Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0599

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0597 and Echvi_0598 are separated by 6 nucleotidesEchvi_0598 and Echvi_0599 are separated by 5 nucleotidesEchvi_0599 and Echvi_0600 overlap by 12 nucleotides Echvi_0597: Echvi_0597 - Uracil phosphoribosyltransferase, at 674,657 to 675,304 _0597 Echvi_0598: Echvi_0598 - K+-dependent Na+/Ca+ exchanger related-protein, at 675,311 to 676,240 _0598 Echvi_0599: Echvi_0599 - hypothetical protein, at 676,246 to 676,704 _0599 Echvi_0600: Echvi_0600 - L-serine dehydratase, iron-sulfur-dependent, alpha subunit, at 676,693 to 677,601 _0600 Position (kb) 676 677Strain fitness (log2 ratio) -2 -1 0 1 2at 675.248 kb on + strandat 675.248 kb on + strandat 675.317 kb on + strandat 675.318 kb on - strandat 675.318 kb on - strandat 675.325 kb on - strandat 675.325 kb on - strandat 675.343 kb on + strandat 675.435 kb on + strand, within Echvi_0598at 675.438 kb on + strand, within Echvi_0598at 675.438 kb on + strand, within Echvi_0598at 675.438 kb on + strand, within Echvi_0598at 675.439 kb on - strand, within Echvi_0598at 675.506 kb on - strand, within Echvi_0598at 675.525 kb on + strand, within Echvi_0598at 675.526 kb on - strand, within Echvi_0598at 675.533 kb on - strand, within Echvi_0598at 675.544 kb on + strand, within Echvi_0598at 675.544 kb on + strand, within Echvi_0598at 675.544 kb on + strand, within Echvi_0598at 675.547 kb on - strand, within Echvi_0598at 675.547 kb on - strand, within Echvi_0598at 675.547 kb on - strand, within Echvi_0598at 675.547 kb on - strand, within Echvi_0598at 675.579 kb on - strand, within Echvi_0598at 675.630 kb on + strand, within Echvi_0598at 675.630 kb on + strand, within Echvi_0598at 675.631 kb on - strand, within Echvi_0598at 675.650 kb on + strand, within Echvi_0598at 675.650 kb on + strand, within Echvi_0598at 675.651 kb on - strand, within Echvi_0598at 675.731 kb on + strand, within Echvi_0598at 675.732 kb on - strand, within Echvi_0598at 675.732 kb on - strand, within Echvi_0598at 675.817 kb on - strand, within Echvi_0598at 675.821 kb on + strand, within Echvi_0598at 675.821 kb on + strand, within Echvi_0598at 675.822 kb on - strand, within Echvi_0598at 675.823 kb on + strand, within Echvi_0598at 675.826 kb on - strand, within Echvi_0598at 675.826 kb on - strand, within Echvi_0598at 676.012 kb on - strand, within Echvi_0598at 676.019 kb on - strand, within Echvi_0598at 676.053 kb on + strand, within Echvi_0598at 676.063 kb on + strand, within Echvi_0598at 676.064 kb on - strand, within Echvi_0598at 676.089 kb on + strand, within Echvi_0598at 676.135 kb on + strand, within Echvi_0598at 676.141 kb on - strand, within Echvi_0598at 676.143 kb on + strand, within Echvi_0598at 676.143 kb on + strand, within Echvi_0598at 676.143 kb on + strand, within Echvi_0598at 676.143 kb on + strand, within Echvi_0598at 676.157 kb on - strandat 676.201 kb on - strandat 676.201 kb on - strandat 676.201 kb on - strandat 676.218 kb on + strandat 676.218 kb on + strandat 676.219 kb on - strandat 676.219 kb on - strandat 676.221 kb on - strandat 676.221 kb on - strandat 676.228 kb on - strandat 676.256 kb on - strandat 676.256 kb on - strandat 676.257 kb on + strandat 676.258 kb on - strandat 676.279 kb on + strandat 676.279 kb on + strandat 676.279 kb on + strandat 676.279 kb on + strandat 676.280 kb on - strandat 676.333 kb on - strand, within Echvi_0599at 676.336 kb on + strand, within Echvi_0599at 676.336 kb on + strand, within Echvi_0599at 676.339 kb on - strand, within Echvi_0599at 676.356 kb on - strand, within Echvi_0599at 676.398 kb on + strand, within Echvi_0599at 676.568 kb on + strand, within Echvi_0599at 676.569 kb on - strand, within Echvi_0599at 676.642 kb on - strand, within Echvi_0599at 676.694 kb on + strandat 676.694 kb on + strandat 676.695 kb on - strandat 676.809 kb on + strand, within Echvi_0600at 676.847 kb on - strand, within Echvi_0600at 676.876 kb on - strand, within Echvi_0600at 676.949 kb on - strand, within Echvi_0600at 676.987 kb on + strand, within Echvi_0600at 676.988 kb on - strand, within Echvi_0600at 676.993 kb on - strand, within Echvi_0600at 676.993 kb on - strand, within Echvi_0600at 676.993 kb on - strand, within Echvi_0600at 676.993 kb on - strand, within Echvi_0600at 677.034 kb on + strand, within Echvi_0600at 677.051 kb on + strand, within Echvi_0600at 677.215 kb on + strand, within Echvi_0600at 677.221 kb on - strand, within Echvi_0600at 677.223 kb on - strand, within Echvi_0600at 677.269 kb on + strand, within Echvi_0600at 677.269 kb on + strand, within Echvi_0600at 677.283 kb on + strand, within Echvi_0600at 677.366 kb on + strand, within Echvi_0600at 677.366 kb on + strand, within Echvi_0600at 677.366 kb on + strand, within Echvi_0600at 677.367 kb on - strand, within Echvi_0600at 677.367 kb on - strand, within Echvi_0600at 677.450 kb on - strand, within Echvi_0600at 677.454 kb on + strand, within Echvi_0600at 677.455 kb on - strand, within Echvi_0600at 677.456 kb on + strand, within Echvi_0600at 677.456 kb on + strand, within Echvi_0600at 677.534 kb on + strandat 677.594 kb on + strandat 677.614 kb on + strandat 677.615 kb on - strandat 677.615 kb on - strandat 677.616 kb on + strandat 677.617 kb on - strandat 677.622 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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675,248 + +1.1
675,248 + +0.1
675,317 + +1.5
675,318 - -0.5
675,318 - +0.1
675,325 - +0.3
675,325 - -0.2
675,343 + +0.1
675,435 + Echvi_0598 0.13 +0.4
675,438 + Echvi_0598 0.14 -1.0
675,438 + Echvi_0598 0.14 -0.8
675,438 + Echvi_0598 0.14 +0.1
675,439 - Echvi_0598 0.14 -1.7
675,506 - Echvi_0598 0.21 +0.9
675,525 + Echvi_0598 0.23 +0.1
675,526 - Echvi_0598 0.23 -2.4
675,533 - Echvi_0598 0.24 -0.1
675,544 + Echvi_0598 0.25 -0.2
675,544 + Echvi_0598 0.25 +0.1
675,544 + Echvi_0598 0.25 -0.5
675,547 - Echvi_0598 0.25 -0.7
675,547 - Echvi_0598 0.25 -0.2
675,547 - Echvi_0598 0.25 -0.7
675,547 - Echvi_0598 0.25 +0.8
675,579 - Echvi_0598 0.29 +0.1
675,630 + Echvi_0598 0.34 +0.9
675,630 + Echvi_0598 0.34 -0.5
675,631 - Echvi_0598 0.34 -1.5
675,650 + Echvi_0598 0.36 +1.2
675,650 + Echvi_0598 0.36 -0.3
675,651 - Echvi_0598 0.37 +1.3
675,731 + Echvi_0598 0.45 -0.8
675,732 - Echvi_0598 0.45 +0.9
675,732 - Echvi_0598 0.45 -0.1
675,817 - Echvi_0598 0.54 +0.1
675,821 + Echvi_0598 0.55 +1.3
675,821 + Echvi_0598 0.55 -1.5
675,822 - Echvi_0598 0.55 -0.7
675,823 + Echvi_0598 0.55 -0.2
675,826 - Echvi_0598 0.55 +0.4
675,826 - Echvi_0598 0.55 +0.3
676,012 - Echvi_0598 0.75 +0.6
676,019 - Echvi_0598 0.76 -0.8
676,053 + Echvi_0598 0.80 -0.0
676,063 + Echvi_0598 0.81 +0.9
676,064 - Echvi_0598 0.81 +0.5
676,089 + Echvi_0598 0.84 +0.7
676,135 + Echvi_0598 0.89 +0.3
676,141 - Echvi_0598 0.89 +1.5
676,143 + Echvi_0598 0.89 +0.4
676,143 + Echvi_0598 0.89 -0.6
676,143 + Echvi_0598 0.89 +0.1
676,143 + Echvi_0598 0.89 -0.9
676,157 - +1.3
676,201 - +1.1
676,201 - -0.5
676,201 - -0.9
676,218 + -1.9
676,218 + -1.5
676,219 - +0.0
676,219 - -0.4
676,221 - +1.2
676,221 - +0.2
676,228 - -0.1
676,256 - +0.3
676,256 - -1.2
676,257 + +0.1
676,258 - -1.0
676,279 + +1.2
676,279 + +0.4
676,279 + -1.4
676,279 + -0.8
676,280 - -0.1
676,333 - Echvi_0599 0.19 +0.3
676,336 + Echvi_0599 0.20 -0.3
676,336 + Echvi_0599 0.20 -0.7
676,339 - Echvi_0599 0.20 -0.0
676,356 - Echvi_0599 0.24 -0.4
676,398 + Echvi_0599 0.33 +0.2
676,568 + Echvi_0599 0.70 -1.9
676,569 - Echvi_0599 0.70 -1.9
676,642 - Echvi_0599 0.86 -0.6
676,694 + -0.9
676,694 + -1.7
676,695 - -0.8
676,809 + Echvi_0600 0.13 +0.4
676,847 - Echvi_0600 0.17 +0.7
676,876 - Echvi_0600 0.20 -0.2
676,949 - Echvi_0600 0.28 +2.1
676,987 + Echvi_0600 0.32 +0.8
676,988 - Echvi_0600 0.32 +0.0
676,993 - Echvi_0600 0.33 +0.3
676,993 - Echvi_0600 0.33 +0.3
676,993 - Echvi_0600 0.33 -0.1
676,993 - Echvi_0600 0.33 +1.2
677,034 + Echvi_0600 0.38 -0.2
677,051 + Echvi_0600 0.39 +0.1
677,215 + Echvi_0600 0.57 +0.1
677,221 - Echvi_0600 0.58 +0.5
677,223 - Echvi_0600 0.58 +0.7
677,269 + Echvi_0600 0.63 -0.8
677,269 + Echvi_0600 0.63 +0.8
677,283 + Echvi_0600 0.65 +2.1
677,366 + Echvi_0600 0.74 +1.5
677,366 + Echvi_0600 0.74 -1.5
677,366 + Echvi_0600 0.74 -1.3
677,367 - Echvi_0600 0.74 +0.7
677,367 - Echvi_0600 0.74 +0.1
677,450 - Echvi_0600 0.83 -0.2
677,454 + Echvi_0600 0.84 +2.1
677,455 - Echvi_0600 0.84 -0.2
677,456 + Echvi_0600 0.84 +0.2
677,456 + Echvi_0600 0.84 +1.0
677,534 + -1.2
677,594 + +0.5
677,614 + -2.2
677,615 - +1.4
677,615 - -1.5
677,616 + +1.3
677,617 - -0.4
677,622 - -0.2

Or see this region's nucleotide sequence