi_0862 at 983.497 kb on - strand, within Echvi_0862 at 983.593 kb on - strand, within Echvi_0862 at 983.730 kb on + strand, within Echvi_0862 at 983.799 kb on + strand at 983.799 kb on + strand at 983.799 kb on + strand at 983.799 kb on + strand at 983.799 kb on + strand at 983.799 kb on + strand at 983.799 kb on + strand at 983.799 kb on + strand at 983.799 kb on + strand at 983.799 kb on + strand at 983.799 kb on + strand at 983.800 kb on - strand at 983.800 kb on - strand at 983.800 kb on - strand at 983.800 kb on - strand at 983.800 kb on - strand at 983.800 kb on - strand at 983.800 kb on - strand at 983.859 kb on + strand at 983.859 kb on + strand at 983.861 kb on + strand at 983.861 kb on + strand at 983.862 kb on - strand at 983.862 kb on - strand at 983.862 kb on - strand at 983.875 kb on + strand at 983.876 kb on - strand at 983.922 kb on + strand at 983.958 kb on + strand at 983.963 kb on + strand at 983.973 kb on + strand at 983.973 kb on + strand at 983.985 kb on + strand at 984.020 kb on + strand at 984.030 kb on + strand at 984.030 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 981,686 - Echvi_0859 0.55 -0.9 981,690 + Echvi_0859 0.55 -0.4 981,690 + Echvi_0859 0.55 -0.0 981,691 - Echvi_0859 0.56 -0.3 981,716 + Echvi_0859 0.58 +0.8 981,727 + Echvi_0859 0.59 +2.7 981,768 + Echvi_0859 0.63 -1.3 981,768 + Echvi_0859 0.63 +0.1 981,768 + Echvi_0859 0.63 -0.1 981,769 - Echvi_0859 0.63 -0.3 981,832 + Echvi_0859 0.69 +0.8 981,885 + Echvi_0859 0.74 -0.6 981,885 + Echvi_0859 0.74 +1.0 981,908 - Echvi_0859 0.76 -0.3 981,935 + Echvi_0859 0.78 +0.3 981,966 + Echvi_0859 0.81 +0.1 982,094 + -1.0 982,094 + -0.4 982,094 + -1.0 982,094 + -0.1 982,098 - -0.3 982,106 - -0.0 982,106 - +0.1 982,109 + -0.3 982,110 - -1.0 982,110 - -0.2 982,142 + -0.9 982,142 + +0.3 982,158 + -0.1 982,158 + -0.3 982,158 + +0.2 982,159 - +0.9 982,159 - +0.5 982,167 + -1.9 982,175 + -1.5 982,176 - +0.7 982,178 + +0.3 982,178 + +1.3 982,178 + -0.2 982,178 + +0.4 982,178 + -0.7 982,178 + -1.3 982,178 + +1.5 982,178 + +0.2 982,178 + -0.2 982,179 - +1.2 982,179 - -0.6 982,179 - -2.8 982,179 - -0.8 982,179 - +0.4 982,179 - -0.6 982,179 - +1.3 982,180 + -0.8 982,181 - -0.4 982,187 - +1.2 982,212 + -0.1 982,213 - +0.4 982,277 + Echvi_0860 0.67 +0.0 982,277 + Echvi_0860 0.67 -0.2 982,277 + Echvi_0860 0.67 -0.5 982,286 + Echvi_0860 0.76 -0.2 982,286 + Echvi_0860 0.76 +0.5 982,286 + Echvi_0860 0.76 -0.8 982,286 + Echvi_0860 0.76 -1.3 982,287 - Echvi_0860 0.77 +0.3 982,287 - Echvi_0860 0.77 -0.3 982,287 - Echvi_0860 0.77 -0.8 982,287 - Echvi_0860 0.77 -0.1 982,288 + Echvi_0860 0.78 -0.1 982,288 + Echvi_0860 0.78 -0.2 982,288 + Echvi_0860 0.78 -0.2 982,288 + Echvi_0860 0.78 -0.4 982,289 - Echvi_0860 0.79 -1.1 982,289 - Echvi_0860 0.79 +2.8 982,305 - +0.5 982,309 + -0.4 982,309 + -0.0 982,309 + +0.1 982,351 + +0.3 982,352 - Echvi_0861 0.10 -0.4 982,353 + Echvi_0861 0.11 -0.4 982,354 - Echvi_0861 0.11 +0.7 982,361 + Echvi_0861 0.16 +0.1 982,361 + Echvi_0861 0.16 +0.3 982,361 + Echvi_0861 0.16 -0.5 982,376 - Echvi_0861 0.26 +0.4 982,376 - Echvi_0861 0.26 +1.0 982,420 + Echvi_0861 0.55 -0.6 982,421 - Echvi_0861 0.56 -0.9 982,430 - Echvi_0861 0.62 +0.0 982,475 + +0.7 982,476 - -0.2 982,519 + +0.6 982,520 - +0.8 982,520 - +0.2 982,531 + -0.7 982,632 - +1.0 982,632 - -0.1 982,637 - +0.5 982,637 - +0.6 982,637 - -0.2 982,777 + Echvi_0862 0.11 -0.3 982,777 + Echvi_0862 0.11 -1.2 982,864 + Echvi_0862 0.19 -0.5 982,944 + Echvi_0862 0.25 -0.4 982,956 - Echvi_0862 0.26 +0.5 982,956 - Echvi_0862 0.26 +0.4 982,956 - Echvi_0862 0.26 +1.4 982,958 + Echvi_0862 0.26 -0.1 982,958 + Echvi_0862 0.26 -1.1 982,963 + Echvi_0862 0.27 -0.4 982,963 + Echvi_0862 0.27 +0.3 982,963 + Echvi_0862 0.27 -0.2 982,963 + Echvi_0862 0.27 -0.0 983,021 + Echvi_0862 0.31 -0.5 983,022 - Echvi_0862 0.31 +0.2 983,052 + Echvi_0862 0.34 +0.4 983,052 + Echvi_0862 0.34 -0.4 983,052 + Echvi_0862 0.34 +0.7 983,052 + Echvi_0862 0.34 -0.1 983,052 + Echvi_0862 0.34 -1.1 983,053 - Echvi_0862 0.34 -0.8 983,128 - Echvi_0862 0.40 +0.4 983,144 + Echvi_0862 0.41 -0.8 983,145 - Echvi_0862 0.41 +0.5 983,145 - Echvi_0862 0.41 +0.2 983,169 - Echvi_0862 0.43 +0.0 983,170 + Echvi_0862 0.43 -0.2 983,170 + Echvi_0862 0.43 -0.5 983,182 + Echvi_0862 0.44 +0.2 983,214 + Echvi_0862 0.47 -0.0 983,215 - Echvi_0862 0.47 -0.1 983,225 + Echvi_0862 0.48 -0.3 983,226 - Echvi_0862 0.48 -0.1 983,226 - Echvi_0862 0.48 +0.7 983,247 + Echvi_0862 0.50 +0.3 983,286 + Echvi_0862 0.53 -1.0 983,286 + Echvi_0862 0.53 -0.4 983,286 + Echvi_0862 0.53 -0.5 983,361 + Echvi_0862 0.59 -0.6 983,361 + Echvi_0862 0.59 +0.7 983,361 + Echvi_0862 0.59 -0.1 983,362 - Echvi_0862 0.59 +0.3 983,385 + Echvi_0862 0.61 +0.7 983,385 + Echvi_0862 0.61 -1.5 983,385 + Echvi_0862 0.61 -0.2 983,386 - Echvi_0862 0.61 -0.7 983,386 - Echvi_0862 0.61 -0.4 983,446 - Echvi_0862 0.66 -0.5 983,485 - Echvi_0862 0.69 -0.3 983,497 - Echvi_0862 0.70 +0.1 983,593 - Echvi_0862 0.78 -0.1 983,730 + Echvi_0862 0.89 -0.5 983,799 + -0.5 983,799 + -0.7 983,799 + -0.9 983,799 + +0.2 983,799 + -1.1 983,799 + +0.0 983,799 + -0.4 983,799 + -0.9 983,799 + -0.7 983,799 + +0.1 983,799 + +0.3 983,800 - -0.8 983,800 - -0.2 983,800 - -0.3 983,800 - +0.3 983,800 - +0.1 983,800 - -0.1 983,800 - +2.0 983,859 + +0.9 983,859 + -0.9 983,861 + -0.3 983,861 + +0.6 983,862 - +0.1 983,862 - +1.1 983,862 - +0.3 983,875 + -0.4 983,876 - -0.4 983,922 + -0.2 983,958 + -0.2 983,963 + -0.3 983,973 + -0.5 983,973 + -0.1 983,985 + +0.3 984,020 + +0.2 984,030 + -0.7 984,030 + -0.6
Or see this region's nucleotide sequence